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Gene: PCAT19 (prostate cancer associated transcript 19) Homo sapiens

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Symbol:

PCAT19

Name:

prostate cancer associated transcript 19

RGD ID:

7943681

HGNC Page

HGNC:49593

Description:

INTERACTS WITH 4,4'-sulfonyldiphenol; bisphenol A; fipronil

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

LINC01190; prostate cancer associated transcript 19 (non-protein coding)

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	41,454,169 - 41,500,649 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	41,449,520 - 41,502,015 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	41,960,074 - 42,006,559 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Celera	19	38,755,282 - 38,806,407 (-)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	38,391,679 - 38,438,155 (-)	NCBI		HuRef
CHM1_1	19	41,959,704 - 42,006,179 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	44,275,440 - 44,321,937 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PCAT19	Human	4,4'-sulfonyldiphenol	increases methylation	EXP		6480464	bisphenol S results in increased methylation of PCAT19 gene	CTD	PMID:31601247
PCAT19	Human	bisphenol A	decreases methylation	EXP		6480464	bisphenol A results in decreased methylation of PCAT19 gene	CTD	PMID:31601247
PCAT19	Human	fipronil	multiple interactions	EXP		6480464	[fipronil co-treated with DEET] results in decreased expression of PCAT19 mRNA	CTD	PMID:28991164
PCAT19	Human	N,N-diethyl-m-toluamide	multiple interactions	EXP		6480464	[fipronil co-treated with DEET] results in decreased expression of PCAT19 mRNA	CTD	PMID:28991164

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations

PMID:12477932	PMID:23065704	PMID:24497837	PMID:30033362	PMID:30868666	PMID:32980991	PMID:35615401	PMID:36017918	PMID:36992525

Variants in PCAT19
4 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 19p13.2-q13.31(chr19:11227942-44626354)x3	copy number gain	See cases [RCV000133888]	Chr19:11227942..44626354 [GRCh38] Chr19:11338618..45129651 [GRCh37] Chr19:11199618..49821491 [NCBI36] Chr19:19p13.2-q13.31	pathogenic
NR_040109.1(PCAT19):n.1154-2351C>A	single nucleotide variant	Lung cancer [RCV000101263]	Chr19:41458838 [GRCh38] Chr19:41964744 [GRCh37] Chr19:19q13.2	uncertain significance
NR_040109.1(PCAT19):n.469A>G	single nucleotide variant	Lung cancer [RCV000101264]	Chr19:41495020 [GRCh38] Chr19:42000928 [GRCh37] Chr19:19q13.2	uncertain significance
GRCh38/hg38 19q13.12-13.2(chr19:37319377-42738688)x3	copy number gain	See cases [RCV000050636]	Chr19:37319377..42738688 [GRCh38] Chr19:37810279..43242840 [GRCh37] Chr19:42502119..47934680 [NCBI36] Chr19:19q13.12-13.2	pathogenic

Predicted Target Of

	Summary Value
Count of predictions:	1186
Count of miRNA genes:	693
Interacting mature miRNAs:	793
Transcripts:	ENST00000588495, ENST00000594315, ENST00000595063, ENST00000595837, ENST00000597702, ENST00000598215, ENST00000599801
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
597371737	GWAS1467811_H	prostate carcinoma QTL GWAS1467811 (human)		2e-12	prostate carcinoma		19	41479679	41479680	Human
597475550	GWAS1571624_H	prostate carcinoma QTL GWAS1571624 (human)		1e-22	prostate carcinoma		19	41480023	41480024	Human
597371736	GWAS1467810_H	prostate carcinoma QTL GWAS1467810 (human)		1e-08	prostate carcinoma		19	41479679	41479680	Human
597433942	GWAS1530016_H	testosterone measurement QTL GWAS1530016 (human)		6e-19	testosterone measurement	serum testosterone level (CMO:0000568)	19	41480023	41480024	Human
597430103	GWAS1526177_H	testosterone measurement QTL GWAS1526177 (human)		5e-17	testosterone measurement	serum testosterone level (CMO:0000568)	19	41480023	41480024	Human
597446416	GWAS1542490_H	testosterone measurement QTL GWAS1542490 (human)		5e-10	testosterone measurement	serum testosterone level (CMO:0000568)	19	41480023	41480024	Human
597409430	GWAS1505504_H	non-high density lipoprotein cholesterol measurement QTL GWAS1505504 (human)		7e-11	non-high density lipoprotein cholesterol measurement	blood non-high density lipoprotein cholesterol level (CMO:0003967)	19	41463800	41463801	Human
597410635	GWAS1506709_H	prostate carcinoma QTL GWAS1506709 (human)		2e-23	prostate carcinoma		19	41479679	41479680	Human
597442092	GWAS1538166_H	testosterone measurement QTL GWAS1538166 (human)		1e-12	testosterone measurement	serum testosterone level (CMO:0000568)	19	41480023	41480024	Human
1559110	SCL22_H	Serum cholesterol level QTL 22 (human)	3.59	0.000241	Lipid level	LDL cholesterol	19	31907594	57907594	Human
597395374	GWAS1491448_H	non-high density lipoprotein cholesterol measurement QTL GWAS1491448 (human)		2e-10	non-high density lipoprotein cholesterol measurement	blood non-high density lipoprotein cholesterol level (CMO:0003967)	19	41463800	41463801	Human
597423853	GWAS1519927_H	testosterone measurement QTL GWAS1519927 (human)		4e-11	testosterone measurement	serum testosterone level (CMO:0000568)	19	41479679	41479680	Human
597526762	GWAS1622836_H	prostate carcinoma QTL GWAS1622836 (human)		2e-35	prostate carcinoma		19	41480023	41480024	Human
597514405	GWAS1610479_H	testosterone measurement QTL GWAS1610479 (human)		2e-12	testosterone measurement	serum testosterone level (CMO:0000568)	19	41480023	41480024	Human
1331657	COPD9_H	Chronic obstructive pulmonary disease QTL 9 (human)	1.94		Chronic airflow obstruction	post-bronchodilator FEV1	19	31021760	57021760	Human
597498944	GWAS1595018_H	prostate carcinoma QTL GWAS1595018 (human)		2e-36	prostate carcinoma		19	41480023	41480024	Human

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system
1204	2396	2788	2237	4820	1715	2287	4	617	1479	459	2159	6780	5986	44	3697	836	1703	1561	168


RefSeq Transcripts	NR_040109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_136334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001756399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001756400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002958911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC005795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC005945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC011526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC243960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK309432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC070102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000588495

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,164 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000594315

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,455,020 - 41,500,646 (-)	Ensembl

Ensembl Acc Id:

ENST00000595063

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,455,665 - 41,479,141 (-)	Ensembl

Ensembl Acc Id:

ENST00000595837

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,455,317 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000597702

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,455,257 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000598215

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,456,029 - 41,500,645 (-)	Ensembl

Ensembl Acc Id:

ENST00000599801

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,481 - 41,479,141 (-)	Ensembl

Ensembl Acc Id:

ENST00000650748

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000650788

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000650804

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,500,679 (-)	Ensembl

Ensembl Acc Id:

ENST00000650991

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,493,913 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000651016

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,500,667 (-)	Ensembl

Ensembl Acc Id:

ENST00000651156

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,500,649 (-)	Ensembl

Ensembl Acc Id:

ENST00000651285

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,457,149 (-)	Ensembl

Ensembl Acc Id:

ENST00000651291

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,457,386 (-)	Ensembl

Ensembl Acc Id:

ENST00000651464

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,457,155 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000651572

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,502,015 (-)	Ensembl

Ensembl Acc Id:

ENST00000651651

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,500,629 (-)	Ensembl

Ensembl Acc Id:

ENST00000651712

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,173 - 41,457,299 (-)	Ensembl

Ensembl Acc Id:

ENST00000651789

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,173 - 41,479,141 (-)	Ensembl

Ensembl Acc Id:

ENST00000651806

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000651979

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,477,169 - 41,500,641 (-)	Ensembl

Ensembl Acc Id:

ENST00000652015

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000652127

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,457,280 (-)	Ensembl

Ensembl Acc Id:

ENST00000652144

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,500,649 (-)	Ensembl

Ensembl Acc Id:

ENST00000652160

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,455,713 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000652279

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,173 - 41,457,400 (-)	Ensembl

Ensembl Acc Id:

ENST00000652333

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,449,520 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000652406

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,164 - 41,500,657 (-)	Ensembl

Ensembl Acc Id:

ENST00000652484

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,479,776 (-)	Ensembl

Ensembl Acc Id:

ENST00000652511

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,457,149 (-)	Ensembl

Ensembl Acc Id:

ENST00000652558

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000656967

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000664904

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000668141

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,457,282 (-)	Ensembl

Ensembl Acc Id:

ENST00000783813

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,454,169 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000783814

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,479,128 - 41,500,646 (-)	Ensembl

Ensembl Acc Id:

ENST00000783815

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,479,128 - 41,500,646 (-)	Ensembl

Ensembl Acc Id:

ENST00000783816

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,479,128 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000783817

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,479,128 - 41,500,644 (-)	Ensembl

Ensembl Acc Id:

ENST00000783818

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,479,128 - 41,480,545 (-)	Ensembl

Ensembl Acc Id:

ENST00000783819

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,500,631 - 41,501,255 (-)	Ensembl

Ensembl Acc Id:

ENST00000783820

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	41,479,128 - 41,479,748 (-)	Ensembl

RefSeq Acc Id:

NR_040109

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	41,454,169 - 41,500,649 (-)	NCBI
GRCh37	19	41,960,074 - 42,006,554 (-)	NCBI
HuRef	19	38,391,679 - 38,438,155 (-)	NCBI
CHM1_1	19	41,959,704 - 42,006,184 (-)	NCBI
T2T-CHM13v2.0	19	44,275,440 - 44,321,937 (-)	NCBI

Sequence:

show sequence

AAAGTGTTATTTGACTGGAGTGAGGTCTCATGTCTGCTTATGCGGTGGCTCGCTGCTCAGAACAGGATGGCAGAGATGAGCACCACCATCAAAAACTCAAGGACCAGTGCTGTGGGTCCAGTCATCTG
TTTCATGGAATTCACCAGTCTGGTATCTTCAAAATCCAGAAGGATGATGGCAGATGGCAGGAAGGTAATGCAAACGTCATCAGGTGTGACCCCACTGTAGCAGCTGTGATGGATGTTTTCTCTCACCA
TAGCAATAAATAACACAACCTCGGTCACACTGTATGCATTGTTGGTCTGCAAAATCCATGTTTTGCAAAACTCTTCAGGAAGGTGGATCTGTAATATTGGCATTGACATGAGAACAACAGCAGTATTT
ATTCACAATCTCAAGCTCTCTGTCTTCCCGTCTCTCTCATTAGCCATCCAAGTAGTCCTGAGGAACCAAGCCCATCAGAACATTCTGCAACATAATACACAGCTCCATTCTCCATTCAAATTTTGTTG
TTGTTGTTGTTGTTGATGAGACAACATCTTACTCCATCAGCCAGGCTGACGTACAGTGGGGCTATCTGGGCTGACTGTAGTCTTGAGCTTCCAGGCTCAAGGCATCCTCTCACCTCAGCCTCCTAAGT
GGCTTGAACTACAGACACACAGCGACATGCTGGGCTAGTTTTTGTATATTTTGTAGAGACGTGCTCTCACCATGTTATTCAGGCTGGACTCAAACTCCTGAGCGTAAGTGATCCAAGCACCTTGGCCT
CAAAGTGCTGAGATTACAAGCCTGAGCCACTGCACCCAGCCCAATCTCCATTCTACTGATAACAATGTCATTACCAGGTCTGATGGACAGGAAATGGTAAGGTTTCTGAAAACCTAAGGATCACACAG
CGAGTTCCAAAGGCTGAAAGTGCATACCTGTCGACACTGATACCAATGACATCCAATGGAGGAAGAGGGTAATCTGGAAGAGTTTCCTGACCTACTCTGCTGCTGTGATTAAACAACCACCAGGAAAT
TTTGATGACACTGTTCTCCTGAGCTCCTCCCTTTCCTCGGGGAAGAAAAGCATTGAAACTACAAAAATAAAGTGTTATTTGGCTGGAGTGAGGTCTCATGTCTGCTTATGCGGTGGCTCGCTGCTCAG
AACAGGGAACCATTGGAGATACTCATTACTCTTTGAAGGCTTACAGTGGAATGAATTCAAATACGACTTATTTGAGGAATTGAAGTTGACTTTATGGAGCTGATAAGAATCTTCTTGGAGAAAAAAAG
ACTGGGTATATTTTCAATATGCTTTCCTTTTAAGGTCCCTCACCTGTGGAAAGTAAAGAATGTCACTTTCTGACAGGCTCAGGAACCTCAAGTTATGTAGGGATCTCAAGAAGATGGGGGAATTCACC
CAGTTCATACAGGTGAAATTGCTGTTGCAAAGATTATGAATATGAGAGAAGTCCAGCATGGCTGACTTCATCTCGTGTCTGGCCTCAGGCTGGCTGCCCTTGCTCACTCTTGGGCATAGGCCAAGCTA
GCCATGGGAGGAATTTAGTTTATAGTTTAACTTTGAAGCACGGATGATAATAGTCTCTCCCTAAAATGAACCCCTTCCTTGCTCAGGGACTGAAACTACCTTTGTATGACAAATGAAAGCCCACAAGA
TTAAGATTATGAGAGGGGCCTGAATTCTGCTAAAATGCAGGTGTAGCTGACTGATAACAAGTCATTGTCCCACAGCTTGCCTTTCTATAATCTCTTGCTTCTCAGGAGTCACATGGCCAGAGGTCCTG
AGATTTCCAGTCCTGTGACCCCCACCCAGAGATGGACTTAGTGCATGAGGACCATTTTCCACACCCCTATGATTTCATCCTCAAACAATCAGCAGCAACCATTCCCTAGCCCCCTGCCTTCCAAATTA
TCCATAAAAATCCTAGCCTCTGAGTTATTAGGGAGATTGATTAATAATCCCAGTCCTACCCCTTGGGTTGCTCTGATTTAATTAAACCTTCTCTACTGCAATACCACGGACTCAGTAAATTGGTTTTG
TCTGTGCAATGGGCAAGAAGAACATGTTGCATGGTTATACAGGTACTACAAGCACAGTCTGATGGCAAATTATTGGTTTTGCTTCCTGCCCTTGATGTTTCTAAACATCTAGTCCAAAATTACTTGTG
AAAGGTCCAGCAAAGCCAATTTTAAAAGAGGCTATATGGCCAATCACTATTCTTTCTACACATTATTGCAAATAATCAGGCCACGGCTGGGCACGGTGGCTCATGCCTGCAATCCCAGCACTTTGGGA
GGCTGAGGCAGGATCACCTGAAATCAGGAGTTCAAGACCAGCCTAGGCAACATGATAAAACCCTGTCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCATGCACCTGTAATCCCAGCTACTTG
GGAGACTGAGGGAGGAGAATCACTTGAACCTGGGAGGCAGAGATTGCAGTGAGCTGAGATCACACCACTGCACTCCAGCCTGGGCAATAGAGTGAGACTTTGTCTCAAATAATAATAATAATAATCAG
ACCAAGTATAATGAAATTAAAATTTATTTTGCAAATAAATTGGTCCTACTACAATTTATCCTTCATAGAAATGTGGAAACTGAAGATAAAAAAAATTAGGTTTCAGAAGAAAACTATACTACACCTGT
TATTAGATTCTAGCCCTAAACATTGTTTTTGAGGTTTTTATTATTTACCTGCAATTTGGTCTAAATTCTGAATTATTTCCTGACTACAAGTATCCAAGGAATAAATGGGTTTTCTTTTTCTTTATGAT
AGTTTTAGTTGGCTTCTAATGCAACAACAATTTTTATTGTAATCCTGTGTGCATTCTATTCCTACTATTCAAATTATTAATGTTATAGATCTTTCATTGTAGTACTTCTGAATTAACCAAAATCACAG
TATTCTGAAGATGATTCTACAAAGCCTGCTGTTTCTACAAAGGCTGCTGATGATTTCTACAAAGCCTGCTGTAGTGTTGCTGTGGCCTCTGCTTAAAAAAGTAGAAAACACATTGATGCAGCATGTTC
ACCCCAACCTCCCTGCCTAAAGGCTCAGGGACCATCTTGGAAGAGGAAGGCGCGTGAGATTGTAAGAGCCGAATTAGGGGGATGGAGTGTGGAGAATAAGGACACTTCATCTTGGATGCTCACCTGCC
AAATTGACTTCTGATGAAAGCCAGCTCCAGAAATGTGCCTACAGTTACTACTTTCACCTAAACCCTGCCCTTAGTCAAATCCTTCTCTTCTTCTAAGCAATCAACTTCAATTCCTTGTATAACCCACA
GTATAAAAGGGCTTTTATACCATTCTATCCTATTGCATGTAAGCCTTGGGTCTGGGAGGTAACAGTGTGGGATTCCACCATCTCATCTCCCTGCCACCCAAACATGCCTGCTCTTCTTTAAGCAATAT
TAAATGTTTGTACTTCAGAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_136334

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	41,454,169 - 41,500,649 (-)	NCBI
CHM1_1	19	41,959,704 - 42,006,184 (-)	NCBI
T2T-CHM13v2.0	19	44,275,440 - 44,321,937 (-)	NCBI

Sequence:

show sequence

AAAGTGTTATTTGACTGGAGTGAGGTCTCATGTCTGCTTATGCGGTGGCTCGCTGCTCAGAACA
GGGAGGAAGAGGGTAATCTGGAAGAGTTTCCTGACCTACTCTGCTGCTGTGATTAAACAACCACCAGGAAATTTTGATGACACTGTTCTCCTGAGCTCCTCCCTTTCCTCGGGGAAGAAAAGCATTGA
AACTACAAAAATAAAGTGTTATTTGGCTGGAGTGAGGTCTCATGTCTGCTTATGCGGTGGCTCGCTGCTCAGAACAGGGAACCATTGGAGATACTCATTACTCTTTGAAGGCTTACAGTGGAATGAAT
TCAAATACGACTTATTTGAGGAATTGAAGTTGACTTTATGGAGCTGATAAGAATCTTCTTGGAGAAAAAAAGACTGGGTATATTTTCAATATGCTTTCCTTTTAAGGTCCCTCACCTGTGGAAAGTAA
AGAATGTCACTTTCTGACAGGCTCAGGAACCTCAAGTTATGTAGGGATCTCAAGAAGATGGGGGAATTCACCCAGTTCATACAGGTGAAATTGCTGTTGCAAAGATTATGAATATGAGAGAAGTCCAG
CATGGCTGACTTCATCTCGTGTCTGGCCTCAGGCTGGCTGCCCTTGCTCACTCTTGGGCATAGGCCAAGCTAGCCATGGGAGGAATTTAGTTTATAGTTTAACTTTGAAGCACGGATGATAATAGTCT
CTCCCTAAAATGAACCCCTTCCTTGCTCAGGGACTGAAACTACCTTTGTATGACAAATGAAAGCCCACAAGATTAAGATTATGAGAGGGGCCTGAATTCTGCTAAAATGCAGGTGTAGCTGACTGATA
ACAAGTCATTGTCCCACAGCTTGCCTTTCTATAATCTCTTGCTTCTCAGGAGTCACATGGCCAGAGGTCCTGAGATTTCCAGTCCTGTGACCCCCACCCAGAGATGGACTTAGTGCATGAGGACCATT
TTCCACACCCCTATGATTTCATCCTCAAACAATCAGCAGCAACCATTCCCTAGCCCCCTGCCTTCCAAATTATCCATAAAAATCCTAGCCTCTGAGTTATTAGGGAGATTGATTAATAATCCCAGTCC
TACCCCTTGGGTTGCTCTGATTTAATTAAACCTTCTCTACTGCAATACCACGGACTCAGTAAATTGGTTTTGTCTGTGCAATGGGCAAGAAGAACATGTTGCATGGTTATACAGGTACTACAAGCACA
GTCTGATGGCAAATTATTGGTTTTGCTTCCTGCCCTTGATGTTTCTAAACATCTAGTCCAAAATTACTTGTGAAAGGTCCAGCAAAGCCAATTTTAAAAGAGGCTATATGGCCAATCACTATTCTTTC
TACACATTATTGCAAATAATCAGGCCACGGCTGGGCACGGTGGCTCATGCCTGCAATCCCAGCACTTTGGGAGGCTGAGGCAGGATCACCTGAAATCAGGAGTTCAAGACCAGCCTAGGCAACATGAT
AAAACCCTGTCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGCATGCACCTGTAATCCCAGCTACTTGGGAGACTGAGGGAGGAGAATCACTTGAACCTGGGAGGCAGAGATTGCAGTGAGCTG
AGATCACACCACTGCACTCCAGCCTGGGCAATAGAGTGAGACTTTGTCTCAAATAATAATAATAATAATCAGACCAAGTATAATGAAATTAAAATTTATTTTGCAAATAAATTGGTCCTACTACAATT
TATCCTTCATAGAAATGTGGAAACTGAAGATAAAAAAAATTAGGTTTCAGAAGAAAACTATACTACACCTGTTATTAGATTCTAGCCCTAAACATTGTTTTTGAGGTTTTTATTATTTACCTGCAATT
TGGTCTAAATTCTGAATTATTTCCTGACTACAAGTATCCAAGGAATAAATGGGTTTTCTTTTTCTTTATGATAGTTTTAGTTGGCTTCTAATGCAACAACAATTTTTATTGTAATCCTGTGTGCATTC
TATTCCTACTATTCAAATTATTAATGTTATAGATCTTTCATTGTAGTACTTCTGAATTAACCAAAATCACAGTATTCTGAAGATGATTCTACAAAGCCTGCTGTTTCTACAAAGGCTGCTGATGATTT
CTACAAAGCCTGCTGTAGTGTTGCTGTGGCCTCTGCTTAAAAAAGTAGAAAACACATTGATGCAGCATGTTCACCCCAACCTCCCTGCCTAAAGGCTCAGGGACCATCTTGGAAGAGGAAGGCGCGTG
AGATTGTAAGAGCCGAATTAGGGGGATGGAGTGTGGAGAATAAGGACACTTCATCTTGGATGCTCACCTGCCAAATTGACTTCTGATGAAAGCCAGCTCCAGAAATGTGCCTACAGTTACTACTTTCA
CCTAAACCCTGCCCTTAGTCAAATCCTTCTCTTCTTCTAAGCAATCAACTTCAATTCCTTGTATAACCCACAGTATAAAAGGGCTTTTATACCATTCTATCCTATTGCATGTAAGCCTTGGGTCTGGG
AGGTAACAGTGTGGGATTCCACCATCTCATCTCCCTGCCACCCAAACATGCCTGCTCTTCTTTAAGCAATATTAAATGTTTGTACTTCAGAAAAAAAAAAAAAAA

hide sequence

RGD ID:

15097235

Promoter ID:

EPDNEWNC_H2057

Type:

initiation region

Name:

PCAT19_2

Description:

prostate cancer associated transcript 19 [Source:HGNCSymbol;Acc:HGNC:49593]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	41,479,143 - 41,479,203	EPDNEWNC

RGD ID:

15097234

Promoter ID:

EPDNEWNC_H2058

Type:

initiation region

Name:

PCAT19_1

Description:

prostate cancer associated transcript 19 [Source:HGNCSymbol;Acc:HGNC:49593]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	41,500,644 - 41,500,704	EPDNEWNC

Database	Acc Id	Source(s)
COSMIC	PCAT19	COSMIC
Ensembl Genes	ENSG00000267107	Ensembl, ENTREZGENE
Ensembl Transcript	ENST00000588495	ENTREZGENE
	ENST00000652144	ENTREZGENE
GTEx	ENSG00000267107	GTEx
HGNC ID	HGNC:49593	ENTREZGENE
Human Proteome Map	PCAT19	Human Proteome Map
NCBI Gene	PCAT19	ENTREZGENE
OMIM	618192	OMIM
RNAcentral	URS00001209F3	RNACentral
	URS0000A76AFD	RNACentral
	URS0000A776B1	RNACentral
	URS0000D57959	RNACentral
	URS0000E6342D	RNACentral
	URS0000E64D70	RNACentral
	URS0000E67A55	RNACentral
	URS0000E68733	RNACentral
	URS0000E6E269	RNACentral
	URS0000E6F498	RNACentral
	URS0000E6FA62	RNACentral
	URS0000E739E2	RNACentral
	URS0000E74A76	RNACentral
	URS0000E75E22	RNACentral
	URS0000E77970	RNACentral
	URS0000E7AEB8	RNACentral
	URS0000E7C2EE	RNACentral
	URS0000E7C377	RNACentral
	URS0000E809D8	RNACentral
	URS0000E82BD3	RNACentral
	URS0000E86656	RNACentral
	URS0000E87B25	RNACentral
	URS0000E88ABC	RNACentral
	URS0000E8D7FD	RNACentral
	URS0000E8DCE9	RNACentral
	URS0000EEC94D	RNACentral
	URS0000EEE773	RNACentral
	URS0000EF1233	RNACentral
	URS0000EF2AD3	RNACentral
	URS0000EF2D68	RNACentral
	URS0000EF2E7D	RNACentral
	URS0000EF5135	RNACentral
	URS0000EF5D76	RNACentral
	URS0000EF60D6	RNACentral
	URS0000EF7246	RNACentral
	URS00022AEA2A	RNACentral
	URS00022B3C93	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-05-22	PCAT19	prostate cancer associated transcript 19		prostate cancer associated transcript 19 (non-protein coding)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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