Katnip (katanin interacting protein) - Rat Genome Database

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Gene: Katnip (katanin interacting protein) Chinchilla lanigera
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Symbol: Katnip
Name: katanin interacting protein
RGD ID: 8732907
Description: INVOLVED IN cerebrospinal fluid circulation (ortholog); ASSOCIATED WITH Joubert syndrome 1 (ortholog); Joubert Syndrome 26 (ortholog); neuronal ceroid lipofuscinosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Kiaa0556; KIAA0556 ortholog; uncharacterized protein KIAA0556 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554935,724,614 - 5,915,857 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554935,724,550 - 5,915,727 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Katnip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554935,724,614 - 5,915,857 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554935,724,550 - 5,915,727 (+)NCBIChiLan1.0ChiLan1.0
KATNIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381627,550,144 - 27,780,344 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1627,550,133 - 27,780,344 (+)EnsemblGRCh38hg38GRCh38
GRCh371627,561,465 - 27,791,665 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361627,468,971 - 27,699,190 (+)NCBINCBI36Build 36hg18NCBI36
Celera1626,338,803 - 26,569,056 (+)NCBICelera
Cytogenetic Map16p12.1NCBI
HuRef1625,649,851 - 25,882,150 (+)NCBIHuRef
CHM1_11628,573,188 - 28,804,173 (+)NCBICHM1_1
T2T-CHM13v2.01627,828,904 - 28,059,341 (+)NCBIT2T-CHM13v2.0
Katnip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397125,307,027 - 125,473,967 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7125,307,060 - 125,473,965 (+)EnsemblGRCm39 Ensembl
GRCm387125,707,855 - 125,874,795 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7125,707,888 - 125,874,793 (+)EnsemblGRCm38mm10GRCm38
MGSCv377132,851,390 - 133,018,311 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367125,499,024 - 125,665,945 (+)NCBIMGSCv36mm8
Celera7125,566,892 - 125,734,609 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.01NCBI
Katnip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81189,700,838 - 189,867,402 (+)NCBIGRCr8
mRatBN7.21180,270,194 - 180,436,766 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,269,929 - 180,436,766 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1188,607,990 - 188,774,338 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01195,794,034 - 195,960,373 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01188,477,069 - 188,643,150 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01197,098,621 - 197,265,840 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1197,098,603 - 197,265,840 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01204,083,262 - 204,250,286 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41184,797,823 - 184,935,708 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,075,237 - 185,084,330 (+)NCBI
Celera1177,969,298 - 178,105,533 (+)NCBICelera
Cytogenetic Map1q36NCBI
KATNIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21828,944,159 - 29,174,949 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11633,484,168 - 33,714,900 (+)NCBINHGRI_mPanPan1
PanPan1.11627,919,235 - 28,148,543 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1627,918,816 - 28,148,543 (+)Ensemblpanpan1.1panPan2
KATNIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1618,905,110 - 19,100,614 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl618,905,360 - 19,100,507 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha620,484,853 - 20,679,675 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0619,045,096 - 19,240,567 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl619,045,347 - 19,240,404 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1618,843,540 - 19,038,587 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0618,757,349 - 18,952,298 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0619,103,310 - 19,298,530 (-)NCBIUU_Cfam_GSD_1.0
Katnip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344123,091,406 - 123,228,747 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650111,206,486 - 11,325,189 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650111,189,400 - 11,326,594 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KATNIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl319,150,371 - 19,368,223 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1319,150,367 - 19,368,267 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KATNIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1525,252,470 - 25,484,330 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl525,252,561 - 25,484,541 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660684,210,479 - 4,444,257 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Katnip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478212,141,591 - 12,320,909 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478212,141,512 - 12,320,673 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000016224   ⟹   ENSCLAP00000016060
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554935,724,614 - 5,915,857 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000016225   ⟹   ENSCLAP00000016061
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554935,724,614 - 5,915,857 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000016226   ⟹   ENSCLAP00000016062
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554935,724,618 - 5,915,857 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000016227   ⟹   ENSCLAP00000016063
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554935,747,027 - 5,915,857 (+)Ensembl
RefSeq Acc Id: XM_005405142   ⟹   XP_005405199
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554935,724,561 - 5,915,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504820   ⟹   XP_013360274
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554935,747,809 - 5,915,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504821   ⟹   XP_013360275
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554935,724,550 - 5,915,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504822   ⟹   XP_013360276
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554935,774,142 - 5,915,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504823   ⟹   XP_013360277
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554935,724,593 - 5,915,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504824   ⟹   XP_013360278
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554935,724,561 - 5,915,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504825   ⟹   XP_013360279
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554935,724,561 - 5,915,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504826   ⟹   XP_013360280
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554935,724,557 - 5,915,727 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001231277
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554935,724,560 - 5,911,409 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005405199   ⟸   XM_005405142
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YQL1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360275   ⟸   XM_013504821
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013360280   ⟸   XM_013504826
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_013360279   ⟸   XM_013504825
- Peptide Label: isoform X6
- UniProtKB: A0A8C2VIL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360278   ⟸   XM_013504824
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VQK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360277   ⟸   XM_013504823
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013360274   ⟸   XM_013504820
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VKE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360276   ⟸   XM_013504822
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSCLAP00000016063   ⟸   ENSCLAT00000016227
Ensembl Acc Id: ENSCLAP00000016060   ⟸   ENSCLAT00000016224
Ensembl Acc Id: ENSCLAP00000016062   ⟸   ENSCLAT00000016226
Ensembl Acc Id: ENSCLAP00000016061   ⟸   ENSCLAT00000016225
Protein Domains
KATNIP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011054 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016224 ENTREZGENE
  ENSCLAT00000016224.1 UniProtKB/TrEMBL
  ENSCLAT00000016225 ENTREZGENE
  ENSCLAT00000016225.1 UniProtKB/TrEMBL
  ENSCLAT00000016226 ENTREZGENE
  ENSCLAT00000016226.1 UniProtKB/TrEMBL
  ENSCLAT00000016227 ENTREZGENE
  ENSCLAT00000016227.1 UniProtKB/TrEMBL
InterPro KATNIP UniProtKB/TrEMBL
  KATNIP_dom UniProtKB/TrEMBL
NCBI Gene Kiaa0556 ENTREZGENE
PANTHER KATANIN-INTERACTING PROTEIN UniProtKB/TrEMBL
  PTHR21534 UniProtKB/TrEMBL
Pfam DUF4457 UniProtKB/TrEMBL
UniProt A0A8C2VIL7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VKE5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VQK1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YQL1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-09-07 Katnip  katanin interacting protein  Kiaa0556  KIAA0556 ortholog  Symbol and/or name change 5135510 APPROVED