Chrna9 (cholinergic receptor, nicotinic, alpha polypeptide 9) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Chrna9 (cholinergic receptor, nicotinic, alpha polypeptide 9) Mus musculus
Analyze
Symbol: Chrna9
Name: cholinergic receptor, nicotinic, alpha polypeptide 9
RGD ID: 733288
MGI Page MGI
Description: Enables acetylcholine-gated monoatomic cation-selective channel activity. Acts upstream of or within detection of mechanical stimulus involved in sensory perception of sound; inner ear morphogenesis; and monoatomic cation transport. Predicted to be part of acetylcholine-gated channel complex. Predicted to be active in cholinergic synapse; neuron projection; and postsynaptic specialization membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in lung small cell carcinoma. Orthologous to human CHRNA9 (cholinergic receptor nicotinic alpha 9 subunit).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410015I05Rik; Ac; acetylcholine receptor alpha 9; Acra9; EG666827; Gm8311; neuronal acetylcholine receptor subunit alpha-9; predicted gene, EG666827
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39566,092,317 - 66,134,823 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl566,092,264 - 66,134,669 (+)EnsemblGRCm39 Ensembl
GRCm38565,934,854 - 65,977,486 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,934,921 - 65,977,326 (+)EnsemblGRCm38mm10GRCm38
MGSCv37566,358,363 - 66,368,725 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36566,246,259 - 66,256,621 (+)NCBIMGSCv36mm8
Celera563,263,725 - 63,274,240 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mammalian nicotinic acetylcholine receptors: from structure to function. Albuquerque EX, etal., Physiol Rev. 2009 Jan;89(1):73-120. doi: 10.1152/physrev.00015.2008.
2. New associations of the genetic polymorphisms in nicotinic receptor genes with the risk of lung cancer. Chikova A, etal., Life Sci. 2012 Nov 27;91(21-22):1103-8. doi: 10.1016/j.lfs.2011.12.023. Epub 2012 Jan 17.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8524909   PMID:9183385   PMID:10349636   PMID:10402196   PMID:10771076   PMID:11042159   PMID:11076861   PMID:12204358   PMID:12486177   PMID:12904583   PMID:14610273   PMID:14757515  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:17337281   PMID:17344378   PMID:17698926   PMID:17967808   PMID:18077337   PMID:18420419   PMID:18799693   PMID:19166271   PMID:19790106  
PMID:20140217   PMID:20368690   PMID:20847738   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22647603   PMID:23399696   PMID:24122766   PMID:24853941   PMID:24952961   PMID:25193338  
PMID:25274008   PMID:25352741   PMID:26925951   PMID:27195498   PMID:27349288   PMID:27383594   PMID:27718229   PMID:28077670   PMID:28223528   PMID:28241318   PMID:28302571   PMID:28408300  
PMID:28626386   PMID:28663725   PMID:28725182   PMID:28955208   PMID:28978760   PMID:28983232   PMID:29018331   PMID:29066952   PMID:29163062   PMID:29213229   PMID:29572431   PMID:30030403  
PMID:30414510   PMID:31019507   PMID:31817275   PMID:32393641   PMID:32481512   PMID:33311584   PMID:33907194   PMID:34385908   PMID:35095424   PMID:35431807   PMID:36709241   PMID:37239266  
PMID:38355793   PMID:38738939  


Genomics

Comparative Map Data
Chrna9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39566,092,317 - 66,134,823 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl566,092,264 - 66,134,669 (+)EnsemblGRCm39 Ensembl
GRCm38565,934,854 - 65,977,486 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,934,921 - 65,977,326 (+)EnsemblGRCm38mm10GRCm38
MGSCv37566,358,363 - 66,368,725 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36566,246,259 - 66,256,621 (+)NCBIMGSCv36mm8
Celera563,263,725 - 63,274,240 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.84NCBI
CHRNA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38440,335,333 - 40,355,217 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl440,335,333 - 40,355,217 (+)EnsemblGRCh38hg38GRCh38
GRCh37440,337,350 - 40,357,234 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36440,032,226 - 40,051,730 (+)NCBINCBI36Build 36hg18NCBI36
Build 34440,178,396 - 40,197,901NCBI
Celera440,778,936 - 40,798,410 (+)NCBICelera
Cytogenetic Map4p14NCBI
HuRef439,659,308 - 39,679,373 (+)NCBIHuRef
CHM1_1440,336,462 - 40,356,347 (+)NCBICHM1_1
T2T-CHM13v2.0440,309,008 - 40,328,903 (+)NCBIT2T-CHM13v2.0
Chrna9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81442,588,948 - 42,595,669 (-)NCBIGRCr8
mRatBN7.21442,235,218 - 42,241,939 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1442,235,226 - 42,242,192 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1442,589,138 - 42,595,865 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01443,889,187 - 43,895,914 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01442,369,041 - 42,375,781 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01443,883,450 - 43,890,171 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1443,883,458 - 43,890,171 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01443,670,525 - 43,677,246 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41444,906,566 - 44,913,821 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11444,908,960 - 44,916,212 (-)NCBI
Celera1441,388,099 - 41,394,795 (-)NCBICelera
Cytogenetic Map14p11NCBI
Chrna9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554437,148,604 - 7,157,824 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554437,148,604 - 7,157,824 (-)NCBIChiLan1.0ChiLan1.0
CHRNA9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2340,513,841 - 40,536,734 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1440,705,676 - 40,728,580 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0434,654,043 - 34,675,984 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1440,509,475 - 40,528,869 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl440,509,475 - 40,528,869 (+)Ensemblpanpan1.1panPan2
CHRNA9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1372,190,431 - 72,204,092 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl372,190,555 - 72,203,404 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha374,738,924 - 74,752,324 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0372,956,919 - 72,970,323 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl372,956,998 - 72,985,424 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1372,219,775 - 72,233,167 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0372,376,073 - 72,389,479 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0372,760,280 - 72,773,685 (-)NCBIUU_Cfam_GSD_1.0
Chrna9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528538,495,169 - 38,506,158 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364827,792,292 - 7,801,152 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364827,792,292 - 7,801,152 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHRNA9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl831,443,043 - 31,456,384 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1831,430,933 - 31,456,385 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2833,099,230 - 33,123,294 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHRNA9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1279,952,344 - 9,979,638 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl279,953,115 - 9,971,811 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604756,318,015 - 56,338,505 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chrna9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476126,636,506 - 26,645,471 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476126,636,242 - 26,646,072 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chrna9
2990 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:709
Count of miRNA genes:443
Interacting mature miRNAs:510
Transcripts:ENSMUST00000031108, ENSMUST00000123357, ENSMUST00000126313, ENSMUST00000128613, ENSMUST00000141080, ENSMUST00000145599, ENSMUST00000153624
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54458584378585965Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54632260680322606Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54632260680322606Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse

Markers in Region
PMC151834P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38565,976,842 - 65,977,244UniSTSGRCm38
MGSCv37566,368,081 - 66,368,483UniSTSGRCm37
Celera563,273,596 - 63,273,998UniSTS
Cytogenetic Map5C3.1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000031108   ⟹   ENSMUSP00000031108
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,124,467 - 66,134,669 (+)Ensembl
GRCm38.p6 Ensembl565,967,124 - 65,977,326 (+)Ensembl
Ensembl Acc Id: ENSMUST00000200881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,092,291 - 66,093,257 (+)Ensembl
GRCm38.p6 Ensembl565,934,948 - 65,935,914 (+)Ensembl
Ensembl Acc Id: ENSMUST00000201664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,133,239 - 66,134,483 (+)Ensembl
GRCm38.p6 Ensembl565,975,896 - 65,977,140 (+)Ensembl
Ensembl Acc Id: ENSMUST00000201814   ⟹   ENSMUSP00000144364
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,092,271 - 66,128,581 (+)Ensembl
GRCm38.p6 Ensembl565,934,928 - 65,971,238 (+)Ensembl
Ensembl Acc Id: ENSMUST00000202234
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,092,318 - 66,101,701 (+)Ensembl
GRCm38.p6 Ensembl565,934,975 - 65,944,358 (+)Ensembl
Ensembl Acc Id: ENSMUST00000202735
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,092,316 - 66,101,685 (+)Ensembl
GRCm38.p6 Ensembl565,934,973 - 65,944,342 (+)Ensembl
Ensembl Acc Id: ENSMUST00000202957   ⟹   ENSMUSP00000144147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,092,264 - 66,126,503 (+)Ensembl
GRCm38.p6 Ensembl565,934,921 - 65,969,160 (+)Ensembl
RefSeq Acc Id: NM_001081104   ⟹   NP_001074573
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39566,124,714 - 66,134,669 (+)NCBI
GRCm38565,967,124 - 65,977,486 (+)NCBI
MGSCv37566,358,363 - 66,368,725 (+)RGD
Celera563,263,725 - 63,274,240 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001403681   ⟹   NP_001390610
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39566,092,317 - 66,134,669 (+)NCBI
RefSeq Acc Id: NM_001403682   ⟹   NP_001390611
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39566,112,070 - 66,134,669 (+)NCBI
RefSeq Acc Id: NM_001403683   ⟹   NP_001390612
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39566,092,317 - 66,134,669 (+)NCBI
RefSeq Acc Id: NM_001403684   ⟹   NP_001390613
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39566,108,641 - 66,134,669 (+)NCBI
RefSeq Acc Id: XM_030254389   ⟹   XP_030110249
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39566,108,538 - 66,134,823 (+)NCBI
GRCm38565,951,195 - 65,977,480 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001074573   ⟸   NM_001081104
- Peptide Label: isoform a
- UniProtKB: G3X8Z7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030110249   ⟸   XM_030254389
- Peptide Label: isoform X3
Ensembl Acc Id: ENSMUSP00000031108   ⟸   ENSMUST00000031108
Ensembl Acc Id: ENSMUSP00000144147   ⟸   ENSMUST00000202957
Ensembl Acc Id: ENSMUSP00000144364   ⟸   ENSMUST00000201814
RefSeq Acc Id: NP_001390612   ⟸   NM_001403683
- Peptide Label: isoform d
RefSeq Acc Id: NP_001390610   ⟸   NM_001403681
- Peptide Label: isoform b
RefSeq Acc Id: NP_001390613   ⟸   NM_001403684
- Peptide Label: isoform d
RefSeq Acc Id: NP_001390611   ⟸   NM_001403682
- Peptide Label: isoform c
Protein Domains
Neurotransmitter-gated ion-channel ligand-binding   Neurotransmitter-gated ion-channel transmembrane

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3X8Z7-F1-model_v2 AlphaFold G3X8Z7 1-479 view protein structure

Promoters
RGD ID:6886790
Promoter ID:EPDNEW_M6846
Type:initiation region
Name:AK138853_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38565,934,974 - 65,935,034EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1202403 AgrOrtholog
Ensembl Genes ENSMUSG00000029205 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031108 ENTREZGENE
  ENSMUST00000031108.9 UniProtKB/TrEMBL
  ENSMUST00000201814.4 UniProtKB/TrEMBL
  ENSMUST00000202957.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/TrEMBL
InterPro Neur_chan_lig-bd UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/TrEMBL
  Neur_channel UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/TrEMBL
  Nicotinic_acetylcholine_rcpt UniProtKB/TrEMBL
KEGG Report mmu:231252 UniProtKB/TrEMBL
MGD MGI:1202403 ENTREZGENE
NCBI Gene Chrna9 ENTREZGENE
PANTHER NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-9 UniProtKB/TrEMBL
  PTHR18945 UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/TrEMBL
PhenoGen Chrna9 PhenoGen
PRINTS NICOTINICR UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/TrEMBL
Superfamily-SCOP Neu_channel_TM UniProtKB/TrEMBL
  Neur_chan_LBD UniProtKB/TrEMBL
UniProt A0A0J9YUW0_MOUSE UniProtKB/TrEMBL
  D3Z2J9_MOUSE UniProtKB/TrEMBL
  G3X8Z7 ENTREZGENE, UniProtKB/TrEMBL
  Q8K3J4_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-09 Chrna9  cholinergic receptor, nicotinic, alpha polypeptide 9  EG666827  predicted gene, EG666827  Data merged from RGD:1613733 737654 PROVISIONAL