Katnip (katanin interacting protein) - Rat Genome Database

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Gene: Katnip (katanin interacting protein) Heterocephalus glaber
Analyze
Symbol: Katnip
Name: katanin interacting protein (Ensembl:KIAA0556 ortholog)
RGD ID: 18918968
Description: INVOLVED IN cerebrospinal fluid circulation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Joubert syndrome 1 (ortholog); Joubert Syndrome 26 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Kiaa0556; KIAA0556 ortholog; protein KIAA0556 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478212,141,591 - 12,320,909 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478212,141,512 - 12,320,673 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Genomics

Comparative Map Data
Katnip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478212,141,591 - 12,320,909 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478212,141,512 - 12,320,673 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KATNIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381627,550,144 - 27,780,344 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1627,550,133 - 27,780,344 (+)EnsemblGRCh38hg38GRCh38
GRCh371627,561,465 - 27,791,665 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361627,468,971 - 27,699,190 (+)NCBINCBI36Build 36hg18NCBI36
Celera1626,338,803 - 26,569,056 (+)NCBICelera
Cytogenetic Map16p12.1NCBI
HuRef1625,649,851 - 25,882,150 (+)NCBIHuRef
CHM1_11628,573,188 - 28,804,173 (+)NCBICHM1_1
T2T-CHM13v2.01627,828,904 - 28,059,341 (+)NCBIT2T-CHM13v2.0
Katnip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397125,307,027 - 125,473,967 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7125,307,060 - 125,473,965 (+)EnsemblGRCm39 Ensembl
GRCm387125,707,855 - 125,874,795 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7125,707,888 - 125,874,793 (+)EnsemblGRCm38mm10GRCm38
MGSCv377132,851,390 - 133,018,311 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367125,499,024 - 125,665,945 (+)NCBIMGSCv36mm8
Celera7125,566,892 - 125,734,609 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.01NCBI
Katnip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81189,700,838 - 189,867,402 (+)NCBIGRCr8
mRatBN7.21180,270,194 - 180,436,766 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,269,929 - 180,436,766 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1188,607,990 - 188,774,338 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01195,794,034 - 195,960,373 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01188,477,069 - 188,643,150 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01197,098,621 - 197,265,840 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1197,098,603 - 197,265,840 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01204,083,262 - 204,250,286 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41184,797,823 - 184,935,708 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,075,237 - 185,084,330 (+)NCBI
Celera1177,969,298 - 178,105,533 (+)NCBICelera
Cytogenetic Map1q36NCBI
Katnip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554935,724,614 - 5,915,857 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554935,724,550 - 5,915,727 (+)NCBIChiLan1.0ChiLan1.0
KATNIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21828,944,159 - 29,174,949 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11633,484,168 - 33,714,900 (+)NCBINHGRI_mPanPan1
PanPan1.11627,919,235 - 28,148,543 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1627,918,816 - 28,148,543 (+)Ensemblpanpan1.1panPan2
KATNIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1618,905,110 - 19,100,614 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl618,905,360 - 19,100,507 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha620,484,853 - 20,679,675 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0619,045,096 - 19,240,567 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl619,045,347 - 19,240,404 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1618,843,540 - 19,038,587 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0618,757,349 - 18,952,298 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0619,103,310 - 19,298,530 (-)NCBIUU_Cfam_GSD_1.0
Katnip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344123,091,406 - 123,228,747 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650111,206,486 - 11,325,189 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650111,189,400 - 11,326,594 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KATNIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl319,150,371 - 19,368,223 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1319,150,367 - 19,368,267 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KATNIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1525,252,470 - 25,484,330 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl525,252,561 - 25,484,541 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660684,210,479 - 4,444,257 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004855998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004856001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004856002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004856003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004856004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004856005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004856006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004856007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021237364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002386591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002386592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_205721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01059550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000022909   ⟹   ENSHGLP00000022695
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478212,141,591 - 12,320,909 (+)Ensembl
RefSeq Acc Id: XM_004855998   ⟹   XP_004856055
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,534 - 12,320,673 (+)NCBI
RefSeq Acc Id: XM_004856001   ⟹   XP_004856058
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,516 - 12,320,673 (+)NCBI
RefSeq Acc Id: XM_004856002   ⟹   XP_004856059
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,513 - 12,320,673 (+)NCBI
RefSeq Acc Id: XM_004856003   ⟹   XP_004856060
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,512 - 12,320,673 (+)NCBI
RefSeq Acc Id: XM_004856004   ⟹   XP_004856061
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,525 - 12,320,673 (+)NCBI
RefSeq Acc Id: XM_004856005   ⟹   XP_004856062
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,534 - 12,320,673 (+)NCBI
RefSeq Acc Id: XM_004856006   ⟹   XP_004856063
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,531 - 12,318,011 (+)NCBI
RefSeq Acc Id: XM_004856007   ⟹   XP_004856064
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,205,598 - 12,320,673 (+)NCBI
RefSeq Acc Id: XM_021237358   ⟹   XP_021093017
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,556 - 12,320,673 (+)NCBI
RefSeq Acc Id: XM_021237359   ⟹   XP_021093018
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,187,075 - 12,320,673 (+)NCBI
RefSeq Acc Id: XM_021237360   ⟹   XP_021093019
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,534 - 12,320,673 (+)NCBI
RefSeq Acc Id: XM_021237361   ⟹   XP_021093020
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,515 - 12,320,673 (+)NCBI
RefSeq Acc Id: XM_021237362   ⟹   XP_021093021
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,162,139 - 12,320,673 (+)NCBI
RefSeq Acc Id: XM_021237363   ⟹   XP_021093022
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,529 - 12,309,694 (+)NCBI
RefSeq Acc Id: XM_021237364   ⟹   XP_021093023
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,246,635 - 12,320,673 (+)NCBI
RefSeq Acc Id: XR_002386591
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,530 - 12,315,164 (+)NCBI
RefSeq Acc Id: XR_002386592
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,530 - 12,312,512 (+)NCBI
RefSeq Acc Id: XR_205721
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478212,141,534 - 12,320,673 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004856060   ⟸   XM_004856003
- Peptide Label: isoform X5
- UniProtKB: G5AJV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856059   ⟸   XM_004856002
- Peptide Label: isoform X4
- UniProtKB: G5AJV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093020   ⟸   XM_021237361
- Peptide Label: isoform X9
- UniProtKB: G5AJV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856058   ⟸   XM_004856001
- Peptide Label: isoform X2
- UniProtKB: G5AJV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856061   ⟸   XM_004856004
- Peptide Label: isoform X6
- UniProtKB: G5AJV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093022   ⟸   XM_021237363
- Peptide Label: isoform X12
RefSeq Acc Id: XP_004856063   ⟸   XM_004856006
- Peptide Label: isoform X10
- UniProtKB: G5AJV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856055   ⟸   XM_004855998
- Peptide Label: isoform X1
- UniProtKB: G5AJV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093019   ⟸   XM_021237360
- Peptide Label: isoform X8
- UniProtKB: G5AJV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856062   ⟸   XM_004856005
- Peptide Label: isoform X7
- UniProtKB: G5AJV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093017   ⟸   XM_021237358
- Peptide Label: isoform X1
- UniProtKB: G5AJV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093021   ⟸   XM_021237362
- Peptide Label: isoform X11
- UniProtKB: G5AJV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093018   ⟸   XM_021237359
- Peptide Label: isoform X3
- UniProtKB: G5AJV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856064   ⟸   XM_004856007
- Peptide Label: isoform X11
- UniProtKB: G5AJV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093023   ⟸   XM_021237364
- Peptide Label: isoform X13
RefSeq Acc Id: ENSHGLP00000022695   ⟸   ENSHGLT00000022909


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016183 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000022909 ENTREZGENE
InterPro KATNIP UniProtKB/TrEMBL
  KATNIP_dom UniProtKB/TrEMBL
NCBI Gene Kiaa0556 ENTREZGENE
PANTHER KATANIN-INTERACTING PROTEIN UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam DUF4457 UniProtKB/TrEMBL
UniProt G5AJV3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-14 Katnip  katanin interacting protein  Kiaa0556  KIAA0556 ortholog  Symbol and/or name change 5135510 APPROVED