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Gene: LOC102546359 (uncharacterized LOC102546359) Rattus norvegicus

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Symbol:

LOC102546359

Name:

uncharacterized LOC102546359

RGD ID:

7572082

Description:

Type:

ncrna

RefSeq Status:

MODEL

Previously known as:

LOC102553582; uncharacterized LOC102553582

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	224,472,328 - 224,472,738 (-)	NCBI		GRCr8
mRatBN7.2	2	221,797,737 - 221,800,778 (-)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	2	238,525,961 - 238,527,420 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	257,062,562 - 257,063,863 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	2	214,025,180 - 214,026,623 (-)	NCBI		Celera
Cytogenetic Map	2	q43	NCBI

JBrowse:

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Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC102546359
20 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
2301408	Kidm36	Kidney mass QTL 36		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	190613715	226808892	Rat
1598813	Memor9	Memory QTL 9	2.7		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	199341726	234244620	Rat
8693697	Alc36	Alcohol consumption QTL 36	2	0.592	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	2	217139753	236660713	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
1298075	Scl17	Serum cholesterol level QTL 17	3.4		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	211744537	249053267	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
2298479	Eau5	Experimental allergic uveoretinitis QTL 5		0.0021	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	2	202446871	237938339	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	214226044	247136170	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
7207484	Bss108	Bone structure and strength QTL 108	5.3		femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	2	211744537	249053267	Rat
2313073	Bmd75	Bone mineral density QTL 75	4.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	2	215377404	237938339	Rat
738013	Alc15	Alcohol consumption QTL 15	4.1	0.00022	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	2	184165752	229165752	Rat
61398	Bp50	Blood pressure QTL 50	4.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	189599258	234599258	Rat
7207482	Bss107	Bone structure and strength QTL 107	7		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	2	211744537	249053267	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	193452645	245889826	Rat
1549836	Bss2	Bone structure and strength QTL 2	7.5		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	2	211744537	249053267	Rat
2317885	Alcrsp28	Alcohol response QTL 28	2.1	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	212828222	249053267	Rat
1581499	Esta2	Estrogen-induced thymic atrophy QTL 2			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	189599258	226936289	Rat
1331767	Hrtrt12	Heart rate QTL 12	3.373		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	218414747	240841241	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	182171407	227171407	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	182171407	227171407	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	179946951	224946951	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
2293833	Kiddil8	Kidney dilation QTL 8	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	182171407	227171407	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	200990457	245990457	Rat
7207490	Bss111	Bone structure and strength QTL 111	6.4		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	2	211744537	249053267	Rat
8693622	Alc26	Alcohol consumption QTL 26	2.4	0.667	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	2	221136523	241305619	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	182171407	227171407	Rat
61366	Iddm3	Insulin dependent diabetes mellitus QTL 3	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	189599258	234599258	Rat
2293844	Kiddil7	Kidney dilation QTL 7	3.5		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	219753301	247136170	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	179335906	224335906	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
1359019	Hrtrt19	Heart rate QTL 19	2.9		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	219753301	226277316	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_352049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_352049

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	224,472,328 - 224,472,738 (-)	NCBI
mRatBN7.2	2	221,797,737 - 221,800,778 (-)	NCBI
Rnor_6.0	2	238,525,961 - 238,527,420 (-)	NCBI
Rnor_5.0	2	257,062,562 - 257,063,863 (-)	NCBI

Sequence:

show sequence

ACTCAATGTTTACTTTTAAAGGGTCGCCTTGGTCATGATGTCTCTTCACAGCAATGAAACCCAA
ACTAACACAACGAGTATGTGTTTTAATTCTTAATTCTAGGACTTTACAAGATGGGGATAAAGGC
AAATGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTCTTGAACACAT
CTCCAGAATTTACAAATAAAATACAAAACTCATTGGTTTTTGGAGGTTGGGGTGTCTGGTAGGT
AGCCAAGCTTAGCCATCGTTCTGATTACGTATCTAGGGGTAGTGAGATGTCCAGGAGCCAGTCC
AATGTAGAGCCCAGGACTCTTAGTATATTAAGTAGCTTTTAGTCTATCAAAATTTAGTTTACAG
ACACTTCCCAATAAGTAAAATACCAGGTTGCTAACATCAAAGATAACTTCTTAGGTCTTCAGAT
TTTCAATTAAATGACTTTCCTTTTCCTGGAGTATGTGTGGAGCAGATGCTGTCAGTTTTCCAAC
TAAATGTGAGAGAAGGTGGTCCAAGTAAGACGTCATATGTACTCTAGGTTGGAGAGCTGAGTGG
GCAGGGGTACCCACCACCCTAGACAAGGTCCAGACAATTCTAGGATGACGCCAGATCCGGGGCT
GCAGAATTTGGAGTTCGCCTCCTGGGTTTAGGGCCTCATCATAAGAGATCGATTGAGCCTGGAC
AAGCTTTATGCTTATACTCTTGAATACTCCTGGAACTTTAATATGTTGGGTACTTCATGAAATG
TAATAAATACATTTCGTGTCATAAAATTAACATGGGATTATTTTTCCGGGGTAGAGGTGGACTA
TCATGATCTCAAAGTGACGTTTGGACGGTGTGTAGGCGGAACAGACTCTTGAGAATTGACCTGT
CAACTAGGTTTTAGAACACCAAAGAGACACACATCTAATTATCACTATGATATTATTTCCAGAG
ATGCTCAACTAGAGGAGGGGGAGGGGAGAGGGAGGAGTGGGAGTAGGGAGAGGAGGAGAACGAG
AAGAACCTGACCTGAATGTGAATGGCACTATCCCACGGACTAGGGTCTTGGGACAAAGAAGGTG
AGCTGACCGTCAGCGTTCATCTCTGCTTGCTGCCATGACAGCAAGCATGACTCTGTGACTAGAT
GCCTGCAAGCCCTCCCCACCGTGATAGACTGTACCCACATCTCTAAGCCGAAACACCACTGTCC
TCCTTAAGTGGCTTTTCTCAGTTTCACAGCACGGATAAACGTGTCTAATATACTACCGAATTGT
CTGTGCGTTCCGCTCAGGTTTTCTGTGAACAGAAAACTGCTCCCCTTTTTTAGAGGCCCGTTTT
CTAAAAAAAAAAAAAA

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Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-51164	BioCyc
NCBI Gene	LOC102546359	ENTREZGENE
PhenoGen	LOC102546359	PhenoGen
RNAcentral	URS0000CCFA10	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	LOC102546359	uncharacterized LOC102546359	LOC102553582	uncharacterized LOC102553582	Data merged from RGD:7698848	737654	PROVISIONAL
2013-12-18	LOC102546359	uncharacterized LOC102546359			Symbol and Name status set to provisional	70820	PROVISIONAL
2013-12-18	LOC102553582	uncharacterized LOC102553582			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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