GWAS1467811_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1467811_H (prostate carcinoma QTL GWAS1467811 (human)) Homo sapiens

Symbol: GWAS1467811_H
Name: prostate carcinoma QTL GWAS1467811 (human)
RGD ID: 597371737
Trait: prostate carcinoma
LOD Score: Not Available
P Value: 2.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381941,479,679 - 41,479,680RGD_MAPPER_PIPELINEGRCh38
GRCh371941,985,587 - 41,985,588RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1467811_HHumanprostate carcinoma  IAGPrs11672691405850206 GWAS_CATALOGPMID:23065704

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1467811_HHumanProstate cancer  IAGPrs11672691405850206 GWAS_CATALOGPMID:23065704
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1467811_HHumanprostate carcinoma  IAGPrs11672691405850206 GWAS_CATALOGPMID:23065704

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
7943681PCAT19prostate cancer associated transcript 19194145416941500649Human


Peak: (rs11672691)
Human AssemblyChrPosition (strand)Source
GRCh381941,479,679 - 41,479,680RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597410635GWAS1506709_Hprostate carcinoma QTL GWAS1506709 (human)2e-23prostate carcinoma194147967941479680Human
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
597371737GWAS1467811_Hprostate carcinoma QTL GWAS1467811 (human)2e-12prostate carcinoma194147967941479680Human
597371736GWAS1467810_Hprostate carcinoma QTL GWAS1467810 (human)1e-08prostate carcinoma194147967941479680Human
597423853GWAS1519927_Htestosterone measurement QTL GWAS1519927 (human)4e-11testosterone measurementserum testosterone level (CMO:0000568)194147967941479680Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1467811_H GCST001714 Prostate cancer 5,132 European ancestry non-aggressive cases, 5,953 European ancestry aggressive cases, 11,463 European ancestry controls G NR 2E-12 11.699 rs11672691 1.08 prostate carcinoma (EFO:0001663)
 PMID:23065704
GWAS1467810_H GCST001714 Prostate cancer 5,132 European ancestry non-aggressive cases, 5,953 European ancestry aggressive cases, 11,463 European ancestry controls G NR 1E-8 8 rs11672691 1.11 prostate carcinoma (EFO:0001663)
 PMID:23065704
GWAS1506709_H GCST006085 Prostate cancer 79,148 European ancestry cases, 61,106 European ancestry controls G 0.74 2E-23 22.699 rs11672691 1.1 prostate carcinoma (EFO:0001663)
 PMID:29892016
GWAS1519927_H GCST90019520 Testosterone levels 310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals G NR 4E-11 10.398 rs11672691 0.019 testosterone measurement (EFO:0004908)
 PMID:33462484
Database
Acc Id
Source(s)
GWAS Catalog GCST001714 GWAS Catalog

Note Type Note Reference