Fabp7 (fatty acid binding protein 7, brain) - Rat Genome Database

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Gene: Fabp7 (fatty acid binding protein 7, brain) Mus musculus
Analyze
Symbol: Fabp7
Name: fatty acid binding protein 7, brain
RGD ID: 736052
MGI Page MGI
Description: Predicted to enable fatty acid binding activity. Acts upstream of or within cell proliferation in forebrain; neurogenesis; and prepulse inhibition. Located in several cellular components, including cell projection; cell-cell junction; and neuronal cell body. Is expressed in several structures, including central nervous system; gut; olfactory system; peripheral nervous system; and retina. Orthologous to human FABP7 (fatty acid binding protein 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B-FA; B-FABP; BFA; BFABP; Bl; Blbp; brain lipid binding protein; brain lipid-binding protein; brain-type fatty acid-binding protein; fatty acid-binding protein 7; fatty acid-binding protein, brain; mammary-derived growth inhibitor-related; MRG
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391057,661,019 - 57,664,546 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1057,660,977 - 57,664,546 (+)EnsemblGRCm39 Ensembl
GRCm381057,784,923 - 57,788,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1057,784,881 - 57,788,450 (+)EnsemblGRCm38mm10GRCm38
MGSCv371057,504,729 - 57,508,256 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361057,473,336 - 57,476,865 (+)NCBIMGSCv36mm8
Celera1058,602,332 - 58,605,859 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1-chloro-2,4-dinitrobenzene  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-hexylcinnamaldehyde  (EXP)
amitrole  (ISO)
ammonium chloride  (ISO)
arsenous acid  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
bromobenzene  (ISO)
bromuconazole  (ISO)
cadmium dichloride  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chenodeoxycholic acid  (ISO)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
clobetasol  (EXP)
clofibrate  (EXP,ISO)
clofibric acid  (ISO)
corn oil  (ISO)
corticosterone  (ISO)
cytarabine  (ISO)
diarsenic trioxide  (EXP,ISO)
diethyl maleate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP)
ethanol  (EXP,ISO)
flutamide  (ISO)
folic acid  (EXP)
fonofos  (ISO)
furan  (ISO)
glycidyl methacrylate  (ISO)
indometacin  (ISO)
isotretinoin  (ISO)
L-methionine  (EXP)
mercury atom  (ISO)
mercury(0)  (ISO)
metformin  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
miconazole  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (ISO)
N-nitrosomorpholine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nitrofen  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP)
parathion  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl caffeate  (ISO)
phenylmercury acetate  (ISO)
phthalaldehyde  (EXP)
pirinixic acid  (ISO)
pyrazinecarboxamide  (ISO)
reserpine  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
streptozocin  (EXP)
tamoxifen  (EXP)
temozolomide  (ISO)
terbufos  (ISO)
tetrachloromethane  (EXP)
tetracycline  (EXP)
thalidomide  (EXP)
thimerosal  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Cloning and characterization of a cDNA encoding a novel fatty acid binding protein from rat brain. Bennett E, etal., J Neurochem 1994 Nov;63(5):1616-24.
2. Reelin signaling directly affects radial glia morphology and biochemical maturation. Hartfuss E, etal., Development 2003 Oct;130(19):4597-609.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme. Liang Y, etal., Proc Natl Acad Sci U S A. 2005 Apr 19;102(16):5814-9. Epub 2005 Apr 12.
5. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1377283   PMID:2137249   PMID:7600988   PMID:7956838   PMID:8161459   PMID:8223263   PMID:8722323   PMID:9856459   PMID:10349636   PMID:10375501   PMID:10839358   PMID:11004493  
PMID:11042159   PMID:11076861   PMID:11133151   PMID:11156606   PMID:11239431   PMID:11350126   PMID:11731238   PMID:11748150   PMID:12130536   PMID:12477932   PMID:12508309   PMID:12514217  
PMID:12612091   PMID:12842915   PMID:12912911   PMID:12971893   PMID:12975368   PMID:14651920   PMID:14770308   PMID:14999075   PMID:15046721   PMID:15163632   PMID:15198674   PMID:15212142  
PMID:15226823   PMID:15240797   PMID:15489334   PMID:15496441   PMID:15509736   PMID:15576410   PMID:15617678   PMID:15835924   PMID:15879553   PMID:15890332   PMID:15893981   PMID:15965470  
PMID:16079153   PMID:16133146   PMID:16141072   PMID:16141073   PMID:16151855   PMID:16196028   PMID:16226707   PMID:16229973   PMID:16237179   PMID:16280634   PMID:16288463   PMID:16517089  
PMID:16518823   PMID:16537572   PMID:16602821   PMID:16606357   PMID:16611825   PMID:16679559   PMID:16715082   PMID:16774995   PMID:16790476   PMID:16873583   PMID:16882015   PMID:16920270  
PMID:17024657   PMID:17084361   PMID:17093077   PMID:17205580   PMID:17298852   PMID:17478475   PMID:17507395   PMID:17537790   PMID:17699610   PMID:17804638   PMID:17913789   PMID:17915208  
PMID:18001149   PMID:18043734   PMID:18053187   PMID:18286188   PMID:18345009   PMID:18366138   PMID:18367558   PMID:18371380   PMID:18388738   PMID:18498095   PMID:18506029   PMID:18509043  
PMID:18551627   PMID:18599437   PMID:18615557   PMID:18655203   PMID:18973680   PMID:18986511   PMID:19056494   PMID:19103804   PMID:19146812   PMID:19217427   PMID:19235728   PMID:19265663  
PMID:19287386   PMID:19332887   PMID:19389366   PMID:19515912   PMID:19525946   PMID:19607792   PMID:19666823   PMID:19734891   PMID:19805360   PMID:19820705   PMID:19838179   PMID:19884655  
PMID:19906978   PMID:19915564   PMID:20144603   PMID:20170731   PMID:20206619   PMID:20237272   PMID:20400693   PMID:20510365   PMID:20549747   PMID:20685095   PMID:20935640   PMID:20980600  
PMID:21031554   PMID:21042809   PMID:21068328   PMID:21081123   PMID:21125652   PMID:21171323   PMID:21192082   PMID:21194568   PMID:21220101   PMID:21267068   PMID:21289193   PMID:21298037  
PMID:21319224   PMID:21349854   PMID:21354308   PMID:21510873   PMID:21620951   PMID:21666133   PMID:21677750   PMID:21693512   PMID:21766338   PMID:21841314   PMID:21862448   PMID:21873635  
PMID:21938553   PMID:21943603   PMID:21989918   PMID:22017987   PMID:22031906   PMID:22069190   PMID:22071110   PMID:22095278   PMID:22173850   PMID:22186729   PMID:22232070   PMID:22266424  
PMID:22279223   PMID:22345400   PMID:22360968   PMID:22365545   PMID:22461560   PMID:22522401   PMID:22578469   PMID:22581784   PMID:22645310   PMID:22675209   PMID:22689348   PMID:22689954  
PMID:22766236   PMID:22789544   PMID:22828627   PMID:22951639   PMID:22956844   PMID:22998872   PMID:23042737   PMID:23100420   PMID:23160044   PMID:23180766   PMID:23199377   PMID:23228673  
PMID:23259060   PMID:23293287   PMID:23349620   PMID:23353076   PMID:23395391   PMID:23396189   PMID:23454479   PMID:23595735   PMID:23615280   PMID:23637172   PMID:23643381   PMID:23643936  
PMID:23644063   PMID:23665444   PMID:23691221   PMID:23775842   PMID:23802628   PMID:23826407   PMID:23828756   PMID:23861879   PMID:23862023   PMID:23863479   PMID:23942126   PMID:24114376  
PMID:24131868   PMID:24154525   PMID:24431450   PMID:24760871   PMID:24932636   PMID:24948802   PMID:24983448   PMID:25027319   PMID:25041855   PMID:25079316   PMID:25116467   PMID:25122651  
PMID:25138596   PMID:25182747   PMID:25273085   PMID:25282615   PMID:25285789   PMID:25391964   PMID:25406396   PMID:25433207   PMID:25513817   PMID:25535838   PMID:25564653   PMID:25601031  
PMID:25888505   PMID:25936505   PMID:25999820   PMID:26073082   PMID:26156989   PMID:26261006   PMID:26296243   PMID:26311517   PMID:26371318   PMID:26382033   PMID:26457609   PMID:26542012  
PMID:26655900   PMID:26657772   PMID:26701169   PMID:26740489   PMID:26798014   PMID:26940020   PMID:27026076   PMID:27067865   PMID:27076429   PMID:27152740   PMID:27225772   PMID:27367508  
PMID:27392482   PMID:27469598   PMID:27641601   PMID:27719760   PMID:27966429   PMID:28039900   PMID:28280459   PMID:28329690   PMID:28334861   PMID:28431046   PMID:28435883   PMID:28475893  
PMID:28489004   PMID:28506990   PMID:28560839   PMID:28674667   PMID:28684471   PMID:28728023   PMID:28808228   PMID:28837861   PMID:29209878   PMID:29317485   PMID:29420689   PMID:29457656  
PMID:29507213   PMID:29546593   PMID:29569362   PMID:29570114   PMID:29623545   PMID:29732603   PMID:29874580   PMID:29899142   PMID:30076883   PMID:30240734   PMID:30250269   PMID:30252950  
PMID:30256452   PMID:30338292   PMID:30680690   PMID:30765249   PMID:30889310   PMID:30914320   PMID:30951662   PMID:31051217   PMID:31065682   PMID:31147466   PMID:31315048   PMID:31355196  
PMID:31462248   PMID:31586559   PMID:31587290   PMID:31731293   PMID:31749685   PMID:31758234   PMID:31816056   PMID:31841517   PMID:31845732   PMID:31845734   PMID:32047912   PMID:32049024  
PMID:32093736   PMID:32097653   PMID:32184163   PMID:32238932   PMID:32291340   PMID:32562661   PMID:32735823   PMID:32812201   PMID:32994417   PMID:33116259   PMID:33277484   PMID:33340715  
PMID:33393905   PMID:33602870   PMID:33739968   PMID:34272903   PMID:34321999   PMID:34407390   PMID:34428430   PMID:34469723   PMID:34519339   PMID:34557909   PMID:34624687   PMID:34644112  
PMID:35110543   PMID:35175194   PMID:35231638   PMID:35713404   PMID:35815610   PMID:35974052   PMID:35997251   PMID:36044858   PMID:36196585   PMID:36263009   PMID:36303068   PMID:36417873  
PMID:36669109   PMID:36782228   PMID:36916004   PMID:37125418   PMID:37369584   PMID:37439013   PMID:37612280   PMID:37688656   PMID:37838801   PMID:37848288   PMID:38057582   PMID:38062045  
PMID:38101413   PMID:38176908   PMID:38355793   PMID:38383496   PMID:38452824   PMID:38636517   PMID:38830761   PMID:38960088  


Genomics

Comparative Map Data
Fabp7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391057,661,019 - 57,664,546 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1057,660,977 - 57,664,546 (+)EnsemblGRCm39 Ensembl
GRCm381057,784,923 - 57,788,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1057,784,881 - 57,788,450 (+)EnsemblGRCm38mm10GRCm38
MGSCv371057,504,729 - 57,508,256 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361057,473,336 - 57,476,865 (+)NCBIMGSCv36mm8
Celera1058,602,332 - 58,605,859 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.25NCBI
FABP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386122,749,201 - 122,784,074 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6122,779,716 - 122,784,074 (+)EnsemblGRCh38hg38GRCh38
GRCh376123,070,346 - 123,105,219 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366123,142,345 - 123,146,918 (+)NCBINCBI36Build 36hg18NCBI36
Build 346123,142,344 - 123,146,915NCBI
Celera6123,844,958 - 123,849,530 (+)NCBICelera
Cytogenetic Map6q22.31NCBI
HuRef6120,677,663 - 120,682,239 (+)NCBIHuRef
CHM1_16123,364,462 - 123,369,035 (+)NCBICHM1_1
T2T-CHM13v2.06123,937,487 - 123,972,367 (+)NCBIT2T-CHM13v2.0
Fabp7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82037,667,125 - 37,673,299 (+)NCBIGRCr8
mRatBN7.22037,123,193 - 37,126,725 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2037,123,193 - 37,126,880 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2038,155,265 - 38,158,796 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02037,545,977 - 37,549,508 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02038,273,007 - 38,276,541 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02040,769,624 - 40,773,156 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2040,769,586 - 40,773,349 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02042,501,163 - 42,504,695 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42036,812,518 - 36,816,050 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12036,826,317 - 36,829,850 (+)NCBI
Celera2038,435,937 - 38,439,468 (+)NCBICelera
Cytogenetic Map20q12NCBI
Fabp7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554364,642,584 - 4,646,172 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554364,642,584 - 4,646,172 (+)NCBIChiLan1.0ChiLan1.0
FABP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25142,775,902 - 142,780,393 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16140,675,048 - 140,679,541 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06120,539,905 - 120,574,778 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16124,663,054 - 124,697,908 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6124,663,054 - 124,697,905 (+)Ensemblpanpan1.1panPan2
FABP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1162,084,372 - 62,088,547 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl161,967,129 - 62,088,547 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha162,894,007 - 62,898,188 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0162,288,652 - 62,292,833 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl162,171,111 - 62,314,381 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1162,222,930 - 62,227,107 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0162,010,994 - 62,015,175 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0162,659,387 - 62,663,563 (+)NCBIUU_Cfam_GSD_1.0
Fabp7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946112,979,582 - 112,983,528 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368021,092,404 - 1,101,672 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368021,092,448 - 1,096,293 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FABP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl139,871,537 - 39,876,397 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1139,872,198 - 39,876,272 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2144,098,036 - 44,102,111 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FABP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11351,021,485 - 51,026,060 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1351,021,501 - 51,026,038 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604023,316,435 - 23,321,039 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fabp7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247988,426,825 - 8,430,939 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247988,426,819 - 8,430,949 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

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Variants in Fabp7
76 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:130
Interacting mature miRNAs:141
Transcripts:ENSMUST00000020024, ENSMUST00000165013
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
12904011Cfq11_mconditioned fear QTL 11 (mouse)105648015660940841Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102159119268091639Mouse
4141159Phl2_mprogressive hearing loss 2 (mouse)Not determined104797449970112651Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
10045632Heal16_mwound healing/regeneration 16 (mouse)Not determined103097449964974630Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
26884421Cvht5_mcranial vault height 5, 10 week (mouse)104557609669135830Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
1357558Bmch4_mbone mechanical trait 4 (mouse)Not determined103157713665577284Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884400Huml5_mhumerus length 5, 16 week (mouse)104627609669235830Mouse
27095920Pglq9_mpelvic girdle length QTL 9, 10 week (mouse)103377599670835830Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300898Cfid_mcystic fibrosis intestinal distress (mouse)Not determined102972040363720483Mouse
4141070Ltgq1_mliver triglyceride QTL 1 (mouse)Not determined4123732675237326Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse

Markers in Region
U04827  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381057,788,258 - 57,788,426UniSTSGRCm38
MGSCv371057,508,064 - 57,508,232UniSTSGRCm37
Celera1058,605,667 - 58,605,835UniSTS
Cytogenetic Map10B4UniSTS
Whitehead_YAC10 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000020024   ⟹   ENSMUSP00000020024
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1057,660,977 - 57,664,546 (+)Ensembl
GRCm38.p6 Ensembl1057,784,881 - 57,788,450 (+)Ensembl
Ensembl Acc Id: ENSMUST00000165013   ⟹   ENSMUSP00000131415
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1057,661,019 - 57,662,908 (+)Ensembl
GRCm38.p6 Ensembl1057,784,923 - 57,786,812 (+)Ensembl
RefSeq Acc Id: NM_021272   ⟹   NP_067247
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391057,661,019 - 57,664,546 (+)NCBI
GRCm381057,784,923 - 57,788,450 (+)ENTREZGENE
MGSCv371057,504,729 - 57,508,256 (+)RGD
Celera1058,602,332 - 58,605,859 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_067247   ⟸   NM_021272
- UniProtKB: Q4FJK4 (UniProtKB/Swiss-Prot),   P51880 (UniProtKB/Swiss-Prot),   Q5NDA4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000020024   ⟸   ENSMUST00000020024
Ensembl Acc Id: ENSMUSP00000131415   ⟸   ENSMUST00000165013
Protein Domains
Cytosolic fatty-acid binding proteins

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P51880-F1-model_v2 AlphaFold P51880 1-132 view protein structure

Promoters
RGD ID:8672004
Promoter ID:EPDNEW_M14033
Type:initiation region
Name:Fabp7_1
Description:Mus musculus fatty acid binding protein 7, brain , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381057,784,923 - 57,784,983EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:101916 AgrOrtholog
Ensembl Genes ENSMUSG00000019874 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020024 ENTREZGENE
  ENSMUST00000020024.12 UniProtKB/Swiss-Prot
  ENSMUST00000165013.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Calycin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fatty_acid-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ILBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12140 UniProtKB/Swiss-Prot
MGD MGI:101916 ENTREZGENE
NCBI Gene 12140 ENTREZGENE
PANTHER FATTY ACID-BINDING PROTEIN, BRAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11955 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fabp7 PhenoGen
PRINTS FATTYACIDBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FABP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50814 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9Q0H6_MOUSE UniProtKB/TrEMBL
  FABP7_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q4FJK4 ENTREZGENE
  Q5NDA4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q4FJK4 UniProtKB/Swiss-Prot