Stard7 (StAR related lipid transfer domain containing 7) - Rat Genome Database

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Gene: Stard7 (StAR related lipid transfer domain containing 7) Chinchilla lanigera
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Symbol: Stard7
Name: StAR related lipid transfer domain containing 7
RGD ID: 8712066
Description: ENCODES a protein that exhibits molecular carrier activity (ortholog); INVOLVED IN establishment of skin barrier (ortholog); inflammatory response (ortholog); mucociliary clearance (ortholog); ASSOCIATED WITH familial adult myoclonic epilepsy 2 (ortholog); intellectual disability (ortholog); pheochromocytoma (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: StAR-related lipid transfer (START) domain containing 7; stAR-related lipid transfer protein 7, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,770,817 - 3,790,667 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,771,410 - 3,790,667 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stard7Chinchillafamilial adult myoclonic epilepsy 2  ISOSTARD7 (Homo sapiens)8554872ClinVar Annotator: match by term: Epilepsy more ...ClinVarPMID:25741868
Stard7Chinchillaintellectual disability  ISOSTARD7 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Stard7Chinchillapheochromocytoma  ISOSTARD7 (Homo sapiens)8554872ClinVar Annotator: match by term: PheochromocytomaClinVarPMID:20301715
Stard7Chinchillaschizophrenia  ISOSTARD7 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stard7Chinchillafamilial adult myoclonic epilepsy 2  ISOSTARD7 (Homo sapiens)7240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stard7Chinchillaestablishment of skin barrier acts_upstream_of_or_withinISOMGI:44336669068941 PMID:25980009MGIPMID:25980009
Stard7Chinchillainflammatory response acts_upstream_of_or_withinISOMGI:44336669068941 PMID:25980009MGIPMID:25980009
Stard7Chinchillamucociliary clearance acts_upstream_of_or_withinISOMGI:44336669068941 PMID:25980009MGIPMID:25980009
Stard7Chinchillamyeloid dendritic cell activation acts_upstream_of_or_withinISOMGI:44336669068941 PMID:25980009MGIPMID:25980009
Stard7Chinchillatype 2 immune response acts_upstream_of_or_withinISOMGI:44336669068941 PMID:25980009MGIPMID:25980009

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stard7Chinchillacytoplasm located_inISOStard7 (Mus musculus)9068941 PMID:25980009MGIPMID:25980009
Stard7Chinchillamitochondrion located_inISOSTARD7 (Homo sapiens)9068941 PMID:34800366FlyBasePMID:34800366

Molecular Function

  


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:22301074  



Stard7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,770,817 - 3,790,667 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,771,410 - 3,790,667 (-)NCBIChiLan1.0ChiLan1.0
STARD7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38296,184,859 - 96,208,827 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl296,184,859 - 96,208,827 (-)EnsemblGRCh38hg38GRCh38
GRCh37296,850,597 - 96,874,565 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,214,324 - 96,238,300 (-)NCBINCBI36Build 36hg18NCBI36
Build 34296,272,478 - 96,296,437NCBI
Celera291,291,407 - 91,315,383 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef290,811,956 - 90,836,005 (-)NCBIHuRef
CHM1_1296,854,939 - 96,878,926 (-)NCBICHM1_1
T2T-CHM13v2.0296,691,466 - 96,715,435 (-)NCBIT2T-CHM13v2.0
Stard7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392127,112,123 - 127,140,855 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2127,112,138 - 127,140,852 (+)EnsemblGRCm39 Ensembl
GRCm382127,270,202 - 127,298,935 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2127,270,218 - 127,298,932 (+)EnsemblGRCm38mm10GRCm38
MGSCv372127,095,965 - 127,124,670 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362126,961,680 - 126,990,374 (+)NCBIMGSCv36mm8
Celera2128,509,611 - 128,538,273 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.88NCBI
Stard7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,935,602 - 134,969,140 (+)NCBIGRCr8
mRatBN7.23114,487,161 - 114,515,828 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3114,485,600 - 114,515,813 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3118,378,715 - 118,407,260 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,974,259 - 127,002,811 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03124,634,639 - 124,663,185 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,698,655 - 119,727,303 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,698,652 - 119,727,347 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03126,224,026 - 126,252,674 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43114,768,201 - 114,795,440 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13114,671,196 - 114,702,430 (+)NCBI
Celera3113,327,785 - 113,353,643 (+)NCBICelera
Cytogenetic Map3q36NCBI
STARD7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21232,100,004 - 32,123,672 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A32,102,770 - 32,126,432 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A103,106,863 - 103,130,490 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A97,109,537 - 97,132,081 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,111,420 - 97,132,081 (-)Ensemblpanpan1.1panPan2
STARD7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,534,036 - 34,562,733 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1734,534,529 - 34,554,994 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1734,303,763 - 34,332,453 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01735,305,062 - 35,333,958 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1735,305,549 - 35,329,392 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11734,434,402 - 34,463,345 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,502,811 - 34,531,457 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,709,654 - 34,738,561 (+)NCBIUU_Cfam_GSD_1.0
Stard7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629283,049,295 - 83,076,182 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936744302,238 - 328,852 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936744302,238 - 329,189 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl346,992,777 - 47,019,206 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1346,992,708 - 47,017,668 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,121,946 - 49,159,690 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STARD7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114613,118 - 636,542 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14611,299 - 636,499 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041168,040,059 - 168,063,367 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stard7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,294,141 - 2,312,559 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247492,289,591 - 2,312,423 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.





RefSeq Transcripts XM_005400653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01052711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDJ01087829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCLAT00000014436   ⟹   ENSCLAP00000014278
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554703,770,817 - 3,790,667 (-)Ensembl
RefSeq Acc Id: XM_005400653   ⟹   XP_005400710
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554703,771,410 - 3,790,667 (-)NCBI
Sequence:
Protein RefSeqs XP_005400710 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014278
  ENSCLAP00000014278.1
RefSeq Acc Id: XP_005400710   ⟸   XM_005400653
- UniProtKB: A0A8C2VE89 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000014278   ⟸   ENSCLAT00000014436
START



1 to 16 of 16 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000009844 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014436 ENTREZGENE
  ENSCLAT00000014436.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.530.20 UniProtKB/TrEMBL
InterPro START-like_dom_sf UniProtKB/TrEMBL
  START_lipid-bd_dom UniProtKB/TrEMBL
  START_lipid_transfer UniProtKB/TrEMBL
  START_STARD7 UniProtKB/TrEMBL
NCBI Gene Stard7 ENTREZGENE
PANTHER PHOSPHATIDYLCHOLINE TRANSFER PROTEIN UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 7, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam START UniProtKB/TrEMBL
PROSITE START UniProtKB/TrEMBL
SMART START UniProtKB/TrEMBL
Superfamily-SCOP Bet v1-like UniProtKB/TrEMBL
UniProt A0A8C2VE89 ENTREZGENE, UniProtKB/TrEMBL
1 to 16 of 16 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Stard7  StAR related lipid transfer domain containing 7    StAR-related lipid transfer (START) domain containing 7  Symbol and/or name change 5135510 APPROVED