Rtn3 (reticulon 3) - Rat Genome Database

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Gene: Rtn3 (reticulon 3) Chinchilla lanigera
Analyze
Symbol: Rtn3
Name: reticulon 3
RGD ID: 8741306
Description: INVOLVED IN endoplasmic reticulum tubular network formation (ortholog); endoplasmic reticulum tubular network organization (ortholog); negative regulation of amyloid-beta formation (ortholog); ASSOCIATED WITH chronic kidney disease (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: reticulon-3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542221,289,652 - 21,358,865 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Rtn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542221,289,652 - 21,358,865 (-)NCBIChiLan1.0ChiLan1.0
RTN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381163,681,450 - 63,759,891 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1163,681,446 - 63,759,891 (+)EnsemblGRCh38hg38GRCh38
GRCh371163,448,922 - 63,527,363 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,205,498 - 63,283,939 (+)NCBINCBI36Build 36hg18NCBI36
Build 341163,205,497 - 63,283,937NCBI
Celera1160,773,986 - 60,853,237 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1159,778,651 - 59,857,054 (+)NCBIHuRef
CHM1_11163,331,936 - 63,410,394 (+)NCBICHM1_1
T2T-CHM13v2.01163,670,790 - 63,749,258 (+)NCBIT2T-CHM13v2.0
Rtn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,403,260 - 7,460,656 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl197,403,266 - 7,460,646 (-)EnsemblGRCm39 Ensembl
GRCm38197,425,895 - 7,483,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,425,901 - 7,483,281 (-)EnsemblGRCm38mm10GRCm38
MGSCv37197,500,391 - 7,557,779 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36197,492,945 - 7,550,333 (-)NCBIMGSCv36mm8
Celera197,197,649 - 7,254,911 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.32NCBI
Rtn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,041,838 - 214,098,644 (-)NCBIGRCr8
mRatBN7.21204,612,675 - 204,669,212 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1204,612,675 - 204,669,275 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,962,466 - 213,019,047 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01220,057,890 - 220,114,408 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,748,941 - 212,805,460 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,677,359 - 222,734,307 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,677,365 - 222,734,241 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,664,608 - 229,721,539 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,109,534 - 210,166,035 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11210,267,963 - 210,324,465 (-)NCBI
Celera1202,144,880 - 202,201,397 (-)NCBICelera
Cytogenetic Map1q43NCBI
RTN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2964,908,862 - 64,987,199 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11165,954,160 - 66,032,329 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01159,039,313 - 59,117,572 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11162,391,284 - 62,468,595 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1162,391,284 - 62,468,595 (+)Ensemblpanpan1.1panPan2
RTN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,239,893 - 53,298,020 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,239,914 - 53,297,984 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,847,678 - 51,905,278 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01854,286,179 - 54,343,796 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1854,286,174 - 54,353,344 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11853,387,735 - 53,445,261 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,963,486 - 53,020,402 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,749,031 - 53,806,406 (-)NCBIUU_Cfam_GSD_1.0
Rtn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,922,051 - 8,987,765 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365995,364,406 - 5,430,076 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RTN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.128,291,750 - 8,354,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.227,558,481 - 7,714,019 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RTN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1110,485,943 - 10,559,725 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038107,829,967 - 107,904,046 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rtn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476722,500,763 - 22,558,804 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476722,498,849 - 22,558,990 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005384670   ⟹   XP_005384727
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542221,289,652 - 21,347,398 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514093   ⟹   XP_013369547
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542221,289,652 - 21,347,377 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514094   ⟹   XP_013369548
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542221,289,652 - 21,358,865 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514095   ⟹   XP_013369549
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542221,289,652 - 21,347,381 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384727 (Get FASTA)   NCBI Sequence Viewer  
  XP_013369547 (Get FASTA)   NCBI Sequence Viewer  
  XP_013369548 (Get FASTA)   NCBI Sequence Viewer  
  XP_013369549 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024468
  ENSCLAP00000024468.1
  ENSCLAP00000024469.1
RefSeq Acc Id: XP_005384727   ⟸   XM_005384670
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013369548   ⟸   XM_013514094
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013369549   ⟸   XM_013514095
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013369547   ⟸   XM_013514093
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W809 (UniProtKB/TrEMBL),   A0A8C2WA57 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Reticulon


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016800 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024703 ENTREZGENE
  ENSCLAT00000024703.1 UniProtKB/TrEMBL
  ENSCLAT00000024704.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.2480 UniProtKB/TrEMBL
InterPro Reticulon UniProtKB/TrEMBL
  RTN1-4 UniProtKB/TrEMBL
NCBI Gene Rtn3 ENTREZGENE
PANTHER RETICULON-3 UniProtKB/TrEMBL
  RETICULON-LIKE PROTEIN UniProtKB/TrEMBL
Pfam Reticulon UniProtKB/TrEMBL
PROSITE RETICULON UniProtKB/TrEMBL
UniProt A0A8C2W809 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2WA57 ENTREZGENE, UniProtKB/TrEMBL