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Gene: LOC102548655 (uncharacterized LOC102548655) Rattus norvegicus

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Symbol:

LOC102548655

Name:

uncharacterized LOC102548655

RGD ID:

7625633

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	93,980,709 - 93,982,135 (+)	NCBI		GRCr8
mRatBN7.2	6	88,244,714 - 88,246,140 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	6	92,095,859 - 92,098,231 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	101,545,377 - 101,547,723 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	6	86,738,737 - 86,741,109 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
4889933	Bss88	Bone structure and strength QTL 88	3.8		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	6	53684921	98684921	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
5684992	Bmd83	Bone mineral density QTL 82	4.8		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	6	53684921	98684921	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	86494122	112380234	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	71278722	116278722	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	64367996	109367996	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
1558641	Cm47	Cardiac mass QTL 47	2.9	0.001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	6	63457441	94939581	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	46050607	116278722	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
4889848	Pur25	Proteinuria QTL 25	14	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	63037319	95934232	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
5684963	Bss99	Bone structure and strength QTL 99	3.1		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	6	53684921	98684921	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	78204640	123204640	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	76937178	121937178	Rat
6893332	Cm74	Cardiac mass QTL 74	0.4	0.64	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	63457441	94939581	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_005506003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_347291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_354877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_005506003

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	93,980,709 - 93,982,135 (+)	NCBI
mRatBN7.2	6	88,244,714 - 88,246,140 (+)	NCBI

RefSeq Acc Id:

XR_354877

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	93,980,879 - 93,982,135 (+)	NCBI
mRatBN7.2	6	88,245,195 - 88,246,140 (+)	NCBI
Rnor_6.0	6	92,095,859 - 92,098,231 (+)	NCBI
Rnor_5.0	6	101,545,377 - 101,547,723 (+)	NCBI

Sequence:

show sequence

GAGGCAGAGGCAGGAGGATCTTTGTGAGTAAAAGGCCAGTTTGGTCTACAGAGTGAGTTCCAGG
ACAGCCAGAGTTCTATAGTGTGGATAGTTAATACAATGTAAGTATTTGGACAATTAGGGTAGGG
GATAATGAAATCTTCATCTATTAAAAGTGGGAGCCTACAGGGGCTGGAGAGGTGTCTCAGAGGT
TAAGGGCAGCCAGGTTCAGTTGTCAGCATTCATATGATAGGATGTAACCATCCATAACTTCACC
CCTAGGAGATGGATACCCTCTTCTGCCTTCTGAGGATACCGGCATGCACAGGGCACACATGAAA
GCAAGATAAACATATACAATAGATTCAGTTTAAGACTAGGAAGCCCACAATATCAGGAAATATC
AGTATACCACTTTTGTCCTTACATTATCTGCTAATAATTTTAGTAGGGGGCTTTCACTAAGGTC
CATGAGAAACACCTGTTTATCGCTTTCTTGACTTGAAATGCCTTTATCTTATTTTTGCATCAGG
AGAGAGTTGACTCAGAAAATGACTTGGGAAATGTTTCTTTTGTGTTTTCACGGAGTTGAATAGG
GCTGTTATTTCCTCCTTGTGCATTCGATAGACTTCACAAATAAAATATTTGAATATTAGAGTGT
AACTTAGCATGGTTATAGGGAAAATGTGTAACAGTTCACATCTTGGTGGCAAAGTAAATCTGTT
TGGTTTGGAAAAATGTACACCCTAGAAGCTTAGCTCAAGAACTTCTAAATTGAAATAGAGAAAA
AAGAAAACTTATTTGTAGGGAAAATTTACAGTAGAATTATTTACCAGGCCAAATGCTGACAACT
TCTTGGATATTCAGTGACGGAGGGATGTCTAGAAATAATGTAACTTATTGTAATGACATATTAA
TAGTAGGTCTAAGGGTTATATTCCTGTGTATAGAAAAGACATATGAGAGTGTACTAGTGAAGTG
CAGAACTCATTCCACAACACAGGGCGTGCTCTGCTTTCTCGACAGGGTGGCTGGCGGATCGGCT
GCTGCGGCCATGGTCTAAGGCCCTCCGGACACCTGGACAGTATCCATGGCACCACAACAAGGTG
AGTGCCAAGCAAATCACCCAGCCCGGAACAGAACATCAGAGGAGCAACTTTCTCATACGTGTAT
AAACTGTGTCTGCTGGCTTAGTGCTAGTCAATTTATAAAGAAAATTAGTTTATAATCTTCATGA
GGAGAAACTAACTGGGGAGGGGTGGGGCAGGCATGACTGCCCTTGTCAGGCTGAGGCACTTGGG
CTGTGTCCACGCCCACTTCTGGAGAGAGCCATGTCAGTAGATAACATGCCTTCAATCGTAAATA
GCAAGTTACTCTATACGGGGTATCTTTGCCCCCACTCCCTTCTCTGTTATCATGGTTAATTGTG
TCAACTTGACTGCATTGAGGGGACCCCAAGAAACTAGTGAAGCATACCCTTGGCTCTGCCTGTG
AGGGCTTTTCCAGTGACAACGAGATCACAAAGCCTGACCTAATGAATGGATGGTTTCATCGATT
GATGGGTTCAAGCTTTGAGTGAACTACTGGAGAAGAAAGTGTCTCCTCTGTGCTTGACCCTGCT
CATCCCCAGTGACCCTGTCCCCTATTCTGGAGGAAATGAGTGCGTCACAGATAAGCCAAGAAGA
ATCTCGACAGACAAGTCTTGCTGAGTTCCCCATGCAGTCAGTTAGCAACCACGGCTTCTCACCG
GAGTCCACGTAAGAACCCAAAAGGACTGCAGCCTCTGGAGAGTTGGCAGAGAGACAGACTTGTG
GGTCTTCCTACAGAGGGTGCGGACTCCACACACCCTTTCTCATACTTTACTGTGACTGTCCTTT
CATCTGTATCCTTTGTAATAAAGCAGCAGATGTGA

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Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-37222	BioCyc
NCBI Gene	LOC102548655	ENTREZGENE
PhenoGen	LOC102548655	PhenoGen
RNAcentral	URS0000CCE3DA	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-18	LOC102548655	uncharacterized LOC102548655			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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