CLRN1 (clarin 1) - Rat Genome Database

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Gene: CLRN1 (clarin 1) Homo sapiens
Analyze
Symbol: CLRN1
Name: clarin 1
RGD ID: 737108
HGNC Page HGNC:12605
Description: Involved in several processes, including equilibrioception; photoreceptor cell maintenance; and sensory perception of sound. Acts upstream of or within actin filament organization; cell motility; and positive regulation of lamellipodium assembly. Located in lamellipodium; microvillus; and plasma membrane. Implicated in Usher syndrome type 3A and retinitis pigmentosa 61.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: clarin-1; RP61; USH3; USH3A; usher syndrome type iii a; Usher syndrome type-3 protein
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383150,926,163 - 150,972,999 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3150,926,163 - 150,972,727 (-)EnsemblGRCh38hg38GRCh38
GRCh373150,643,950 - 150,690,786 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363152,126,640 - 152,173,476 (-)NCBINCBI36Build 36hg18NCBI36
Build 343152,128,665 - 152,144,721NCBI
Celera3149,056,900 - 149,103,663 (-)NCBICelera
Cytogenetic Map3q25.1NCBI
HuRef3148,017,226 - 148,064,192 (-)NCBIHuRef
CHM1_13150,607,308 - 150,654,110 (-)NCBICHM1_1
T2T-CHM13v2.03153,677,250 - 153,724,083 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CLRN1Humanretinitis pigmentosa  TAS 8547535 RGD 
CLRN1HumanUsher syndrome  TAS 8547535 RGD 
CLRN1HumanUsher syndrome type 3A  IAGP 634439 RGD 
1 to 20 of 119 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CLRN1Humanbranchiootorenal syndrome  IAGPRGD:1269103748554872ClinVar Annotator: match by term: Melnick-Fraser syndromeClinVarPMID:28492532|PMID:30311386
CLRN1Humanfundus dystrophy  IAGPRGD:269093298554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:11524702|PMID:24498627|PMID:28492532
CLRN1Humanfundus dystrophy  IAGPRGD:384613028554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25741868|PMID:25743179|PMID:28492532
CLRN1Humanfundus dystrophy  IAGPRGD:86110058554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:12080385|PMID:12145752|PMID:14569126|PMID:18281613|PMID:19423712|PMID:19753315|PMID:22787034|PMID:24033266|PMID:26180195|PMID:28041643|PMID:28492532|PMID:31370859
CLRN1Humanfundus dystrophy  IAGPRGD:126758987|RGD:15132623|RGD:1559895728554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:28492532
CLRN1Humanfundus dystrophy  IAGPRGD:110930858554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:20717163|PMID:24033266|PMID:25741868|PMID:27460420|PMID:30311386
CLRN1Humanfundus dystrophy  IAGPRGD:1504815608554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:22135276|PMID:25741868|PMID:31964843
CLRN1Humanfundus dystrophy  IAGPRGD:596939615|RGD:596941537|RGD:596942377|RGD:596944193|RGD:5969457538554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25741868
CLRN1Humanfundus dystrophy  IAGPRGD:135404138554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:22952768|PMID:24033266|PMID:25741868|PMID:28492532
CLRN1Humanfundus dystrophy  IAGPRGD:13519694|RGD:15169100|RGD:1518374598554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25741868|PMID:28492532
CLRN1Humanfundus dystrophy  IAGPRGD:85580728554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:12080385|PMID:12145752|PMID:14569126|PMID:16028794|PMID:18281613|PMID:19423712|PMID:19753315|PMID:22787034|PMID:25741868|PMID:26180195|PMID:28041643|PMID:28492532|PMID:34906470
CLRN1Humanfundus dystrophy  IAGPRGD:86110118554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:24033266|PMID:28492532
CLRN1Humanfundus dystrophy  IAGPRGD:86110098554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:12080385|PMID:12145752|PMID:15521980|PMID:24033266|PMID:25741868|PMID:28492532
CLRN1Humanfundus dystrophy  IAGPRGD:11351257|RGD:26910692|RGD:26911025|RGD:405264286|RGD:405264288|RGD:405264389|RGD:405264391|RGD:405264393|RGD:4052643948554872ClinVar Annotator: match by term: Retinal dystrophyClinVar 
CLRN1Humanfundus dystrophy  IAGPRGD:137853868554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25268133|PMID:27610647|PMID:28471114|PMID:28492532|PMID:31213501|PMID:31960602
CLRN1Humanfundus dystrophy  IAGPRGD:100414548554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:17893653|PMID:22952768|PMID:23304067|PMID:25741868|PMID:26338283|PMID:28492532
CLRN1Humanfundus dystrophy  IAGPRGD:85580768554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:15521980|PMID:19753315|PMID:25741868|PMID:28224992|PMID:28492532|PMID:29545425|PMID:31836858|PMID:31963381|PMID:35481838
CLRN1Humanfundus dystrophy  IAGPRGD:85684418554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:21310491|PMID:28492532
CLRN1Humangenetic disease  IAGPRGD:135196948554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868|PMID:28492532
CLRN1Humangenetic disease  IAGPRGD:155641579|RGD:156229041|RGD:156278173|RGD:156361101|RGD:156361172|RGD:156412301|RGD:26917692|RGD:384843098554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
1 to 20 of 119 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CLRN1Humanretinitis pigmentosa  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CLRN1HumanUsher syndrome type 3  ISSRGD:73410513592920 MouseDO 
CLRN1HumanUsher syndrome type 3A  ISSRGD:73410513592920OMIM:276902MouseDO 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CLRN1Humanretinitis pigmentosa 61  IAGP 7240710 OMIM 
CLRN1HumanUsher syndrome type 3A  IAGP 7240710 OMIM 

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CLRN1Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:7341056480464Tetrachlorodibenzodioxin affects the expression of CLRN1 mRNACTDPMID:21570461
CLRN1Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:6287796480464Tetrachlorodibenzodioxin results in increased expression of CLRN1 mRNACTDPMID:32109520
CLRN1Human6-propyl-2-thiouracil affects expressionISORGD:6287796480464Propylthiouracil affects the expression of CLRN1 mRNACTDPMID:24780913
CLRN1Humanammonium chloride affects expressionISORGD:6287796480464Ammonium Chloride affects the expression of CLRN1 mRNACTDPMID:16483693
CLRN1Humanbelinostat increases expressionEXP 6480464belinostat results in increased expression of CLRN1 mRNACTDPMID:27188386
CLRN1Humanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of CLRN1 exon; Benzo(a)pyrene affects the methylation of CLRN1 promoterCTDPMID:27901495
CLRN1Humanbisphenol A decreases expressionISORGD:6287796480464bisphenol A results in decreased expression of CLRN1 mRNACTDPMID:25181051|PMID:30816183|PMID:32528016|PMID:34947998
CLRN1Humanbisphenol A affects methylationEXP 6480464bisphenol A affects the methylation of CLRN1 geneCTDPMID:31601247
CLRN1HumanCGP 52608 multiple interactionsEXP 6480464CGP 52608 promotes the reaction [RORA protein binds to CLRN1 gene]CTDPMID:28238834
CLRN1Humanflavonoids increases expressionISORGD:6287796480464Flavonoids results in increased expression of CLRN1 mRNACTDPMID:18035473
CLRN1Humanlinsidomine increases oxidationISORGD:6287796480464linsidomine results in increased oxidation of CLRN1 proteinCTDPMID:28086193
CLRN1Humanresveratrol multiple interactionsEXP 6480464[Plant Extracts co-treated with Resveratrol] results in decreased expression of CLRN1 mRNACTDPMID:23557933
CLRN1Humanvorinostat increases expressionEXP 6480464vorinostat results in increased expression of CLRN1 mRNACTDPMID:27188386

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Biological Process
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CLRN1Humanactin filament organization acts_upstream_of_or_withinIDA 150520179 PMID:19423712MGIPMID:19423712
CLRN1Humanauditory receptor cell development acts_upstream_of_or_withinIEAUniProtKB:Q8K445|ensembl:ENSMUSP00000051738150520179 EnsemblGO_REF:0000107
CLRN1Humanauditory receptor cell stereocilium organization acts_upstream_of_or_withinIEAUniProtKB:Q8K445|ensembl:ENSMUSP00000051738150520179 EnsemblGO_REF:0000107
CLRN1Humancell motility acts_upstream_of_or_withinIDA 150520179 PMID:19423712MGIPMID:19423712
CLRN1Humanequilibrioception involved_inIMP 150520179 PMID:15521980HGNC-UCLPMID:15521980
CLRN1Humanequilibrioception involved_inIBAPANTHER:PTN002834949|UniProtKB:P58418|ZFIN:ZDB-GENE-040718-420150520179 GO_CentralGO_REF:0000033
CLRN1Humanneuromuscular process controlling balance acts_upstream_of_or_withinIEAUniProtKB:Q8K445|ensembl:ENSMUSP00000051738150520179 EnsemblGO_REF:0000107
CLRN1Humanphotoreceptor cell maintenance involved_inIMP 150520179 PMID:15521980HGNC-UCLPMID:15521980
CLRN1Humanpositive regulation of lamellipodium assembly acts_upstream_of_or_withinIDA 150520179 PMID:19423712MGIPMID:19423712
CLRN1Humansensory perception of light stimulus involved_inIMP 150520179 PMID:15521980HGNC-UCLPMID:15521980
CLRN1Humansensory perception of sound involved_inIEAUniProtKB-KW:KW-1009150520179 UniProtGO_REF:0000043
CLRN1Humansensory perception of sound acts_upstream_of_or_withinIEAUniProtKB:Q8K445|ensembl:ENSMUSP00000051738150520179 EnsemblGO_REF:0000107
CLRN1Humansensory perception of sound involved_inIBAMGI:2388124|PANTHER:PTN002834949|UniProtKB:P58418|ZFIN:ZDB-GENE-040718-420150520179 GO_CentralGO_REF:0000033
CLRN1Humansensory perception of sound involved_inIMP 150520179 PMID:15650299HGNC-UCLPMID:15650299
CLRN1Humansensory perception of sound involved_inIEAARBA:ARBA00033578150520179 UniProtGO_REF:0000117
CLRN1Humanvisual perception involved_inIEAUniProtKB-KW:KW-0844150520179 UniProtGO_REF:0000043
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Cellular Component
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CLRN1Humanbasal part of cell located_inIEAUniProtKB:Q8K445|ensembl:ENSMUSP00000051738150520179 EnsemblGO_REF:0000107
CLRN1Humanlamellipodium located_inIDA 150520179 PMID:19423712MGIPMID:19423712
CLRN1Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
CLRN1Humanmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
CLRN1Humanmicrotubule cytoskeleton located_inIEAUniProtKB:Q8K445|ensembl:ENSMUSP00000051738150520179 EnsemblGO_REF:0000107
CLRN1Humanmicrovillus located_inIDA 150520179 PMID:19423712MGIPMID:19423712
CLRN1Humanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
CLRN1Humanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
CLRN1Humanplasma membrane located_inIDA 150520179 PMID:19423712MGIPMID:19423712
CLRN1Humanstereocilium located_inIEAUniProtKB:Q8K445|ensembl:ENSMUSP00000051738150520179 EnsemblGO_REF:0000107
CLRN1Humantrans-Golgi network transport vesicle located_inIEAUniProtKB:Q8K445|ensembl:ENSMUSP00000051738150520179 EnsemblGO_REF:0000107
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Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
CLRN1Humanprotein binding enablesIPIUniProtKB:O14523|UniProtKB:O14880|UniProtKB:O75396|UniProtKB:P11215|UniProtKB:P56557|UniProtKB:Q4LDR2|UniProtKB:Q53HI1|UniProtKB:Q6N075|UniProtKB:Q6PL45-2|UniProtKB:Q6ZT21|UniProtKB:Q8IXM6|UniProtKB:Q8N130|UniProtKB:Q8N5W8|UniProtKB:Q8N661|UniProtKB:Q8N682|UniProtKB:Q8N6F1-2|UniProtKB:Q8NHW4|UniProtKB:Q8WVQ1|UniProtKB:Q8WW34-2|UniProtKB:Q96MV8|UniProtKB:Q9BVK2|UniProtKB:Q9BVK8|UniProtKB:Q9H0R3|UniProtKB:Q9NRS4|UniProtKB:Q9NV12|UniProtKB:Q9Y231150520179 PMID:32296183IntActPMID:32296183

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CLRN1Humanretinitis pigmentosa pathway   TAS 8547535 RGD 
1 to 20 of 56 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CLRN1HumanAbnormal central response of multifocal electroretinogram  IAGP 8699517 HPOORPHA:791
CLRN1HumanAbnormal cochlea morphology  IAGP 8699517 HPOORPHA:231183
CLRN1HumanAbnormal electroretinogram  IAGP 8699517 HPOORPHA:231183|ORPHA:791
CLRN1HumanAbnormal full-field electroretinogram  IAGP 8699517 HPOORPHA:791
CLRN1HumanAbnormal retinal vascular morphology  IAGP 8699517 HPOORPHA:791
CLRN1HumanAbnormal vestibular function  IAGP 8699517 HPOMIM:276902|PMID:11524702
CLRN1HumanAbnormality of fundus pigmentation  IAGP 8699517 HPOMIM:268000
CLRN1HumanAbnormality of retinal pigmentation  IAGP 8699517 HPOORPHA:791
CLRN1HumanAnxiety  IAGP 8699517 HPOORPHA:231183
CLRN1HumanAstigmatism  IAGP 8699517 HPOORPHA:231183
CLRN1HumanAtaxia  IAGP 8699517 HPOORPHA:231183
CLRN1HumanAttenuation of retinal blood vessels  IAGP 8699517 HPOMIM:614180|PMID:21310491|ORPHA:791
CLRN1HumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:268000
CLRN1HumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:268000|MIM:276902|PMID:11524702|MIM:614180|PMID:21310491
CLRN1HumanBlindness  IAGP 8699517 HPOORPHA:791
CLRN1HumanBone spicule pigmentation of the retina  IAGP 8699517 HPOMIM:614180|PMID:21310491|ORPHA:791
CLRN1HumanCataract  IAGP 8699517 HPOORPHA:231183
CLRN1HumanChildhood onset  IAGP 8699517 HPOMIM:276902|PMID:11524702
CLRN1HumanColor vision defect  IAGP 8699517 HPOORPHA:791
CLRN1HumanConductive hearing impairment  IAGP 8699517 HPOORPHA:791
1 to 20 of 56 rows
1 to 20 of 46 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CLRN1HumanHearing impairment  IAGPRGD:137847068554872ClinVar Annotator: match by term: HypoacusisClinVarPMID:30311386
CLRN1HumanHearing impairment  IAGPRGD:85580698554872ClinVar Annotator: match by term: Hearing impairmentClinVarPMID:11524702|PMID:12145752|PMID:19753315|PMID:22681893|PMID:25741868|PMID:28492532|PMID:30311386
CLRN1HumanHearing impairment  IAGPRGD:110930858554872ClinVar Annotator: match by term: HypoacusisClinVarPMID:20717163|PMID:24033266|PMID:25741868|PMID:27460420|PMID:30311386
CLRN1HumanOptic atrophy  IAGPRGD:110930858554872ClinVar Annotator: match by term: Optic atrophyClinVarPMID:20717163|PMID:24033266|PMID:25741868|PMID:27460420|PMID:30311386
CLRN1HumanRetinal dystrophy  IAGPRGD:269093298554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:11524702|PMID:24498627|PMID:28492532
CLRN1HumanRetinal dystrophy  IAGPRGD:384613028554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25741868|PMID:25743179|PMID:28492532
CLRN1HumanRetinal dystrophy  IAGPRGD:5969441938554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25741868
CLRN1HumanRetinal dystrophy  IAGPRGD:5969457538554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25741868
CLRN1HumanRetinal dystrophy  IAGPRGD:1504815608554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:22135276|PMID:25741868|PMID:31964843
CLRN1HumanRetinal dystrophy  IAGPRGD:135196948554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25741868|PMID:28492532
CLRN1HumanRetinal dystrophy  IAGPRGD:135404138554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:22952768|PMID:24033266|PMID:25741868|PMID:28492532
CLRN1HumanRetinal dystrophy  IAGPRGD:5969423778554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25741868
CLRN1HumanRetinal dystrophy  IAGPRGD:151691008554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25741868|PMID:28492532
CLRN1HumanRetinal dystrophy  IAGPRGD:1518374598554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25741868|PMID:28492532
CLRN1HumanRetinal dystrophy  IAGPRGD:5969396158554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25741868
CLRN1HumanRetinal dystrophy  IAGPRGD:5969415378554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25741868
CLRN1HumanRetinal dystrophy  IAGPRGD:110930858554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:20717163|PMID:24033266|PMID:25741868|PMID:27460420|PMID:30311386
CLRN1HumanRetinal dystrophy  IAGPRGD:85580728554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:12080385|PMID:12145752|PMID:14569126|PMID:16028794|PMID:18281613|PMID:19423712|PMID:19753315|PMID:22787034|PMID:25741868|PMID:26180195|PMID:28041643|PMID:28492532|PMID:34906470
CLRN1HumanRetinal dystrophy  IAGPRGD:100414548554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:17893653|PMID:22952768|PMID:23304067|PMID:25741868|PMID:26338283|PMID:28492532
CLRN1HumanRetinal dystrophy  IAGPRGD:85580768554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:15521980|PMID:19753315|PMID:25741868|PMID:28224992|PMID:28492532|PMID:29545425|PMID:31836858|PMID:31963381|PMID:35481838
1 to 20 of 46 rows

#
Reference Title
Reference Citation
1. Genes and mutations causing retinitis pigmentosa. Daiger SP, etal., Clin Genet. 2013 Aug;84(2):132-41. doi: 10.1111/cge.12203. Epub 2013 Jun 19.
2. Usher syndrome type III: revised genomic structure of the USH3 gene and identification of novel mutations. Fields RR, etal., Am J Hum Genet 2002 Sep;71(3):607-17.
3. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
PMID:7711740   PMID:8889548   PMID:8975700   PMID:10364543   PMID:10704288   PMID:11524702   PMID:12080385   PMID:12477932   PMID:14569126   PMID:15489334   PMID:15521980   PMID:15650299  
PMID:18281613   PMID:18484607   PMID:19423712   PMID:19683999   PMID:19753315   PMID:20301590   PMID:20717163   PMID:21310491   PMID:21675857   PMID:21873635   PMID:22681893   PMID:22787034  
PMID:22964989   PMID:23304067   PMID:24618850   PMID:25743179   PMID:28469144   PMID:29490346   PMID:31097578   PMID:31968401   PMID:32296183   PMID:35481838  



CLRN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383150,926,163 - 150,972,999 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3150,926,163 - 150,972,727 (-)EnsemblGRCh38hg38GRCh38
GRCh373150,643,950 - 150,690,786 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363152,126,640 - 152,173,476 (-)NCBINCBI36Build 36hg18NCBI36
Build 343152,128,665 - 152,144,721NCBI
Celera3149,056,900 - 149,103,663 (-)NCBICelera
Cytogenetic Map3q25.1NCBI
HuRef3148,017,226 - 148,064,192 (-)NCBIHuRef
CHM1_13150,607,308 - 150,654,110 (-)NCBICHM1_1
T2T-CHM13v2.03153,677,250 - 153,724,083 (-)NCBIT2T-CHM13v2.0
Clrn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39358,751,449 - 58,792,633 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl358,751,449 - 58,792,761 (-)EnsemblGRCm39 Ensembl
GRCm38358,844,028 - 58,885,212 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl358,844,028 - 58,885,340 (-)EnsemblGRCm38mm10GRCm38
MGSCv37358,649,137 - 58,689,134 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36358,933,144 - 58,973,141 (-)NCBIMGSCv36mm8
Celera358,539,156 - 58,572,424 (-)NCBICelera
Cytogenetic Map3DNCBI
cM Map328.78NCBI
Clrn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82145,233,941 - 145,280,855 (-)NCBIGRCr8
mRatBN7.22143,084,030 - 143,130,948 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2143,084,030 - 143,130,948 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2149,725,276 - 149,779,104 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02147,836,830 - 147,890,665 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02142,469,264 - 142,523,099 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02149,049,925 - 149,088,787 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2149,049,925 - 149,088,787 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02168,473,047 - 168,511,371 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42148,193,633 - 148,243,575 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12148,143,595 - 148,163,994 (-)NCBI
Celera2137,511,773 - 137,558,813 (-)NCBICelera
Cytogenetic Map2q26NCBI
Clrn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554482,062,647 - 2,106,548 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554482,062,647 - 2,106,548 (-)NCBIChiLan1.0ChiLan1.0
CLRN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22148,825,320 - 148,872,235 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13148,830,050 - 148,876,804 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03147,954,124 - 148,000,895 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13155,527,076 - 155,573,160 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3155,526,011 - 155,573,684 (-)Ensemblpanpan1.1panPan2
CLRN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12345,512,639 - 45,551,010 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2345,513,416 - 45,551,178 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2345,378,744 - 45,417,307 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02346,140,625 - 46,179,248 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2346,140,631 - 46,179,340 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12345,729,976 - 45,768,565 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02345,782,536 - 45,821,056 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02346,058,630 - 46,097,478 (-)NCBIUU_Cfam_GSD_1.0
Clrn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560290,481,850 - 90,516,983 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367581,250,769 - 1,285,376 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367581,250,831 - 1,286,016 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLRN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1391,106,207 - 91,148,031 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11391,104,850 - 91,152,397 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21399,231,666 - 99,272,739 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLRN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11539,713,439 - 39,761,647 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1539,717,716 - 39,761,306 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604112,534,153 - 12,579,223 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clrn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473028,373,120 - 28,412,282 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473028,373,111 - 28,412,282 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in CLRN1
395 total Variants

1 to 10 of 450 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_174878.3(CLRN1):c.461T>G (p.Leu154Trp) single nucleotide variant Retinitis pigmentosa 61 [RCV000023537]|Usher syndrome type 3A [RCV002513194] Chr3:150928174 [GRCh38]
Chr3:150645961 [GRCh37]
Chr3:3q25.1
pathogenic|likely pathogenic
NM_174878.3(CLRN1):c.92C>T (p.Pro31Leu) single nucleotide variant Retinal dystrophy [RCV001073290]|Retinitis pigmentosa 61 [RCV000023538]|not provided [RCV001384938] Chr3:150972617 [GRCh38]
Chr3:150690404 [GRCh37]
Chr3:3q25.1
pathogenic
NM_052995.2(CLRN1):c.300T>G (p.Tyr100Ter) single nucleotide variant Hearing impairment [RCV001375084]|Retinitis pigmentosa 61 [RCV003466811]|Retinitis pigmentosa [RCV002247246]|Retinitis pigmentosa [RCV002496258]|Usher syndrome type 3 [RCV000004642]|not provided [RCV000724158] Chr3:150928107 [GRCh38]
Chr3:150645894 [GRCh37]
Chr3:3q25.1
pathogenic|likely pathogenic
NM_174878.3(CLRN1):c.359T>A (p.Met120Lys) single nucleotide variant Usher syndrome type 3 [RCV000004643]|not provided [RCV001851649] Chr3:150941656 [GRCh38]
Chr3:150659443 [GRCh37]
Chr3:3q25.1
pathogenic|likely pathogenic
NM_174878.3(CLRN1):c.459_461del (p.Ile153_Leu154delinsMet) deletion Retinitis pigmentosa 61 [RCV004566682]|Usher syndrome type 3 [RCV000004644] Chr3:150928174..150928176 [GRCh38]
Chr3:150645961..150645963 [GRCh37]
Chr3:3q25.1
pathogenic|likely pathogenic
NM_174878.3(CLRN1):c.144T>G (p.Asn48Lys) single nucleotide variant Retinal dystrophy [RCV001073333]|Retinitis pigmentosa 61 [RCV003466812]|Retinitis pigmentosa 61 [RCV005003335]|Retinitis pigmentosa [RCV000504948]|Retinitis pigmentosa [RCV001824560]|Usher syndrome type 3 [RCV000004645]|Usher syndrome type 3A [RCV001273483]|not provided [RCV000489880]|not specified [RCV000999864] Chr3:150972565 [GRCh38]
Chr3:150690352 [GRCh37]
Chr3:3q25.1
pathogenic|likely pathogenic|uncertain significance|not provided
NM_174878.3(CLRN1):c.449T>C (p.Leu150Pro) single nucleotide variant Retinitis pigmentosa 61 [RCV003466813]|Usher syndrome type 3 [RCV000004646] Chr3:150928186 [GRCh38]
Chr3:150645973 [GRCh37]
Chr3:3q25.1
pathogenic|likely pathogenic
NM_174878.3(CLRN1):c.189C>A (p.Tyr63Ter) single nucleotide variant CLRN1-related disorder [RCV003407275]|Rare genetic deafness [RCV000844690]|Retinitis pigmentosa 61 [RCV003466814]|Retinitis pigmentosa 61 [RCV005031388]|Retinitis pigmentosa [RCV000505037]|Usher syndrome type 3 [RCV000004647]|Usher syndrome type 3A [RCV001376502]|not provided [RCV001384937] Chr3:150972520 [GRCh38]
Chr3:150690307 [GRCh37]
Chr3:3q25.1
pathogenic
NM_174878.3(CLRN1):c.188_210del (p.Tyr63fs) deletion Usher syndrome type 3 [RCV000004648] Chr3:150972499..150972521 [GRCh38]
Chr3:150690286..150690308 [GRCh37]
Chr3:3q25.1
pathogenic
NM_174878.3(CLRN1):c.118T>G (p.Cys40Gly) single nucleotide variant CLRN1-related disorder [RCV004754242]|Retinal dystrophy [RCV001075346]|Retinitis pigmentosa 61 [RCV003466815]|Retinitis pigmentosa 61 [RCV005031389]|Usher syndrome [RCV002468960]|Usher syndrome type 3 [RCV000004649]|Usher syndrome type 3A [RCV001273484]|not provided [RCV000414238] Chr3:150972591 [GRCh38]
Chr3:150690378 [GRCh37]
Chr3:3q25.1
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity|uncertain significance|no classifications from unflagged records
1 to 10 of 450 rows

Predicted Target Of
Summary Value
Count of predictions:1039
Count of miRNA genes:640
Interacting mature miRNAs:719
Transcripts:ENST00000295911, ENST00000327047, ENST00000328863, ENST00000468836, ENST00000472224, ENST00000485607
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300026BP36_HBlood pressure QTL 36 (human)4.04Blood pressurehypertension susceptibility3135720453161720453Human
1298415BP24_HBlood pressure QTL 24 (human)2.9Blood pressurehypertension susceptibility3135720453161720453Human
597469011GWAS1565085_Hnon-alcoholic fatty liver disease severity measurement QTL GWAS1565085 (human)0.000003liver integrity trait (VT:0010547)liver disease severity measurement (CMO:0002155)3150940053150940054Human

PMC328092P3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373150,660,296 - 150,660,502UniSTSGRCh37
Build 363152,142,986 - 152,143,192RGDNCBI36
Celera3149,073,254 - 149,073,460RGD
Cytogenetic Map3q25UniSTS
HuRef3148,033,586 - 148,033,792UniSTS
PMC328092P4  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373150,659,313 - 150,659,664UniSTSGRCh37
Build 363152,142,003 - 152,142,354RGDNCBI36
Celera3149,072,271 - 149,072,622RGD
Cytogenetic Map3q25UniSTS
HuRef3148,032,603 - 148,032,954UniSTS
PMC328092P5  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373150,645,809 - 150,646,099UniSTSGRCh37
Build 363152,128,499 - 152,128,789RGDNCBI36
Celera3149,058,759 - 149,059,049RGD
Cytogenetic Map3q25UniSTS
HuRef3148,019,085 - 148,019,375UniSTS
PMC328092P6  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373150,644,354 - 150,644,692UniSTSGRCh37
Build 363152,127,044 - 152,127,382RGDNCBI36
Celera3149,057,304 - 149,057,642RGD
Cytogenetic Map3q25UniSTS
HuRef3148,017,630 - 148,017,968UniSTS
PMC328092P7  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373150,659,327 - 150,659,524UniSTSGRCh37
Build 363152,142,017 - 152,142,214RGDNCBI36
Celera3149,072,285 - 149,072,482RGD
Cytogenetic Map3q25UniSTS
HuRef3148,032,617 - 148,032,814UniSTS
USH3A__5035  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373150,644,323 - 150,645,040UniSTSGRCh37
Build 363152,127,013 - 152,127,730RGDNCBI36
Celera3149,057,273 - 149,057,990RGD
HuRef3148,017,599 - 148,018,316UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
178 273 696 261 1533 680 361 1 98 644 72 401 1614 1555 1309 197 1016 228 27 1


1 to 21 of 21 rows
RefSeq Transcripts NG_009168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001195794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001256819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_052995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_174878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_046380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC020636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF388366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF388368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF482697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF495717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC074970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC074971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM666773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM626132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM626133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM626134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM626135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM626136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 21 of 21 rows

Ensembl Acc Id: ENST00000295911   ⟹   ENSP00000295911
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3150,926,163 - 150,944,236 (-)Ensembl
Ensembl Acc Id: ENST00000327047   ⟹   ENSP00000322280
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3150,926,567 - 150,972,727 (-)Ensembl
Ensembl Acc Id: ENST00000328863   ⟹   ENSP00000329158
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3150,927,936 - 150,972,708 (-)Ensembl
Ensembl Acc Id: ENST00000468836   ⟹   ENSP00000419892
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3150,928,061 - 150,972,684 (-)Ensembl
Ensembl Acc Id: ENST00000472224
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3150,941,415 - 150,972,714 (-)Ensembl
Ensembl Acc Id: ENST00000485607
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3150,928,181 - 150,944,236 (-)Ensembl
Ensembl Acc Id: ENST00000644099   ⟹   ENSP00000494762
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3150,940,481 - 150,972,549 (-)Ensembl
Ensembl Acc Id: ENST00000645441   ⟹   ENSP00000496637
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3150,942,590 - 150,972,550 (-)Ensembl
RefSeq Acc Id: NM_001195794   ⟹   NP_001182723
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383150,926,567 - 150,972,999 (-)NCBI
GRCh373150,643,950 - 150,690,786 (-)ENTREZGENE
HuRef3148,017,226 - 148,064,192 (-)ENTREZGENE
CHM1_13150,607,712 - 150,654,110 (-)NCBI
T2T-CHM13v2.03153,677,654 - 153,724,083 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001256819   ⟹   NP_001243748
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383150,926,567 - 150,972,727 (-)NCBI
GRCh373150,643,950 - 150,690,786 (-)NCBI
HuRef3148,017,226 - 148,064,192 (-)NCBI
CHM1_13150,607,712 - 150,654,110 (-)NCBI
T2T-CHM13v2.03153,677,654 - 153,723,811 (-)NCBI
Sequence:
RefSeq Acc Id: NM_052995   ⟹   NP_443721
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383150,926,163 - 150,944,236 (-)NCBI
GRCh373150,643,950 - 150,690,786 (-)ENTREZGENE
Build 363152,126,640 - 152,144,713 (-)NCBI Archive
HuRef3148,017,226 - 148,064,192 (-)ENTREZGENE
CHM1_13150,607,308 - 150,625,381 (-)NCBI
T2T-CHM13v2.03153,677,250 - 153,695,335 (-)NCBI
Sequence:
RefSeq Acc Id: NM_174878   ⟹   NP_777367
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383150,926,567 - 150,972,727 (-)NCBI
GRCh373150,643,950 - 150,690,786 (-)ENTREZGENE
Build 363152,127,044 - 152,173,476 (-)NCBI Archive
HuRef3148,017,226 - 148,064,192 (-)ENTREZGENE
CHM1_13150,607,712 - 150,654,110 (-)NCBI
T2T-CHM13v2.03153,677,654 - 153,723,811 (-)NCBI
Sequence:
RefSeq Acc Id: NR_046380
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383150,926,567 - 150,972,727 (-)NCBI
GRCh373150,643,950 - 150,690,786 (-)NCBI
HuRef3148,017,226 - 148,064,192 (-)NCBI
CHM1_13150,607,712 - 150,654,110 (-)NCBI
T2T-CHM13v2.03153,677,654 - 153,723,811 (-)NCBI
Sequence:
1 to 5 of 10 rows
1 to 5 of 10 rows
RefSeq Acc Id: NP_443721   ⟸   NM_052995
- Peptide Label: isoform c
- UniProtKB: P58418 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_777367   ⟸   NM_174878
- Peptide Label: isoform a
- UniProtKB: E1ACU9 (UniProtKB/Swiss-Prot),   D3DNJ3 (UniProtKB/Swiss-Prot),   Q8N6A9 (UniProtKB/Swiss-Prot),   P58418 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001182723   ⟸   NM_001195794
- Peptide Label: isoform d
- UniProtKB: P58418 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001243748   ⟸   NM_001256819
- Peptide Label: isoform e
- UniProtKB: C9JYI2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000295911   ⟸   ENST00000295911

Name Modeler Protein Id AA Range Protein Structure
AF-P58418-F1-model_v2 AlphaFold P58418 1-232 view protein structure

RGD ID:6866000
Promoter ID:EPDNEW_H6165
Type:initiation region
Name:CLRN1_1
Description:clarin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6166  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383150,972,727 - 150,972,787EPDNEW
RGD ID:6866002
Promoter ID:EPDNEW_H6166
Type:multiple initiation site
Name:CLRN1_2
Description:clarin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6165  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383150,973,029 - 150,973,089EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
COSMIC CLRN1 COSMIC
Ensembl Genes ENSG00000163646 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000295911 ENTREZGENE
  ENST00000295911.6 UniProtKB/Swiss-Prot
  ENST00000327047 ENTREZGENE
  ENST00000327047.6 UniProtKB/Swiss-Prot
  ENST00000328863 ENTREZGENE
  ENST00000328863.8 UniProtKB/Swiss-Prot
  ENST00000468836 ENTREZGENE
GTEx ENSG00000163646 GTEx
HGNC ID HGNC:12605 ENTREZGENE
Human Proteome Map CLRN1 Human Proteome Map
InterPro Clarin UniProtKB/Swiss-Prot
KEGG Report hsa:7401 UniProtKB/Swiss-Prot
NCBI Gene 7401 ENTREZGENE
OMIM 606397 OMIM
PANTHER CLARIN-1 UniProtKB/Swiss-Prot
  PTHR31548 UniProtKB/Swiss-Prot
PharmGKB PA37231 PharmGKB
UniProt A0A2R8Y8A4_HUMAN UniProtKB/TrEMBL
  C9JYI2 ENTREZGENE, UniProtKB/TrEMBL
  CLRN1_HUMAN UniProtKB/Swiss-Prot
  D3DNJ3 ENTREZGENE
  E1ACU9 ENTREZGENE
  E1ACV0_HUMAN UniProtKB/TrEMBL
  E1ACV1_HUMAN UniProtKB/TrEMBL
  P58418 ENTREZGENE
  Q8N6A9 ENTREZGENE
UniProt Secondary D3DNJ3 UniProtKB/Swiss-Prot
  E1ACU9 UniProtKB/Swiss-Prot
  Q8N6A9 UniProtKB/Swiss-Prot
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