Usp15 (ubiquitin specific peptidase 15) - Rat Genome Database

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Gene: Usp15 (ubiquitin specific peptidase 15) Chinchilla lanigera
Analyze
Symbol: Usp15
Name: ubiquitin specific peptidase 15
RGD ID: 8790398
Description: ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); deubiquitinase activity (ortholog); INVOLVED IN BMP signaling pathway (ortholog); monoubiquitinated protein deubiquitination (ortholog); negative regulation of antifungal innate immune response (ortholog); PARTICIPATES IN mitochondrial autophagy pathway; ASSOCIATED WITH chronic myeloid leukemia (ortholog); diabetic neuropathy (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin carboxyl-terminal hydrolase 15
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554589,403,097 - 9,533,653 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554589,440,645 - 9,533,653 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nuclear body  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Usp15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554589,403,097 - 9,533,653 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554589,440,645 - 9,533,653 (+)NCBIChiLan1.0ChiLan1.0
USP15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381262,260,404 - 62,416,389 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1262,260,338 - 62,417,431 (+)EnsemblGRCh38hg38GRCh38
GRCh371262,654,185 - 62,810,169 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361260,940,454 - 61,086,165 (+)NCBINCBI36Build 36hg18NCBI36
Build 341260,940,453 - 61,086,165NCBI
Celera1262,323,221 - 62,468,927 (+)NCBICelera
Cytogenetic Map12q14.1NCBI
HuRef1259,705,057 - 59,854,661 (+)NCBIHuRef
CHM1_11262,622,031 - 62,771,333 (+)NCBICHM1_1
T2T-CHM13v2.01262,239,218 - 62,395,185 (+)NCBIT2T-CHM13v2.0
Usp15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910122,940,911 - 123,032,924 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10122,940,911 - 123,032,900 (-)EnsemblGRCm39 Ensembl
GRCm3810123,105,006 - 123,197,281 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10123,105,006 - 123,196,995 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710122,550,300 - 122,633,979 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610122,516,304 - 122,599,983 (-)NCBIMGSCv36mm8
Celera10125,493,807 - 125,579,763 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1072.31NCBI
Usp15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8760,643,611 - 60,805,137 (-)NCBIGRCr8
mRatBN7.2758,756,714 - 58,848,778 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl758,756,872 - 58,848,721 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx760,630,453 - 60,720,966 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0762,833,103 - 62,923,616 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0762,610,431 - 62,700,867 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0766,595,707 - 66,687,707 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl766,595,742 - 66,687,278 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0766,793,539 - 66,885,533 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4762,871,167 - 62,961,405 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1762,891,896 - 62,982,135 (-)NCBI
Celera755,929,201 - 56,019,813 (-)NCBICelera
Cytogenetic Map7q22NCBI
USP15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21031,944,328 - 32,090,448 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11231,937,511 - 32,086,939 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01226,533,441 - 26,682,964 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11226,808,337 - 26,954,099 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1226,808,337 - 26,954,099 (-)Ensemblpanpan1.1panPan2
USP15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1105,510,759 - 5,634,954 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl105,510,022 - 5,634,202 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha105,502,702 - 5,627,025 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0105,544,390 - 5,667,454 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl105,544,428 - 5,668,750 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1105,485,628 - 5,610,126 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0105,734,844 - 5,859,330 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0105,874,448 - 5,998,972 (+)NCBIUU_Cfam_GSD_1.0
Usp15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494553,015,395 - 53,131,801 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936545978,280 - 1,095,659 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936545978,318 - 1,094,729 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl526,964,553 - 27,097,444 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1526,964,380 - 27,082,549 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2529,580,789 - 29,800,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
USP15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11158,154,905 - 58,300,431 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1158,154,919 - 58,300,522 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037187,509,595 - 187,654,699 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248025,560,574 - 5,682,300 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248025,559,107 - 5,682,338 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000022316   ⟹   ENSCLAP00000022111
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554589,403,097 - 9,533,653 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000022317   ⟹   ENSCLAP00000022112
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554589,440,481 - 9,531,914 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000022318   ⟹   ENSCLAP00000022113
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554589,440,481 - 9,531,914 (+)Ensembl
RefSeq Acc Id: XM_013520992   ⟹   XP_013376446
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554589,440,645 - 9,533,653 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013376446 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022111
  ENSCLAP00000022111.1
  ENSCLAP00000022112.1
  ENSCLAP00000022113.1
Reference Protein Sequences
RefSeq Acc Id: XP_013376446   ⟸   XM_013520992
- UniProtKB: A0A8C2VXI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000022112   ⟸   ENSCLAT00000022317
RefSeq Acc Id: ENSCLAP00000022111   ⟸   ENSCLAT00000022316
RefSeq Acc Id: ENSCLAP00000022113   ⟸   ENSCLAT00000022318
Protein Domains
DUSP   USP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015158 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022316 ENTREZGENE
  ENSCLAT00000022316.1 UniProtKB/TrEMBL
  ENSCLAT00000022317.1 UniProtKB/TrEMBL
  ENSCLAT00000022318.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2230.10 UniProtKB/TrEMBL
  Cysteine proteinases UniProtKB/TrEMBL
InterPro DUSP-like_sf UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Pept_C19_DUSP UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  RNA3'P_cycl/enolpyr_Trfase_a/b UniProtKB/TrEMBL
  Ub_USP-typ UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  USP_C UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
NCBI Gene Usp15 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 UniProtKB/TrEMBL
Pfam DUSP UniProtKB/TrEMBL
  Ubiquitin_3 UniProtKB/TrEMBL
  UCH UniProtKB/TrEMBL
  USP7_C2 UniProtKB/TrEMBL
PROSITE DUSP UniProtKB/TrEMBL
  USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
SMART DUSP UniProtKB/TrEMBL
Superfamily-SCOP SSF143791 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
  SSF55205 UniProtKB/TrEMBL
UniProt A0A8C2VXI2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VZR6_CHILA UniProtKB/TrEMBL
  A0A8C2W570_CHILA UniProtKB/TrEMBL