Usp15 (ubiquitin specific peptidase 15) - Rat Genome Database

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Gene: Usp15 (ubiquitin specific peptidase 15) Mus musculus
Analyze
Symbol: Usp15
Name: ubiquitin specific peptidase 15
RGD ID: 733297
MGI Page MGI
Description: Enables cysteine-type deubiquitinase activity. Involved in protein deubiquitination. Acts upstream of or within regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator. Predicted to be located in cytosol and nuclear body. Predicted to be active in nucleus. Is expressed in incisor; nasal cavity epithelium; nervous system; submandibular gland primordium; and thymus primordium. Orthologous to human USP15 (ubiquitin specific peptidase 15).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 4921514G19Rik; AI327321; deubiquitinating enzyme 15; E430033I05Rik; Gcap; Gcap18; granule cell antiserum positive 18; mKIAA0529; ubiquitin carboxyl-terminal hydrolase 15; ubiquitin specific protease 15; ubiquitin thioesterase 15; ubiquitin thiolesterase 15; ubiquitin-specific-processing protease 15
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18605   Gm21063  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910122,940,911 - 123,032,924 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10122,940,911 - 123,032,900 (-)EnsemblGRCm39 Ensembl
GRCm3810123,105,006 - 123,197,281 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10123,105,006 - 123,196,995 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710122,550,300 - 122,633,979 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610122,516,304 - 122,599,983 (-)NCBIMGSCv36mm8
Celera10125,493,807 - 125,579,763 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1072.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Usp15Mousechronic myeloid leukemia  ISORGD:733296151667904mRNA, protein:decreased expression:PBMC (human)RGD 
Object Symbol
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Original Reference(s)
Usp15Mousediabetic neuropathy  ISORGD:73329611554173CTD Direct Evidence: marker/mechanismCTDPMID:35478295

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Original Reference(s)
Usp15Mouse1,2-dimethylhydrazine multiple interactionsEXP 6480464[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of USP15 mRNACTDPMID:22206623
Usp15Mouse1-nitropyrene increases expressionISORGD:73329664804641-nitropyrene results in increased expression of USP15 mRNACTDPMID:19041380
Usp15Mouse2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISORGD:73329664804642,2',4,4'-tetrabromodiphenyl ether results in decreased expression of USP15 proteinCTDPMID:31675489
Usp15Mouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of USP15 mRNACTDPMID:21570461
Usp15Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of USP15 mRNACTDPMID:15034205
Usp15Mouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464AHR protein inhibits the reaction [Tetrachlorodibenzodioxin results in increased expression of USP15 mRNA]CTDPMID:15034205
Usp15Mouse2,4,6-tribromophenol increases expressionISORGD:73329664804642,4,6-tribromophenol results in increased expression of USP15 mRNACTDPMID:31675489
Usp15Mouse2,6-dinitrotoluene affects expressionISORGD:62879564804642,6-dinitrotoluene affects the expression of USP15 mRNACTDPMID:21346803
Usp15Mouse3-isobutyl-1-methyl-7H-xanthine multiple interactionsISORGD:7332966480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] more ...CTDPMID:28628672
Usp15Mouse4,4'-diaminodiphenylmethane affects expressionEXP 64804644,4'-diaminodiphenylmethane affects the expression of USP15 mRNACTDPMID:18648102
Usp15Mouse4-hydroxyphenyl retinamide decreases expressionEXP 6480464Fenretinide results in decreased expression of USP15 mRNACTDPMID:28973697
Usp15Mouse6-propyl-2-thiouracil increases expressionISORGD:6287956480464Propylthiouracil results in increased expression of USP15 mRNACTDPMID:30047161
Usp15Mouseacetohydrazide decreases expressionEXP 6480464acetylhydrazine results in decreased expression of USP15 mRNACTDPMID:15282401
Usp15Mouseacetylsalicylic acid increases expressionISORGD:7332966480464Aspirin results in increased expression of USP15 mRNACTDPMID:11906190
Usp15Mouseacrylamide increases expressionISORGD:6287956480464Acrylamide results in increased expression of USP15 mRNACTDPMID:28959563
Usp15Mouseacrylamide decreases expressionISORGD:6287956480464Acrylamide results in decreased expression of USP15 mRNACTDPMID:28959563
Usp15Mouseaflatoxin B1 increases methylationISORGD:7332966480464Aflatoxin B1 results in increased methylation of USP15 intronCTDPMID:30157460
Usp15Mouseamitrole increases expressionISORGD:6287956480464Amitrole results in increased expression of USP15 mRNACTDPMID:30047161
Usp15Mouseammonium chloride affects expressionISORGD:6287956480464Ammonium Chloride affects the expression of USP15 mRNACTDPMID:16483693
Usp15Mouseantirheumatic drug decreases expressionISORGD:7332966480464Antirheumatic Agents results in decreased expression of USP15 mRNACTDPMID:24449571

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Biological Process
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Original Reference(s)
Usp15MouseBMP signaling pathway involved_inISSUniProtKB:Q9Y4E82290270 UniProtGO_REF:0000024
Usp15MouseBMP signaling pathway involved_inISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mousemonoubiquitinated protein deubiquitination involved_inISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mousemonoubiquitinated protein deubiquitination involved_inISSUniProtKB:Q9Y4E82290270 UniProtGO_REF:0000024
Usp15Mousenegative regulation of antifungal innate immune response involved_inISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mousenegative regulation of antifungal innate immune response involved_inISSUniProtKB:Q9Y4E82290270 UniProtGO_REF:0000024
Usp15Mousenegative regulation of transforming growth factor beta receptor signaling pathway involved_inISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mousenegative regulation of transforming growth factor beta receptor signaling pathway involved_inISSUniProtKB:Q9Y4E82290270 UniProtGO_REF:0000024
Usp15Mousepositive regulation of RIG-I signaling pathway involved_inISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mousepositive regulation of RIG-I signaling pathway involved_inIEAUniProtKB:Q9Y4E8|ensembl:ENSP000002803772290270 EnsemblGO_REF:0000107
Usp15Mouseprotein deubiquitination involved_inIMP 2290270 PMID:32101751MGIPMID:32101751
Usp15Mouseprotein deubiquitination involved_inISSUniProtKB:Q9Y4E82290270 UniProtGO_REF:0000024
Usp15Mouseprotein deubiquitination involved_inISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mouseprotein K27-linked deubiquitination involved_inISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mouseprotein K27-linked deubiquitination involved_inISSUniProtKB:Q9Y4E82290270 UniProtGO_REF:0000024
Usp15Mouseproteolysis involved_inIEAUniProtKB-KW:KW-06452290270 UniProtGO_REF:0000043
Usp15Mouseregulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator acts_upstream_of_or_withinIMP 2290270 PMID:32101751MGIPMID:32101751
Usp15Mouseregulation of RNA metabolic process involved_inISORGD:7332969068941 PMID:32839293UniProtPMID:32839293
Usp15Mousetranscription elongation-coupled chromatin remodeling involved_inIBAPANTHER:PTN002728639|UniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000033
Usp15Mousetranscription elongation-coupled chromatin remodeling involved_inISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
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Cellular Component
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Original Reference(s)
Usp15Mousecytoplasm located_inISSUniProtKB:Q9Y4E82290270 UniProtGO_REF:0000024
Usp15Mousecytoplasm located_inISORGD:6287952290270 GO_CentralGO_REF:0000096
Usp15Mousecytoplasm located_inISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mousecytosol located_inIEAUniProtKB:Q9Y4E8|ensembl:ENSP000002803772290270 EnsemblGO_REF:0000107
Usp15Mousecytosol located_inISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mousemitochondrion located_inIEAUniProtKB-SubCell:SL-01732290270 UniProtGO_REF:0000044
Usp15Mousenuclear body located_inIEAUniProtKB:Q9Y4E8|ensembl:ENSP000002803772290270 EnsemblGO_REF:0000107
Usp15Mousenuclear body located_inISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mousenucleoplasm located_inISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mousenucleus located_inISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mousenucleus located_inISSUniProtKB:Q9Y4E82290270 UniProtGO_REF:0000024
Usp15Mousenucleus located_inISORGD:6287952290270 GO_CentralGO_REF:0000096
Usp15Mousenucleus is_active_inIBAPANTHER:PTN002728652|RGD:628795|UniProtKB:P51784|UniProtKB:Q13107|UniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000033
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Molecular Function
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Original Reference(s)
Usp15Mousecysteine-type deubiquitinase activity enablesISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mousecysteine-type deubiquitinase activity enablesIDA 2290270 PMID:12532266MGIPMID:12532266
Usp15Mousecysteine-type deubiquitinase activity enablesISSUniProtKB:Q9Y4E82290270 UniProtGO_REF:0000024
Usp15Mousecysteine-type deubiquitinase activity enablesISORGD:6287952290270 GO_CentralGO_REF:0000096
Usp15Mousecysteine-type deubiquitinase activity  ISORGD:6287959068941 RGDPMID:10880343|REF_RGD_ID:634484
Usp15Mousecysteine-type endopeptidase activity enablesISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mousecysteine-type endopeptidase activity enablesISSUniProtKB:Q9Y4E82290270 UniProtGO_REF:0000024
Usp15Mousedeubiquitinase activity enablesISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15Mousedeubiquitinase activity enablesIMP 2290270 PMID:32101751MGIPMID:32101751
Usp15Mouseidentical protein binding enablesIEAUniProtKB:Q9Y4E8|ensembl:ENSP000002803772290270 EnsemblGO_REF:0000107
Usp15Mouseidentical protein binding enablesISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15MouseK48-linked deubiquitinase activity enablesISOUniProtKB:Q9Y4E82290270 GO_CentralGO_REF:0000119
Usp15MouseK48-linked deubiquitinase activity enablesIEAUniProtKB:Q9Y4E8|ensembl:ENSP000002803772290270 EnsemblGO_REF:0000107
Usp15Mouseprotein binding enablesISOUniProtKB:Q6ZNK69068941 PMID:32101751IntActPMID:32101751
Usp15Mouseprotein binding enablesISOUniProtKB:Q9H2579068941 PMID:31515488IntActPMID:31515488
Usp15Mouseprotein binding enablesISOUniProtKB:G5E9A7|UniProtKB:P02545|UniProtKB:Q7Z6999068941 PMID:32814053IntActPMID:32814053
Usp15Mouseprotein binding enablesISOUniProtKB:P19474|UniProtKB:Q2TAC2|UniProtKB:Q96EA4|UniProtKB:Q9H257|UniProtKB:Q9Y6D99068941 PMID:25416956IntActPMID:25416956
Usp15Mouseprotein binding enablesISOUniProtKB:P57678|UniProtKB:Q08379|UniProtKB:Q4G0R1|UniProtKB:Q8IYF3-3|UniProtKB:Q9NYA3|UniProtKB:Q9Y6D99068941 PMID:32296183IntActPMID:32296183
Usp15Mouseprotein binding enablesISOUniProtKB:Q86TM69068941 PMID:31477895IntActPMID:31477895
Usp15Mouseprotein binding enablesISOUniProtKB:Q150209068941 PMID:24526689UniProtPMID:24526689
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RGD Manual Annotations


  
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Original Reference(s)
Usp15Mousemitochondrial autophagy pathway   ISORGD:73329610401790 RGD 

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#
Reference Title
Reference Citation
1. The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications. Durcan TM and Fon EA, Genes Dev. 2015 May 15;29(10):989-99. doi: 10.1101/gad.262758.115.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. De-regulated STAT5A/miR-202-5p/USP15/Caspase-6 regulatory axis suppresses CML cell apoptosis and contributes to Imatinib resistance. Nie ZY, etal., J Exp Clin Cancer Res. 2020 Jan 17;39(1):17. doi: 10.1186/s13046-019-1502-7.
6. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
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PMID:7808216   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12520002   PMID:12532266   PMID:12904583   PMID:14610273   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16778019   PMID:18799693   PMID:21219870   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22344298   PMID:24777531   PMID:24850914   PMID:24984263   PMID:26073538  
PMID:26503449   PMID:26686633   PMID:27416755   PMID:27721430   PMID:28190767   PMID:28378742   PMID:30459344   PMID:30874560   PMID:30980801   PMID:31477895   PMID:31933062   PMID:32101751  
PMID:32325033   PMID:32554809   PMID:32814047   PMID:32839293   PMID:33378683   PMID:36163170   PMID:36342281   PMID:36417873   PMID:36635430   PMID:37394587   PMID:37874479   PMID:38355793  
PMID:38750011   PMID:38902237  



Usp15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910122,940,911 - 123,032,924 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10122,940,911 - 123,032,900 (-)EnsemblGRCm39 Ensembl
GRCm3810123,105,006 - 123,197,281 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10123,105,006 - 123,196,995 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710122,550,300 - 122,633,979 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610122,516,304 - 122,599,983 (-)NCBIMGSCv36mm8
Celera10125,493,807 - 125,579,763 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1072.31NCBI
USP15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381262,260,404 - 62,416,389 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1262,260,338 - 62,417,431 (+)EnsemblGRCh38hg38GRCh38
GRCh371262,654,185 - 62,810,169 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361260,940,454 - 61,086,165 (+)NCBINCBI36Build 36hg18NCBI36
Build 341260,940,453 - 61,086,165NCBI
Celera1262,323,221 - 62,468,927 (+)NCBICelera
Cytogenetic Map12q14.1NCBI
HuRef1259,705,057 - 59,854,661 (+)NCBIHuRef
CHM1_11262,622,031 - 62,771,333 (+)NCBICHM1_1
T2T-CHM13v2.01262,239,218 - 62,395,185 (+)NCBIT2T-CHM13v2.0
Usp15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8760,643,611 - 60,805,137 (-)NCBIGRCr8
mRatBN7.2758,756,714 - 58,848,778 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl758,756,872 - 58,848,721 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx760,630,453 - 60,720,966 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0762,833,103 - 62,923,616 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0762,610,431 - 62,700,867 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0766,595,707 - 66,687,707 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl766,595,742 - 66,687,278 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0766,793,539 - 66,885,533 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4762,871,167 - 62,961,405 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1762,891,896 - 62,982,135 (-)NCBI
Celera755,929,201 - 56,019,813 (-)NCBICelera
Cytogenetic Map7q22NCBI
Usp15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554589,403,097 - 9,533,653 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554589,440,645 - 9,533,653 (+)NCBIChiLan1.0ChiLan1.0
USP15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21031,944,328 - 32,090,448 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11231,937,511 - 32,086,939 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01226,533,441 - 26,682,964 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11226,808,337 - 26,954,099 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1226,808,337 - 26,954,099 (-)Ensemblpanpan1.1panPan2
USP15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1105,510,759 - 5,634,954 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl105,510,022 - 5,634,202 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha105,502,702 - 5,627,025 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0105,544,390 - 5,667,454 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl105,544,428 - 5,668,750 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1105,485,628 - 5,610,126 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0105,734,844 - 5,859,330 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0105,874,448 - 5,998,972 (+)NCBIUU_Cfam_GSD_1.0
Usp15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494553,015,395 - 53,131,801 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936545978,280 - 1,095,659 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936545978,318 - 1,094,729 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl526,964,553 - 27,097,444 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1526,964,380 - 27,082,549 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2529,580,789 - 29,800,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
USP15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11158,154,905 - 58,300,431 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1158,154,919 - 58,300,522 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037187,509,595 - 187,654,699 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248025,560,574 - 5,682,300 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248025,559,107 - 5,682,338 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Usp15
3327 total Variants

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:57
Interacting mature miRNAs:62
Transcripts:ENSMUST00000020334
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 65 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
4141742Psds4_mpsoriasis-like skin disease severity 4 (mouse)Not determined122041304124883196Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse

1 to 10 of 65 rows
AI451661  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810123,108,911 - 123,108,997UniSTSGRCm38
MGSCv3710122,545,967 - 122,546,053UniSTSGRCm37
Celera10125,489,473 - 125,489,559UniSTS
Cytogenetic Map10D3UniSTS
Whitehead/MRC_RH101277.22UniSTS
AI327321  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810123,112,896 - 123,113,057UniSTSGRCm38
MGSCv3710122,549,952 - 122,550,113UniSTSGRCm37
Celera10125,493,459 - 125,493,620UniSTS
Cytogenetic Map10D3UniSTS
Whitehead/MRC_RH101277.22UniSTS






1 to 30 of 48 rows
RefSeq Transcripts NM_001301628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_380365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF468037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 48 rows

Ensembl Acc Id: ENSMUST00000020334   ⟹   ENSMUSP00000020334
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10122,947,641 - 123,032,858 (-)Ensembl
GRCm38.p6 Ensembl10123,111,736 - 123,196,953 (-)Ensembl
Ensembl Acc Id: ENSMUST00000217985
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10122,987,423 - 123,032,832 (-)Ensembl
GRCm38.p6 Ensembl10123,151,518 - 123,196,927 (-)Ensembl
Ensembl Acc Id: ENSMUST00000218042
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10122,949,523 - 122,955,386 (-)Ensembl
GRCm38.p6 Ensembl10123,113,618 - 123,119,481 (-)Ensembl
Ensembl Acc Id: ENSMUST00000218079
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10122,966,131 - 123,017,706 (-)Ensembl
GRCm38.p6 Ensembl10123,130,226 - 123,181,801 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219010
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10122,997,352 - 123,032,831 (-)Ensembl
GRCm38.p6 Ensembl10123,161,447 - 123,196,926 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219413
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10122,957,391 - 122,983,235 (-)Ensembl
GRCm38.p6 Ensembl10123,121,486 - 123,147,330 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219619   ⟹   ENSMUSP00000152028
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10122,999,520 - 123,032,831 (-)Ensembl
GRCm38.p6 Ensembl10123,163,615 - 123,196,926 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10122,949,133 - 122,963,790 (-)Ensembl
GRCm38.p6 Ensembl10123,113,228 - 123,127,885 (-)Ensembl
Ensembl Acc Id: ENSMUST00000219992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10122,960,200 - 123,032,871 (-)Ensembl
GRCm38.p6 Ensembl10123,124,295 - 123,196,966 (-)Ensembl
Ensembl Acc Id: ENSMUST00000220284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10122,988,265 - 123,032,846 (-)Ensembl
GRCm38.p6 Ensembl10123,152,360 - 123,196,941 (-)Ensembl
Ensembl Acc Id: ENSMUST00000220377   ⟹   ENSMUSP00000151244
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10122,940,911 - 123,032,900 (-)Ensembl
GRCm38.p6 Ensembl10123,105,006 - 123,196,995 (-)Ensembl
RefSeq Acc Id: NM_001301628   ⟹   NP_001288557
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910122,940,911 - 123,032,924 (-)NCBI
GRCm3810123,105,006 - 123,197,019 (-)NCBI
Celera10125,485,566 - 125,579,859 (-)NCBI
Sequence:
RefSeq Acc Id: NM_027604   ⟹   NP_081880
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910122,940,911 - 123,032,924 (-)NCBI
GRCm3810123,105,006 - 123,197,019 (-)NCBI
MGSCv3710122,550,300 - 122,633,979 (-)RGD
Celera10125,485,566 - 125,579,859 (-)NCBI
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513225   ⟹   XP_006513288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910122,948,619 - 122,983,124 (-)NCBI
GRCm3810123,112,714 - 123,147,223 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513226   ⟹   XP_006513289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910122,948,619 - 122,983,412 (-)NCBI
GRCm3810123,112,714 - 123,147,520 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513227   ⟹   XP_006513290
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910122,948,619 - 122,989,032 (-)NCBI
GRCm3810123,112,714 - 123,151,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513228   ⟹   XP_006513291
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910122,986,862 - 123,032,919 (-)NCBI
GRCm3810123,150,957 - 123,197,281 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155615   ⟹   XP_036011508
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910122,948,619 - 123,032,888 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155616   ⟹   XP_036011509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910122,948,619 - 123,032,888 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936099
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910122,966,903 - 123,032,919 (-)NCBI
Sequence:
RefSeq Acc Id: XR_380365
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910122,966,903 - 123,032,919 (-)NCBI
GRCm3810123,132,956 - 123,197,281 (-)NCBI
Sequence:
1 to 30 of 32 rows
Protein RefSeqs NP_001288557 (Get FASTA)   NCBI Sequence Viewer  
  NP_001415413 (Get FASTA)   NCBI Sequence Viewer  
  NP_001415414 (Get FASTA)   NCBI Sequence Viewer  
  NP_001415415 (Get FASTA)   NCBI Sequence Viewer  
  NP_001415416 (Get FASTA)   NCBI Sequence Viewer  
  NP_081880 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513288 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513289 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513290 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513291 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011508 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011509 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH50042 (Get FASTA)   NCBI Sequence Viewer  
  AAL77418 (Get FASTA)   NCBI Sequence Viewer  
  BAC32683 (Get FASTA)   NCBI Sequence Viewer  
  BAC38854 (Get FASTA)   NCBI Sequence Viewer  
  BAC65583 (Get FASTA)   NCBI Sequence Viewer  
  BAE21887 (Get FASTA)   NCBI Sequence Viewer  
  BAE26626 (Get FASTA)   NCBI Sequence Viewer  
  BAE36413 (Get FASTA)   NCBI Sequence Viewer  
  BAE36566 (Get FASTA)   NCBI Sequence Viewer  
  BAE37275 (Get FASTA)   NCBI Sequence Viewer  
  BAE37763 (Get FASTA)   NCBI Sequence Viewer  
  BAE40593 (Get FASTA)   NCBI Sequence Viewer  
  EDL24439 (Get FASTA)   NCBI Sequence Viewer  
  EDL24440 (Get FASTA)   NCBI Sequence Viewer  
  EDL24441 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000020334
  ENSMUSP00000020334.9
  ENSMUSP00000151244
1 to 30 of 32 rows
1 to 5 of 11 rows
1 to 5 of 11 rows
RefSeq Acc Id: NP_081880   ⟸   NM_027604
- Peptide Label: isoform 1
- UniProtKB: Q80TY6 (UniProtKB/Swiss-Prot),   Q3UZH0 (UniProtKB/Swiss-Prot),   Q3UL25 (UniProtKB/Swiss-Prot),   Q3TTB2 (UniProtKB/Swiss-Prot),   Q3TGF5 (UniProtKB/Swiss-Prot),   Q80UK9 (UniProtKB/Swiss-Prot),   Q8R5H1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513290   ⟸   XM_006513227
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006513289   ⟸   XM_006513226
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006513288   ⟸   XM_006513225
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006513291   ⟸   XM_006513228
- Peptide Label: isoform X6
- UniProtKB: Q3TPH3 (UniProtKB/TrEMBL)
- Sequence:
DUSP   USP

Name Modeler Protein Id AA Range Protein Structure
AF-Q8R5H1-F1-model_v2 AlphaFold Q8R5H1 1-981 view protein structure

RGD ID:6820079
Promoter ID:MM_KWN:5830
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:UC007HGP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610122,584,296 - 122,585,197 (-)MPROMDB
RGD ID:6820078
Promoter ID:MM_KWN:5832
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000105258,   ENSMUST00000105259,   NM_027604,   UC007HGO.1,   UC007HGQ.1,   UC007HGS.1,   UC007HGT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610122,633,881 - 122,634,632 (-)MPROMDB
RGD ID:8673428
Promoter ID:EPDNEW_M14744
Type:initiation region
Name:Usp15_1
Description:Mus musculus ubiquitin specific peptidase 15 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810123,196,926 - 123,196,986EPDNEW


1 to 40 of 55 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000020124 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000020334 ENTREZGENE
  ENSMUST00000020334.9 UniProtKB/Swiss-Prot
  ENSMUST00000220377 ENTREZGENE
  ENSMUST00000220377.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.2230.10 UniProtKB/Swiss-Prot
  Cysteine proteinases UniProtKB/Swiss-Prot
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
InterPro DUSP-like_sf UniProtKB/Swiss-Prot
  Papain_like_cys_pep_sf UniProtKB/Swiss-Prot
  Pept_C19_DUSP UniProtKB/Swiss-Prot
  Pept_C19ubi-hydrolase_C_CS UniProtKB/Swiss-Prot
  Peptidase_C19 UniProtKB/Swiss-Prot
  RNA3'P_cycl/enolpyr_Trfase_a/b UniProtKB/Swiss-Prot
  Ub_carboxyl-term_hydrolase UniProtKB/Swiss-Prot
  Ub_USP-typ UniProtKB/Swiss-Prot
  Ubiquitin-rel_dom UniProtKB/Swiss-Prot
  UCH/PAN2 UniProtKB/Swiss-Prot
  USP_C UniProtKB/Swiss-Prot
KEGG Report mmu:14479 UniProtKB/Swiss-Prot
MGD MGI:101857 ENTREZGENE
NCBI Gene 14479 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/Swiss-Prot
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 UniProtKB/Swiss-Prot
Pfam DUSP UniProtKB/Swiss-Prot
  Ubiquitin_3 UniProtKB/Swiss-Prot
  UCH UniProtKB/Swiss-Prot
  USP7_C2 UniProtKB/Swiss-Prot
PhenoGen Usp15 PhenoGen
PROSITE DUSP UniProtKB/Swiss-Prot
  UCH_2_1 UniProtKB/Swiss-Prot
  UCH_2_2 UniProtKB/Swiss-Prot
  UCH_2_3 UniProtKB/Swiss-Prot
SMART DUSP UniProtKB/Swiss-Prot
Superfamily-SCOP RNA3'_cycl/enolpyr_transf_A/B UniProtKB/Swiss-Prot
  SSF143791 UniProtKB/Swiss-Prot
  SSF54001 UniProtKB/Swiss-Prot
  SSF54236 UniProtKB/Swiss-Prot
UniProt A0A1W2P8B7_MOUSE UniProtKB/TrEMBL
  Q3TGF5 ENTREZGENE
1 to 40 of 55 rows