Psme1 (proteasome activator subunit 1)

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Gene: Psme1 (proteasome activator subunit 1) Chinchilla lanigera

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Symbol:

Psme1

Name:

proteasome activator subunit 1

RGD ID:

8758854

Description:

ENCODES a protein that exhibits endopeptidase activator activity (ortholog); INVOLVED IN antigen processing and presentation of exogenous antigen (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); carcinoma (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

proteasome (prosome, macropain) activator subunit 1 (PA28 alpha); proteasome activator complex subunit 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	36,262,114 - 36,264,994 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	36,262,114 - 36,264,996 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Animal Mammary Neoplasms (ISO)

Brain-Lung-Thyroid Syndrome (ISO)

carcinoma (ISO)

esophagus squamous cell carcinoma (ISO)

Experimental Mammary Neoplasms (ISO)

human immunodeficiency virus infectious disease (ISO)

lysinuric protein intolerance (ISO)

Specific Granule Deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antigen processing and presentation of exogenous antigen (ISO)

Molecular Function

endopeptidase activator activity (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Psme1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	36,262,114 - 36,264,994 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	36,262,114 - 36,264,996 (-)	NCBI	ChiLan1.0	ChiLan1.0

PSME1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	24,136,194 - 24,138,962 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	24,136,163 - 24,138,967 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	24,605,403 - 24,608,171 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	23,675,218 - 23,678,016 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	23,675,217 - 23,678,015	NCBI
Celera	14	4,469,848 - 4,472,646 (+)	NCBI		Celera
Cytogenetic Map	14	q12	NCBI
HuRef	14	4,720,599 - 4,723,242 (+)	NCBI		HuRef
CHM1_1	14	24,604,038 - 24,606,847 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	18,334,505 - 18,337,273 (+)	NCBI		T2T-CHM13v2.0

Psme1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	55,815,951 - 55,818,984 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	55,815,580 - 55,818,986 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	55,578,494 - 55,581,527 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	55,578,123 - 55,581,529 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	56,197,331 - 56,200,364 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	54,532,565 - 54,535,598 (+)	NCBI		MGSCv36	mm8
Celera	14	53,383,350 - 53,386,383 (+)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	28.19	NCBI

Psme1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	33,038,962 - 33,041,849 (+)	NCBI		GRCr8
mRatBN7.2	15	29,069,012 - 29,071,888 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	29,068,729 - 29,071,890 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	30,914,716 - 30,917,592 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	32,061,922 - 32,064,798 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	30,304,268 - 30,307,144 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	34,256,071 - 34,258,947 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	34,256,071 - 34,258,947 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	38,146,266 - 38,149,142 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	33,712,892 - 33,715,769 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	33,728,591 - 33,731,469 (+)	NCBI
Celera	15	28,644,934 - 28,647,810 (+)	NCBI		Celera
Cytogenetic Map	15	p13	NCBI

PSME1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	25,490,494 - 25,493,326 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	24,706,986 - 24,709,818 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	4,912,390 - 4,915,219 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	23,036,223 - 23,039,405 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	23,033,548 - 23,039,405 (+)	Ensembl	panpan1.1		panPan2

PSME1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	4,131,197 - 4,134,001 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	4,131,345 - 4,134,006 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	4,052,885 - 4,055,693 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	4,241,777 - 4,244,585 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	4,241,348 - 4,244,585 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	3,932,403 - 3,935,211 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	3,994,149 - 3,996,957 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	4,256,309 - 4,259,117 (+)	NCBI		UU_Cfam_GSD_1.0

Psme1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	35,980,669 - 35,983,504 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936722	403,112 - 408,473 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936722	405,491 - 408,277 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PSME1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	75,160,766 - 75,164,810 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	75,161,830 - 75,164,531 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	80,433,126 - 80,435,826 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	7	q12-q23	NCBI

PSME1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	1,122,086 - 1,124,907 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	1,122,631 - 1,125,416 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666036	12,803,781 - 12,806,636 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Psme1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624820	8,397,344 - 8,400,285 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624820	8,397,344 - 8,400,273 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005377033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013510409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01010454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCB01003421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000014302 ⟹ ENSCLAP00000014144

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955409	36,262,114 - 36,264,994 (-)	Ensembl

Ensembl Acc Id:

ENSCLAT00000014303 ⟹ ENSCLAP00000014145

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955409	36,262,263 - 36,264,756 (-)	Ensembl

RefSeq Acc Id:

XM_005377033 ⟹ XP_005377090

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955409	36,262,114 - 36,264,994 (-)	NCBI

Sequence:

show sequence

CGCGAGCGAGGGCCGGGCGGCGAGGGGCGGTCGGAAACGCTCCTGGGCGGCTCTAGGGGGAGCC
CCCAGCCGCGGCCGCCTTCCTGCGCTCCCCTCAGCCCCGGGCTGTCCCCGCCTCCTCCCGGCGC
TCCACTCCCCACTACCCAGGAAGACGGCGCCGGTGGCGAGTGCTGCTTTCGCTTTCCCTTCCCC
GTGCCCGCTCCTGGCTCCTCGTGCGCGCTGGGCCCCTGCCCCGGCCATGGCCACGTTCAGGGTC
CAGCCTGAAGCCCAAGCCAAGGTGGATGTGTTTCGTGAAGATCTGTGCACCAAGGCAGAGAACC
TGCTCGGGAGCTATTTCCCCAAGAAGATTTCTGAGCTGGATGCATTTTTAAAGGATCCAGCTCT
CAATGAAGCCAACCTGAACAATCTGAAGGCCCCCCTGGACATTCCAATACCGGATCCAGCCAAA
GAAAAAGAGAAGGAGGAGCGAAAGAAACAGCAGGAGAAGGAAAACAAGGATGAGAAGAAGAAAG
GGGAAGATGAAGACAAAGGTCCTCCCTGTGGCCCAGTGAACTGTAACGAGAAGATCGTACTCCT
CCTGCAGCGCCTGAAGCCCGAGATCAAAGATGTCATTGAGCAGCTCAACCTGGTCACTACCTGG
TTGCAGCTACAGATACCTCGGATTGAGGATGGAAATAATTTTGGGGTGGCCGTCCAGGAGAAAG
TGTTTGAACTGATGACCAGCCTTCACACAAAGCTAGAAGGCTTCCACACTCAAATCTCAAAGTA
TTTCTCTGAGCGTGGTGACGCAGTAACCAAAGCAGCCAAGCAGCCCCATGTGGGTGATTATCGG
CAGCTGGTGCATGAGCTGGATGAGGCAGAGTACCGGGACATCCGGCTGATGGTCATGGAGATCC
GCAATGCTTATGCTGTGCTATACGACATCATCCTGAAGAACTTTGAGAAGCTCAAGAAGCCCCG
CGGAGAAACAAAGGGAATGATTTATTGAAGGTGTCTGCTCTCACTGGGATGGGCATAGCAGAGC
CCGACCTTCTTTTTACTGGGGACTCCAGCCTTTCCCCTACCTTTCTCCTGTTGAAGTTTCTCCC
TCACTTTGTCTCCTAAGCACAATAAATACAGTCATACAGTTGCCCATCA

hide sequence

RefSeq Acc Id:

XM_013510409 ⟹ XP_013365863

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955409	36,262,355 - 36,264,996 (-)	NCBI

Sequence:

show sequence

GGCGCGAGCGAGGGCCGGGCGGCGAGGGGCGGTCGGAAACGCTCCTGGGCGGCTCTAGGGGGAG
CCCCCAGCCGCGGCCGCCTTCCTGCGCTCCCCTCAGCCCCGGGCTGTCCCCGCCTCCTCCCGGC
GCTCCACTCCCCACTACCCAGGAAGACGGCGCCGGTGGCGAGTGCTGCTTTCGCTTTCCCTTCC
CCGTGCCCGCTCCTGGCTCCTCGTGCGCGCTGGGCCCCTGCCCCGGCCATGGCCACGTTCAGGG
TCCAGCCTGAAGCCCAAGCCAAGGTGGATGTGTTTCGTGAAGATCTGTGCACCAAGGCAGAGAA
CCTGCTCGGGAGCTATTTCCCCAAGAAGATTTCTGAGCTGGATGCATTTTTAAAGGATCCAGCT
CTCAATGAAGCCAACCTGAACAATCTGAAGGCCCCCCTGGACATTCCAATACCGGATCCAGCCA
AAGAAAAAGAGAAGGAGGAGCGAAAGAAACAGCAGGAGAAGGAAAACAAGGATGAGAAGAAGAA
AGGGGAAGATGAAGACAAAGGTCCTCCCTGTGGCCCAGTGAACTGTAACGAGAAGATCGTACTC
CTCCTGCAGCGCCTGAAGCCCGAGATCAAAGATGTCATTGAGCAGCTCAACCTGGTCACTACCT
GGTTGCAGCTACAGATACCTCGGATTGAGGATGGAAATAATTTTGGGGTGGCCGTCCAGGAGAA
AGTGTTTGAACTGATGACCAGCCTTCACACAAAGCTAGAAGGCTTCCACACTCAAATCTCAAAG
TATTTCTCTGAGCGTGGTGACGCAGTAACCAAAGCAGCCAAGCAGCCCCATGTGGGTGATTATC
GGCAGCTGGTGCATGAGCTGGATGAGGCAGAGTACCGGGACATCCGGCTGATGGTCATGGAGAT
CCGCAATGCTTATGCTGCAGGCAAAGGATGACAAAGCCTAGCCTCTCCACAAGACTAGAAATGG
GGCAGAGAACCCTGCAGGCCTGTGGCTGACCCCCACTGCACCC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005377090	(Get FASTA)	NCBI Sequence Viewer
	XP_013365863	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000014144
	ENSCLAP00000014144.1
	ENSCLAP00000014145.1

RefSeq Acc Id:	XP_005377090 ⟸ XM_005377033
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VG33 (UniProtKB/TrEMBL), A0A8C2VJB9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATFRVQPEAQAKVDVFREDLCTKAENLLGSYFPKKISELDAFLKDPALNEANLNNLKAPLDIP IPDPAKEKEKEERKKQQEKENKDEKKKGEDEDKGPPCGPVNCNEKIVLLLQRLKPEIKDVIEQL NLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQP HVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRGETKGMIY hide sequence

RefSeq Acc Id:	XP_013365863 ⟸ XM_013510409
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VJB9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATFRVQPEAQAKVDVFREDLCTKAENLLGSYFPKKISELDAFLKDPALNEANLNNLKAPLDIP IPDPAKEKEKEERKKQQEKENKDEKKKGEDEDKGPPCGPVNCNEKIVLLLQRLKPEIKDVIEQL NLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQP HVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAAGKG hide sequence

Ensembl Acc Id:

ENSCLAP00000014144 ⟸ ENSCLAT00000014302

Ensembl Acc Id:

ENSCLAP00000014145 ⟸ ENSCLAT00000014303

Protein Domains

Proteasome activator PA28 C-terminal Proteasome activator PA28 N-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000009765	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000014302	ENTREZGENE
	ENSCLAT00000014302.1	UniProtKB/TrEMBL
	ENSCLAT00000014303.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.120.180	UniProtKB/TrEMBL
	1.20.5.120	UniProtKB/TrEMBL
InterPro	PA28_C	UniProtKB/TrEMBL
	PA28_C_sf	UniProtKB/TrEMBL
	PA28_N_sf	UniProtKB/TrEMBL
	Proteasome_activ_PA28	UniProtKB/TrEMBL
	Proteasome_activ_PA28_N	UniProtKB/TrEMBL
	Proteasome_activ_sf	UniProtKB/TrEMBL
NCBI Gene	Psme1	ENTREZGENE
PANTHER	PROTEASOME ACTIVATOR COMPLEX SUBUNIT 1	UniProtKB/TrEMBL
	PTHR10660	UniProtKB/TrEMBL
Pfam	PA28_alpha	UniProtKB/TrEMBL
	PA28_beta	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47216	UniProtKB/TrEMBL
UniProt	A0A8C2VG33	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2VJB9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	Psme1	proteasome activator subunit 1		proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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