Trim47 (tripartite motif containing 47) - Rat Genome Database

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Gene: Trim47 (tripartite motif containing 47) Chinchilla lanigera
Analyze
Symbol: Trim47
Name: tripartite motif containing 47
RGD ID: 8716160
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); regulation of postsynapse assembly (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Experimental Neoplasms (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); postsynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tripartite motif-containing protein 47
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,379,088 - 6,385,446 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555066,379,088 - 6,383,671 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Trim47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,379,088 - 6,385,446 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555066,379,088 - 6,383,671 (+)NCBIChiLan1.0ChiLan1.0
TRIM47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,874,164 - 75,878,581 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,874,164 - 75,878,581 (-)EnsemblGRCh38hg38GRCh38
GRCh371773,870,245 - 73,874,662 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,381,840 - 71,386,251 (-)NCBINCBI36Build 36hg18NCBI36
Build 341771,381,841 - 71,386,251NCBI
Celera1770,460,294 - 70,464,705 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,295,889 - 69,300,300 (-)NCBIHuRef
CHM1_11773,935,205 - 73,939,617 (-)NCBICHM1_1
T2T-CHM13v2.01776,767,314 - 76,771,775 (-)NCBIT2T-CHM13v2.0
Trim47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,996,576 - 116,001,061 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,996,578 - 116,018,036 (-)EnsemblGRCm39 Ensembl
GRCm3811116,105,750 - 116,110,235 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,105,752 - 116,127,210 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,967,140 - 115,971,330 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,921,849 - 115,926,298 (-)NCBIMGSCv36mm8
Celera11127,869,116 - 127,873,315 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.91NCBI
Trim47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,836,465 - 101,840,936 (-)NCBIGRCr8
mRatBN7.210101,337,573 - 101,342,044 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,337,573 - 101,342,044 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10106,399,062 - 106,403,533 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,862,154 - 105,866,625 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,258,492 - 101,262,963 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010104,654,717 - 104,659,188 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,654,717 - 104,659,188 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010103,626,183 - 103,630,654 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,211,265 - 106,215,736 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1099,911,258 - 99,915,729 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
TRIM47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,918,356 - 91,922,806 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,743,059 - 96,747,563 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,824,959 - 69,829,442 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,375,749 - 75,380,031 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,376,071 - 75,379,964 (-)Ensemblpanpan1.1panPan2
TRIM47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,718,806 - 4,731,121 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,726,249 - 4,730,790 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,406,720 - 5,411,258 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,396,740 - 5,401,287 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,396,459 - 5,401,302 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,436,492 - 5,441,029 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,546,182 - 5,550,719 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,606,839 - 5,611,364 (+)NCBIUU_Cfam_GSD_1.0
Trim47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,359,668 - 5,362,651 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,049,470 - 1,053,515 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365941,049,308 - 1,053,533 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,535,236 - 5,539,715 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,535,259 - 5,539,721 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,491,990 - 5,496,460 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,806,945 - 45,811,468 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,806,991 - 45,811,469 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607716,560,908 - 16,565,442 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248015,761,584 - 5,765,873 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248015,761,584 - 5,765,866 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000011959   ⟹   ENSCLAP00000011821
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555066,379,088 - 6,385,446 (+)Ensembl
RefSeq Acc Id: XM_005407473   ⟹   XP_005407530
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555066,379,088 - 6,383,671 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407530 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011821
  ENSCLAP00000011821.1
RefSeq Acc Id: XP_005407530   ⟸   XM_005407473
- UniProtKB: A0A8C2YNK6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000011821   ⟸   ENSCLAT00000011959
Protein Domains
B box-type   B30.2/SPRY   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008148 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011959 ENTREZGENE
  ENSCLAT00000011959.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  4.10.830.40 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  E3_ubiq-ligase_TRIM/RNF UniProtKB/TrEMBL
  TRIM47_SPRY_PRY UniProtKB/TrEMBL
  Znf-RING_LisH UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene Trim47 ENTREZGENE
PANTHER B-BOX DOMAIN CONTAINING UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE TRIM47 UniProtKB/TrEMBL
Pfam zf-B_box UniProtKB/TrEMBL
  zf-RING_UBOX UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A8C2YNK6 ENTREZGENE, UniProtKB/TrEMBL