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Gene: Trim47 (tripartite motif-containing 47) Rattus norvegicus
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Symbol: Trim47
Name: tripartite motif-containing 47
Description: Predicted to have ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Predicted to localize to the cytosol. Orthologous to human TRIM47 (tripartite motif containing 47); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC690374; similar to Tripartite motif protein 47; tripartite motif protein 47; tripartite motif-containing protein 47
Orthologs:
Homo sapiens (human) : TRIM47 (tripartite motif containing 47)  HGNC  Alliance
Mus musculus (house mouse) : Trim47 (tripartite motif-containing 47)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Trim47 (tripartite motif containing 47)
Pan paniscus (bonobo/pygmy chimpanzee) : TRIM47 (tripartite motif containing 47)
Canis lupus familiaris (dog) : TRIM47 (tripartite motif containing 47)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trim47 (tripartite motif containing 47)
Sus scrofa (pig) : TRIM47 (tripartite motif containing 47)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.010104,654,717 - 104,659,188 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010103,626,183 - 103,630,654 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,211,265 - 106,215,736 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1099,911,258 - 99,915,729 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Trim47
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1597317
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.