Srpra (SRP receptor subunit alpha) - Rat Genome Database

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Gene: Srpra (SRP receptor subunit alpha) Chinchilla lanigera
Analyze
Symbol: Srpra
Name: SRP receptor subunit alpha
RGD ID: 8746012
Description: ASSOCIATED WITH Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); genetic disease (ortholog); FOUND IN membrane (ortholog); signal recognition particle receptor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: signal recognition particle receptor (docking protein); signal recognition particle receptor subunit alpha; SRP receptor alpha subunit; Srpr
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541227,287,368 - 27,293,362 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541227,287,359 - 27,293,362 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Srpra
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541227,287,368 - 27,293,362 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541227,287,359 - 27,293,362 (-)NCBIChiLan1.0ChiLan1.0
SRPRA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811126,235,930 - 126,268,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11126,262,938 - 126,269,144 (-)EnsemblGRCh38hg38GRCh38
GRCh3711126,132,833 - 126,138,790 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,638,043 - 125,643,960 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411125,638,042 - 125,643,960NCBI
Celera11123,297,838 - 123,303,901 (-)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11122,075,206 - 122,081,269 (-)NCBIHuRef
CHM1_111126,019,105 - 126,025,168 (-)NCBICHM1_1
T2T-CHM13v2.011126,265,417 - 126,298,379 (-)NCBIT2T-CHM13v2.0
Srpra
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,122,499 - 35,128,299 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl935,111,471 - 35,159,269 (+)EnsemblGRCm39 Ensembl
GRCm38935,211,203 - 35,217,003 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,200,175 - 35,247,973 (+)EnsemblGRCm38mm10GRCm38
MGSCv37935,018,788 - 35,024,588 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36934,960,874 - 34,966,674 (+)NCBIMGSCv36mm8
Celera932,447,922 - 32,453,726 (+)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.06NCBI
Srpra
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8841,818,199 - 41,824,292 (+)NCBIGRCr8
mRatBN7.2833,560,365 - 33,566,458 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl833,560,348 - 33,566,470 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx837,630,487 - 37,636,631 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0835,913,527 - 35,919,671 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0833,776,372 - 33,782,516 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0836,410,683 - 36,416,766 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,410,683 - 36,416,296 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0836,428,866 - 36,434,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4834,992,187 - 34,998,270 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1835,000,954 - 35,007,031 (+)NCBI
Celera834,979,915 - 34,986,044 (+)NCBICelera
Cytogenetic Map8q21NCBI
SRPRA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29126,938,808 - 126,952,604 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111128,048,049 - 128,060,239 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011121,071,054 - 121,083,106 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111124,987,307 - 124,993,347 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11124,987,307 - 124,993,347 (-)Ensemblpanpan1.1panPan2
SRPRA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,247,608 - 8,253,411 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,224,416 - 8,254,792 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha58,308,830 - 8,314,605 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.058,203,219 - 8,208,993 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl58,203,231 - 8,208,989 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.158,272,836 - 8,278,587 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.058,246,523 - 8,252,291 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.058,280,726 - 8,286,491 (+)NCBIUU_Cfam_GSD_1.0
Srpra
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,493,753 - 108,499,710 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365725,950,530 - 5,958,025 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365725,950,608 - 5,956,620 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRPRA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,358,534 - 53,365,653 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,358,522 - 53,365,085 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2958,968,922 - 58,974,223 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRPRA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,388,341 - 117,394,358 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1117,387,044 - 117,394,415 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660438,677,830 - 8,683,823 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srpra
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624812416,727 - 422,823 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624812416,727 - 422,820 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000024762   ⟹   ENSCLAP00000024526
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541227,287,368 - 27,293,362 (-)Ensembl
RefSeq Acc Id: XM_005378499   ⟹   XP_005378556
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541227,287,359 - 27,293,362 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005378556 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024526
  ENSCLAP00000024526.1
Reference Protein Sequences
RefSeq Acc Id: XP_005378556   ⟸   XM_005378499
- UniProtKB: A0A8C2WBE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000024526   ⟸   ENSCLAT00000024762
Protein Domains
SRP54-type proteins GTP-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016839 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024762 ENTREZGENE
  ENSCLAT00000024762.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.140 UniProtKB/TrEMBL
  3.30.450.60 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  Longin-like_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sig_recog_particle_rcpt_asu_N UniProtKB/TrEMBL
  Signal_recog_particl_SRP54_hlx UniProtKB/TrEMBL
  SRP/SRP_N UniProtKB/TrEMBL
  SRP54_GTPase_dom UniProtKB/TrEMBL
  SRP54_N_sf UniProtKB/TrEMBL
NCBI Gene Srpr ENTREZGENE
PANTHER SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA UniProtKB/TrEMBL
  SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA UniProtKB/TrEMBL
Pfam SRP-alpha_N UniProtKB/TrEMBL
  SRP54 UniProtKB/TrEMBL
  SRP54_N UniProtKB/TrEMBL
PROSITE SRP54 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
  SRP54 UniProtKB/TrEMBL
  SRP54_N UniProtKB/TrEMBL
Superfamily-SCOP SSF47364 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF64356 UniProtKB/TrEMBL
UniProt A0A8C2WBE2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 Srpra  SRP receptor subunit alpha    SRP receptor alpha subunit  Symbol and/or name change 5135510 APPROVED
2016-08-16 Srpra  SRP receptor alpha subunit  Srpr  signal recognition particle receptor (docking protein)  Symbol and/or name change 5135510 APPROVED