CHRNA9 (cholinergic receptor nicotinic alpha 9 subunit)

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Gene: CHRNA9 (cholinergic receptor nicotinic alpha 9 subunit) Sus scrofa

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Symbol:

CHRNA9

Name:

cholinergic receptor nicotinic alpha 9 subunit

RGD ID:

14088398

Description:

ENCODES a protein that exhibits acetylcholine-gated monoatomic cation-selective channel activity (ortholog); transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (ortholog); INVOLVED IN detection of mechanical stimulus involved in sensory perception of sound (ortholog); inner ear morphogenesis (ortholog); monoatomic cation transport (ortholog); PARTICIPATES IN acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH Hyperglycinemia, Lactic Acidosis, and Seizures (ortholog); lung small cell carcinoma (ortholog); Neoplastic Cell Transformation (ortholog); FOUND IN acetylcholine-gated channel complex (ortholog); cholinergic synapse (ortholog); postsynaptic specialization membrane (ortholog); INTERACTS WITH (S)-nicotine; carbon dioxide; dioxygen

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

neuronal acetylcholine receptor subunit alpha-9

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	31,443,043 - 31,456,384 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	31,430,933 - 31,456,385 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	33,099,230 - 33,123,294 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Hyperglycinemia, Lactic Acidosis, and Seizures (ISO)

lung small cell carcinoma (ISO)

Neoplastic Cell Transformation (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (EXP)

carbon dioxide (EXP)

dioxygen (EXP)

nicotine (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of mechanical stimulus involved in sensory perception of sound (IEA,ISO)

excitatory postsynaptic potential (IEA)

inner ear morphogenesis (IEA,ISO)

membrane depolarization (IEA)

monoatomic cation transport (IEA,ISO)

monoatomic ion transmembrane transport (IEA)

negative regulation of ERK1 and ERK2 cascade (ISO)

positive regulation of cytosolic calcium ion concentration (IEA,ISO)

regulation of postsynaptic membrane potential (IEA)

response to auditory stimulus (IEA)

Cellular Component

acetylcholine-gated channel complex (IEA,ISO)

cholinergic synapse (ISO)

neuron projection (IBA)

plasma membrane (IBA,IEA)

postsynaptic membrane (IEA)

postsynaptic specialization membrane (ISO)

synapse (IBA,IEA)

transmembrane transporter complex (IBA)

Molecular Function

acetylcholine-gated monoatomic cation-selective channel activity (IBA,IEA,ISO)

protein binding (ISO)

transmembrane signaling receptor activity (IEA)

transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

acetylcholine signaling pathway via nicotinic acetylcholine receptor (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CHRNA9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	31,443,043 - 31,456,384 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	31,430,933 - 31,456,385 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	33,099,230 - 33,123,294 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHRNA9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	40,335,333 - 40,355,217 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	40,335,333 - 40,355,217 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	40,337,350 - 40,357,234 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	40,032,226 - 40,051,730 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	40,178,396 - 40,197,901	NCBI
Celera	4	40,778,936 - 40,798,410 (+)	NCBI		Celera
Cytogenetic Map	4	p14	NCBI
HuRef	4	39,659,308 - 39,679,373 (+)	NCBI		HuRef
CHM1_1	4	40,336,462 - 40,356,347 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	40,309,008 - 40,328,903 (+)	NCBI		T2T-CHM13v2.0

Chrna9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	66,092,317 - 66,134,823 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	66,092,264 - 66,134,669 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	65,934,854 - 65,977,486 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	65,934,921 - 65,977,326 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	66,358,363 - 66,368,725 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	66,246,259 - 66,256,621 (+)	NCBI		MGSCv36	mm8
Celera	5	63,263,725 - 63,274,240 (+)	NCBI		Celera
Cytogenetic Map	5	C3.1	NCBI
cM Map	5	33.84	NCBI

Chrna9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	42,588,948 - 42,595,669 (-)	NCBI		GRCr8
mRatBN7.2	14	42,235,218 - 42,241,939 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	42,235,226 - 42,242,192 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	42,589,138 - 42,595,865 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	43,889,187 - 43,895,914 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	42,369,041 - 42,375,781 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	43,883,450 - 43,890,171 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	43,883,458 - 43,890,171 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	43,670,525 - 43,677,246 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	44,906,566 - 44,913,821 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	44,908,960 - 44,916,212 (-)	NCBI
Celera	14	41,388,099 - 41,394,795 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

Chrna9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	7,148,604 - 7,157,824 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955443	7,148,604 - 7,157,824 (-)	NCBI	ChiLan1.0	ChiLan1.0

CHRNA9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	40,513,841 - 40,536,734 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	40,705,676 - 40,728,580 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	34,654,043 - 34,675,984 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	40,509,475 - 40,528,869 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	40,509,475 - 40,528,869 (+)	Ensembl	panpan1.1		panPan2

CHRNA9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	72,190,431 - 72,204,092 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	72,190,555 - 72,203,404 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	74,738,924 - 74,752,324 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	72,956,919 - 72,970,323 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	72,956,998 - 72,985,424 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	72,219,775 - 72,233,167 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	72,376,073 - 72,389,479 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	72,760,280 - 72,773,685 (-)	NCBI		UU_Cfam_GSD_1.0

Chrna9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	38,495,169 - 38,506,158 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	7,792,292 - 7,801,152 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	7,792,292 - 7,801,152 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHRNA9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	9,952,344 - 9,979,638 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	9,953,115 - 9,971,811 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	56,318,015 - 56,338,505 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chrna9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624761	26,636,506 - 26,645,471 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624761	26,636,242 - 26,646,072 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CHRNA9
1138 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
8	2	20	1	2	5	7	7	20	1	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001244806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013978601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013978602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013978603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK343271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU407133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01073144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000032423 ⟹ ENSSSCP00000026083

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	8	31,443,043 - 31,456,384 (+)	Ensembl

RefSeq Acc Id:

NM_001244806 ⟹ NP_001231735

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	8	31,443,043 - 31,456,384 (+)	NCBI

Sequence:

show sequence

GCCCAAGCTCTCCATCTGCTGCGTGGACAGTGGCAGATTGGGTTTGCTGTGCCCAGATCCTTCC
CATTCACAAAGCGAAGTAGAAGACTGTGCTTCCTGGCTGGGAATTTATACAGGCTTAGGGAAAA
GATGAACTGGCCCCATTCCTGCATCTCCTTTTGCTGGATTTACTTTGCTGCCTCCAGACTGGGA
GCCGTAGACACAGCAAATGGAAAATATGCTCAGAAGTTGTTTAACGACCTTTTTGAAGATTATT
CCAATGCTCTTCGTCCAGTAGAGGATACAGATAAAGTCCTGAATGTCACGCTCCAGATTACACT
TTCTCAGATTAAGGATATGGATGAAAGAAACCAAATTCTGACTGCCTATTTATGGATCCGCCAA
ATCTGGCACGACGCATATCTCACGTGGGATAGAGACATGTATGATGGACTGGACTCCATCAGGA
TCCCCAGCGACCTGGTGTGGAGGCCGGATATTGTCCTGTATAACAAGGCTGATGATGACTCTTC
TGAGCCTGTGAACACCAATGTGGTCCTGCGGTATGATGGGCTGATCACCTGGGACGCACCAGCC
ATCACCAAAAGCTCCTGTGTGGTGGATGTCACCTACTTCCCCTTTGATCATCAGCAGTGCAACC
TGACCTTTGGTTCCTGGACCTACAATGGCAATCAGGTGGACATATTCAATGCCCTGGACAGCGG
AGACCTCTCGGACTTCATCGAGGATGTGGAGTGGGAGGTCCACGGGATGCCTGCTGTGAAGAAC
GTGATCTCCTACGGCTGCTGCTCTGAGCCTTACCCGGACGTGACATTCACTCTCCTTCTGAAGA
GGAGGTCCTCTTTCTATATCGTCAATCTTCTCATTCCATGCGTGCTCATATCTTTTCTGGCTCC
CTTGAGTTTTTATCTCCCAGCAGCTTCTGGAGAAAAGGTCTCCCTGGGAGTGACCATCCTTTTG
GCCATGACTGTATTTCAGCTCATGGTGGCAGAGATCATGCCGGCCTCAGAAAATGTCCCTCTGA
TAGGCAAATACTACATAGCCACAATGGCCTTGATCACCGCCTCCACCGCCTTGACCATCATGGT
GATGAATATCCACTTCTGCGGGGCCGAGGCCCGGCCAGTGCCACACTGGGCAAGGGTGGTCATC
CTGAAATACATGTCCGGGCTCTTGTTTGTCTACGACGTGGGTGAGAGCTGCCTTGGCCCTCGCC
ACGACAGGGAGCGGGGCCGCCTCTCCAAGGTTTATGGCCAGCTTCCAGAGCCTGATCTGAAAAC
TGCCAGAAACAAAGACCTTCCCAGAAAGAAGGAAAGGAACAAACTTGTAAAGAACGACTTGAGG
TACCCGGGTGAGACTCTGCAGGATGCTGACAGCTACTGTGCACGGTATACAGTGTTGACGAGGA
ATATCGAATACATTGCCAAGTGCCTCAAAGACCACAAGGCCACCCATTCCAAGGGGAGTGAGTG
GAAAAAGGTTGCAAAAGTCATAGACCGATTCTTCATGTGGGTTTTTTTCATTATGGTGTTTGTG
ATGACTATTTTGATCATAGCAAGAGCAGATTAAGTAGCATTTGGTGTGTGGGGATAAATCAATA
AAATTCCCTGTGATCTGTTAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_013978601 ⟹ XP_013834055

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	8	31,441,913 - 31,456,385 (+)	NCBI

Sequence:

show sequence

TGAGCCACGACAGGAACTCCGACTTTTTTTTTTTAAACAACTAGTAAACCTTGGATAACTTGGT
AAATACAGAAATTCTGTATCTACAAAGCTGGTCAGAGATAAAAATGACTAACCTTTGCGTAGTG
CTGTACCATTTGCAAAGTGCTTCTTTATACACTATCCCAATAGTTCTGGGAGAACACTATTTAT
AGAATGTCTCTAATATCCTATTATTATTGATAGTATAGAGAGTATTATTTTCCAGTCTCTAGCT
CAGGAAAGCTCAGTATTCTAGAGCGAGGCAGTGTTTGGGCTGGCGTTCAAACCCAGGTCTTCCA
CTCCTAATCCAAATCACAGTGCTGCTGCTGCTTCTGAAGAGAAAGGATGCTCTCCTCTTATCCA
ACTCCCACCCCCACCCTCACCTCCCACCTCCTCCCACAGCCACTCACACTCATTACTATACAAG
ATCAGTGCCCAGTGGGACAACTGAGGAAGTGATGAGAAGCGGAGGGCAGAGAAGACACCCAAAT
GTCAGTCTGTTCTGCAGATCGTGGAACTGCTCTTCTTTCCCTCTTCAAATGCCACTCAAAGCAC
ATAGAGCCTAGGAGTTCCCGTCGTGGCTCCGTGAAAATGAATCTGACTAGTATCCATGAGGATG
CAGGTTAGATCCCTGGTCTTGCTCAGTGGGTTAAGGATCTGACGTTGCTCTGGCTGTGGTGGAG
GCCAGCAGCTATATCTCCGATTTGACCCCTAGCCTGGGAACCTCCATATGTCACGGGTTTTGCC
TAAAAAGACCAACAAAAAAAGGCACATAGAGCCTTTCCGGACTGCTGCCCCATGCCTGGGTCAG
TTCAACTTTCCTTAGTGTCCAGACTCAGGCAGAATCTTCTCATTGTGGGTATAGACATCTGCTC
AGATGGGATCTTGCGGGGGTTGGGGGGAAGGCTCCTACTTATCTTCCATTCAAAGTTTGGTCTG
GATGTCCCTGCCAGTGGTAGCTAGGGACCTTCAACTGGGACGGCCCCCCCCCAGAGCAGCACCA
CCTGACCTAACCCGCTTGGGACTCCTGGCATCTCAGCTGCGGGAGCTGCCAGTCTCGGATTACC
GAGGGGAGGATCTCGGGACCTTGGGCTGTCTGTGGGCTGCAAGCCCAAGCTCTCCATCTGCTGC
GTGGACAGTGGCAGATTGGGTTTGCTGTGCCCAGATCCTTCCCATTCACAAAGCGAAGTAGAAG
ACTGTGCTGGGAATTTATACAGGCTTAGGGAAAAGATGAACTGGCCCCATTCCTGCATCTCCTT
TTGCTGGATTTACTTTGCTGCCTCCAGACTGGGAGCAGCCGTAGACACAGCAGATGGAAAATAT
GCTCAGAAGTTGTTTAACGACCTTTTTGAAGATTATTCCAATGCTCTTCGTCCAGTAGAGGATA
CAGATAAAGTCCTGAATGTCACGCTCCAGATTACACTTTCTCAGATTAAGGATATGGATGAAAG
AAACCAAATTCTGACTGCCTATTTATGGATCCGCCAAATCTGGCATGACGCATATCTCACGTGG
GATAGAGACATGTATGATGGACTGGACTCCATCAGGATCCCCAGCGACCTGGTGTGGAGGCCGG
ATATTGTCCTGTATAACAAGGCTGATGATGACTCTTCTGAGCCTGTGAACACCAATGTGGTCCT
GCGGTATGATGGGCTGATCACCTGGGACGCACCAGCCATCACCAAAAGCTCCTGTGTGGTGGAT
GTCACCTACTTCCCCTTTGATCATCAGCAGTGCAACCTGACCTTTGGTTCCTGGACCTACAATG
GCAATCAGGTGGACATATTCAATGCCCTGGACAGCGGAGACCTCTCGGACTTCATCGAGGATGT
GGAGTGGGAGGTCCACGGGATGCCTGCTGTGAAGAACGTGATCTCCTACTGCTGCTGCTCTGAG
CCTTACCCGGACGTGACATTCACTCTCCTTCTGAAGAGGAGGTCCTCTTTCTATATCGTCAATC
TTCTCATTCCATGCGTGCTCATATCTTTTCTGGCTCCCTTGAGTTTTTATCTCCCAGCAGCTTC
TGGAGAAAAGGTCTCCCTGGGAGTGACCATCCTTTTGGCCATGACTGTATTTCAGCTCATGGTG
GCAGAGATCATGCCGGCCTCAGAAAATGTCCCTCTGATAGGCAAATACTACATAGCCACAATGG
CCTTGATCACCGCCTCCACCGCCTTGACCATCATGGTGATGAATATCCACTTCTGCGGGGCCGA
GGCCCGGCCAGTGCCACACTGGGCAAGGGTGGTCATCCTGAAATACATGTCCAGGCTCTTGTTT
GTCTACGACGTGGGTGAGAGCTGCCTTGGCCCTCGCCACGACAGGGAGCGGGGCCGCCTCTCCA
AGGTTTATGGCCAGCTTCCAGAGCCTGATCTGAAAACTGCCAGAAACAAAGACCTTCCCAGAAA
GAAGGAAAGGAACAAACTTGTAAAGAACGACTTGAGGTACCCGGGTGAGACTCTGCAGGATGCT
GACAGCTACTGTGCACGGTATACAGTGTTGACGAGGAATATCGAATACATTGCCAAGTGCCTCA
AAGACCACAAGGCCACCCATTCCAAGGGGAGTGAGTGGAAAAAGGTCGCAAAAGTCATAGACCG
ATTCTTCATGTGGGTTTTTTTCATTATGGTGTTTGTGATGACTATTTTGATCATAGCAAGAGCA
GATTAAGTAGCATTTGGTGTGTGGGGATAAATCAATAAAATTCCCTGTGATCTGTTC

hide sequence

RefSeq Acc Id:

XM_013978602 ⟹ XP_013834056

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	8	31,430,933 - 31,456,385 (+)	NCBI

Sequence:

show sequence

AAAAAGCAAAATAAATAAATAAGTAAAAAATGAGCTGATTTGCAGAATGAACTCAGAAAAAAAT
TAAGATCAGAGGAAATAGTCTGTTCCCCGGAGTGTTTACATTTTATTCTGAGGGCACAGTGAGT
GGTGTGAAGGGAGGGGATGATAACAGTTCTAAGAAAACTGATTTAAAAAACTGGCACAACTTTT
CCACCACTTTGTGTACTGGACCTTGACCATAGATAGCACTTAAAGCATTAAAAAAACAAAAAAC
ACAAGCAAATGGTTTGCCTACTGTTTTCAAAATTCCCTGTCCAAAAGGAGTGAGAGACCAAGGC
CCACAAACTCCGTGAAGGGTTAGTTCCTTTGGGACCTGATTGTGCTCTGTTAGAAAGTGATCTG
GCTAAGGGATGAGGAAAGAATAATGCAGGAACATTCTAGAAAGTATACTGATTAGGACACGCTG
ACTCTAACAATGTATTTCATAGCTTAAATCTGATGGGAGGTTGTATGATCATAAGCGTTTATCT
ATTAGTCAGAAATCCTAGATAAAGGGATGGATGTCTATAGATTGCGTTTTTGACGGTGTTCCAC
TTTAAGCTATTTTTTTCCGGTGCCATTTCTTTAGAGCTGGTTGAAACCCGTTTATGACGTTATC
TGCAAGGCGCTGTGCAGGGGCCTGCGGGAGTTTACAGAGACACCTGGTGGCTGTTAAGGTGAAG
TAACCCGGCTTTGTTAGAAAATAAAAGATTGGAATTGTGTCTAAAATTTGGTTTTTGTGGTAGA
GAATTTCATTCTTTATTCCAGTTCTTTTTGTAGCTTGCAGTTATGTATTTTAAAAAATAGTCTT
TGATTCTTTCTAATTACTTTTGTAGACTCCAGCCTTTCTTTCCTAAAGAAACCATCAACCGGGT
GAACTAACCAGCTCCATAAGCTGGGTGAAATCTACCCAAGGCCAGGACCACAGCAAGGCAAACA
CAAATTAAGGAGGTGCAAAAACGTCAGTGATGAATACAGATAATATTTTAATGCAATAATTTGA
AAGTCAAAAGTAATGCAAAAAAACGCATTATAAACAAAAATATCAAAATTGTAAATACAGGATT
GCTCTTATTGATTTCCCTTTTTATCTCAGGCCCCCGCAGGGCTCCAAAAGGCACTGAAAAGAGC
CAAGGCACTTGGTGGTCTAGGCGCAGACTGGATTCACGCATGCTCAGTGAATGCATGGCCACCA
GCCCCACCCCCACCCATAGTTTCCCGGATCTTGGGATGTCTTCCTGTCTCCTCTCATTCTAGTC
CAGCGTAAGGAGCCTAGGTCAAGGGCAATGGTAGGACAGAAAATTTAAAAGTTGCCCTGAGGGA
AAAATTTGGAAACGGATTCTTTCAGTTCTGTTTTCAGGACCGTCCTTCCTCTGCCTTCTTCCCA
AATCTGCTTCTCAGAAACGGCTCGAATCATCGGATGAGACCTGGATACCGAGGGCAGGAGGGAA
TGGAAAACAATGTGGTTCTGGCCAACGACTGATCTTAATTTGGTTGTCCAAGACAGTCTCCCCG
GGGCAAGAGGAGGGGCAGGCGATGGCAGTTGGAAACGGACGTTCTTCTGGCCGTAGACACAGCA
GATGGAAAATATGCTCAGAAGTTGTTTAACGACCTTTTTGAAGATTATTCCAATGCTCTTCGTC
CAGTAGAGGATACAGATAAAGTCCTGAATGTCACGCTCCAGATTACACTTTCTCAGATTAAGGA
TATGGATGAAAGAAACCAAATTCTGACTGCCTATTTATGGATCCGCCAAATCTGGCATGACGCA
TATCTCACGTGGGATAGAGACATGTATGATGGACTGGACTCCATCAGGATCCCCAGCGACCTGG
TGTGGAGGCCGGATATTGTCCTGTATAACAAGGCTGATGATGACTCTTCTGAGCCTGTGAACAC
CAATGTGGTCCTGCGGTATGATGGGCTGATCACCTGGGACGCACCAGCCATCACCAAAAGCTCC
TGTGTGGTGGATGTCACCTACTTCCCCTTTGATCATCAGCAGTGCAACCTGACCTTTGGTTCCT
GGACCTACAATGGCAATCAGGTGGACATATTCAATGCCCTGGACAGCGGAGACCTCTCGGACTT
CATCGAGGATGTGGAGTGGGAGGTCCACGGGATGCCTGCTGTGAAGAACGTGATCTCCTACTGC
TGCTGCTCTGAGCCTTACCCGGACGTGACATTCACTCTCCTTCTGAAGAGGAGGTCCTCTTTCT
ATATCGTCAATCTTCTCATTCCATGCGTGCTCATATCTTTTCTGGCTCCCTTGAGTTTTTATCT
CCCAGCAGCTTCTGGAGAAAAGGTCTCCCTGGGAGTGACCATCCTTTTGGCCATGACTGTATTT
CAGCTCATGGTGGCAGAGATCATGCCGGCCTCAGAAAATGTCCCTCTGATAGGCAAATACTACA
TAGCCACAATGGCCTTGATCACCGCCTCCACCGCCTTGACCATCATGGTGATGAATATCCACTT
CTGCGGGGCCGAGGCCCGGCCAGTGCCACACTGGGCAAGGGTGGTCATCCTGAAATACATGTCC
AGGCTCTTGTTTGTCTACGACGTGGGTGAGAGCTGCCTTGGCCCTCGCCACGACAGGGAGCGGG
GCCGCCTCTCCAAGGTTTATGGCCAGCTTCCAGAGCCTGATCTGAAAACTGCCAGAAACAAAGA
CCTTCCCAGAAAGAAGGAAAGGAACAAACTTGTAAAGAACGACTTGAGGTACCCGGGTGAGACT
CTGCAGGATGCTGACAGCTACTGTGCACGGTATACAGTGTTGACGAGGAATATCGAATACATTG
CCAAGTGCCTCAAAGACCACAAGGCCACCCATTCCAAGGGGAGTGAGTGGAAAAAGGTCGCAAA
AGTCATAGACCGATTCTTCATGTGGGTTTTTTTCATTATGGTGTTTGTGATGACTATTTTGATC
ATAGCAAGAGCAGATTAAGTAGCATTTGGTGTGTGGGGATAAATCAATAAAATTCCCTGTGATC
TGTTC

hide sequence

RefSeq Acc Id:

XM_013978603 ⟹ XP_013834057

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	8	31,440,804 - 31,456,385 (+)	NCBI

Sequence:

show sequence

ACAAAAAAAAATTTCAAGTGAGCAACTGAAAGGACTGAGTTAATCAAAAGCAATCAGACTACCA
AGGATGATTACTTTGCAGGCAGCTGTCAGGCAGCTGCCACAGCAGCTAACAGCACGCATTCTCT
GAGCCCTTATCCCCAGGCTGCTGCTTTCTTGCTCGGTGAGGTGGGGCATCAAAGACACACAAAT
AAGGTAGAGAAGGAGGGGAGGCCGAGTTAGCTCAGGGAGCACGTTGGGCTGGGGCGGGTGGCCT
GGATTCTGTCTCTGGCCACGTGCTGCTGGAGGCAAGCCACCCACATCTCCGGATATCAGTTTCC
TCCAGTGGAAATGAGACATTCAACCCAATTTCAAAAGGACCTTTGGTCTCTGAGATTCCAGAGC
GGAAGGGTTTTTGGAGGAGGGAGGCCTGCGCGTGGGCACCAGGAGCTGTCATTTGATGGGTGAC
TCAGACTCGCGTCAGAGAAATAACGTCCTCACAATCAGCACAAGGGCACAGGCAATTAAGAAAC
ACACTTAGCTGATGGCTGGAGTGTCTGTTCCATTCGGAGGATATATTCCTGAAGAGGGACAGGG
TGACTCATCAGACGGCTGTAACCTGATGAAGCAGAGCTATCCAATTTCCTTGCTCTGATTCCAG
GCCAACGACTGATCTTAATTTGGTTGTCCAAGACAGTCTCCCCGGGGCAAGAGGAGGGGCAGGC
GATGGCAGTTGGAAACGGACGTTCTTCTGGCCGTAGACACAGCAGATGGAAAATATGCTCAGAA
GTTGTTTAACGACCTTTTTGAAGATTATTCCAATGCTCTTCGTCCAGTAGAGGATACAGATAAA
GTCCTGAATGTCACGCTCCAGATTACACTTTCTCAGATTAAGGATATGGATGAAAGAAACCAAA
TTCTGACTGCCTATTTATGGATCCGCCAAATCTGGCATGACGCATATCTCACGTGGGATAGAGA
CATGTATGATGGACTGGACTCCATCAGGATCCCCAGCGACCTGGTGTGGAGGCCGGATATTGTC
CTGTATAACAAGGCTGATGATGACTCTTCTGAGCCTGTGAACACCAATGTGGTCCTGCGGTATG
ATGGGCTGATCACCTGGGACGCACCAGCCATCACCAAAAGCTCCTGTGTGGTGGATGTCACCTA
CTTCCCCTTTGATCATCAGCAGTGCAACCTGACCTTTGGTTCCTGGACCTACAATGGCAATCAG
GTGGACATATTCAATGCCCTGGACAGCGGAGACCTCTCGGACTTCATCGAGGATGTGGAGTGGG
AGGTCCACGGGATGCCTGCTGTGAAGAACGTGATCTCCTACTGCTGCTGCTCTGAGCCTTACCC
GGACGTGACATTCACTCTCCTTCTGAAGAGGAGGTCCTCTTTCTATATCGTCAATCTTCTCATT
CCATGCGTGCTCATATCTTTTCTGGCTCCCTTGAGTTTTTATCTCCCAGCAGCTTCTGGAGAAA
AGGTCTCCCTGGGAGTGACCATCCTTTTGGCCATGACTGTATTTCAGCTCATGGTGGCAGAGAT
CATGCCGGCCTCAGAAAATGTCCCTCTGATAGGCAAATACTACATAGCCACAATGGCCTTGATC
ACCGCCTCCACCGCCTTGACCATCATGGTGATGAATATCCACTTCTGCGGGGCCGAGGCCCGGC
CAGTGCCACACTGGGCAAGGGTGGTCATCCTGAAATACATGTCCAGGCTCTTGTTTGTCTACGA
CGTGGGTGAGAGCTGCCTTGGCCCTCGCCACGACAGGGAGCGGGGCCGCCTCTCCAAGGTTTAT
GGCCAGCTTCCAGAGCCTGATCTGAAAACTGCCAGAAACAAAGACCTTCCCAGAAAGAAGGAAA
GGAACAAACTTGTAAAGAACGACTTGAGGTACCCGGGTGAGACTCTGCAGGATGCTGACAGCTA
CTGTGCACGGTATACAGTGTTGACGAGGAATATCGAATACATTGCCAAGTGCCTCAAAGACCAC
AAGGCCACCCATTCCAAGGGGAGTGAGTGGAAAAAGGTCGCAAAAGTCATAGACCGATTCTTCA
TGTGGGTTTTTTTCATTATGGTGTTTGTGATGACTATTTTGATCATAGCAAGAGCAGATTAAGT
AGCATTTGGTGTGTGGGGATAAATCAATAAAATTCCCTGTGATCTGTTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001231735	(Get FASTA)	NCBI Sequence Viewer
	XP_013834055	(Get FASTA)	NCBI Sequence Viewer
	XP_013834056	(Get FASTA)	NCBI Sequence Viewer
	XP_013834057	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000026083
	ENSSSCP00000026083.2
	ENSSSCP00005003803.1
	ENSSSCP00015017172.1
	ENSSSCP00025039323.1
	ENSSSCP00030014261.1
	ENSSSCP00035023463.1
	ENSSSCP00040015403.1
	ENSSSCP00045032461.1
	ENSSSCP00050013526.1
	ENSSSCP00055032274.1
	ENSSSCP00060013305.1
	ENSSSCP00065028699.1
	ENSSSCP00070034338.1

RefSeq Acc Id:	XP_013834056 ⟸ XM_013978602
- Peptide Label:	isoform X2
- UniProtKB:	I3LPQ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDERNQILTAYLWIRQIWHDAYLTWDRDMYDGLDSIRIPSDLVWRPDIVLYNKADDDSSEPVNT NVVLRYDGLITWDAPAITKSSCVVDVTYFPFDHQQCNLTFGSWTYNGNQVDIFNALDSGDLSDF IEDVEWEVHGMPAVKNVISYCCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYL PAASGEKVSLGVTILLAMTVFQLMVAEIMPASENVPLIGKYYIATMALITASTALTIMVMNIHF CGAEARPVPHWARVVILKYMSRLLFVYDVGESCLGPRHDRERGRLSKVYGQLPEPDLKTARNKD LPRKKERNKLVKNDLRYPGETLQDADSYCARYTVLTRNIEYIAKCLKDHKATHSKGSEWKKVAK VIDRFFMWVFFIMVFVMTILIIARAD hide sequence

RefSeq Acc Id:	XP_013834057 ⟸ XM_013978603
- Peptide Label:	isoform X2
- UniProtKB:	I3LPQ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDERNQILTAYLWIRQIWHDAYLTWDRDMYDGLDSIRIPSDLVWRPDIVLYNKADDDSSEPVNT NVVLRYDGLITWDAPAITKSSCVVDVTYFPFDHQQCNLTFGSWTYNGNQVDIFNALDSGDLSDF IEDVEWEVHGMPAVKNVISYCCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYL PAASGEKVSLGVTILLAMTVFQLMVAEIMPASENVPLIGKYYIATMALITASTALTIMVMNIHF CGAEARPVPHWARVVILKYMSRLLFVYDVGESCLGPRHDRERGRLSKVYGQLPEPDLKTARNKD LPRKKERNKLVKNDLRYPGETLQDADSYCARYTVLTRNIEYIAKCLKDHKATHSKGSEWKKVAK VIDRFFMWVFFIMVFVMTILIIARAD hide sequence

RefSeq Acc Id:	XP_013834055 ⟸ XM_013978601
- Peptide Label:	isoform X1
- UniProtKB:	I3LPQ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNWPHSCISFCWIYFAASRLGAAVDTADGKYAQKLFNDLFEDYSNALRPVEDTDKVLNVTLQIT LSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDMYDGLDSIRIPSDLVWRPDIVLYNKADDDS SEPVNTNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDHQQCNLTFGSWTYNGNQVDIFNALDS GDLSDFIEDVEWEVHGMPAVKNVISYCCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLA PLSFYLPAASGEKVSLGVTILLAMTVFQLMVAEIMPASENVPLIGKYYIATMALITASTALTIM VMNIHFCGAEARPVPHWARVVILKYMSRLLFVYDVGESCLGPRHDRERGRLSKVYGQLPEPDLK TARNKDLPRKKERNKLVKNDLRYPGETLQDADSYCARYTVLTRNIEYIAKCLKDHKATHSKGSE WKKVAKVIDRFFMWVFFIMVFVMTILIIARAD hide sequence

RefSeq Acc Id:	NP_001231735 ⟸ NM_001244806
- Peptide Label:	precursor
- UniProtKB:	A0A4X1UYD6 (UniProtKB/TrEMBL), A0A8D1Z414 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNWPHSCISFCWIYFAASRLGAVDTANGKYAQKLFNDLFEDYSNALRPVEDTDKVLNVTLQITL SQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDMYDGLDSIRIPSDLVWRPDIVLYNKADDDSS EPVNTNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDHQQCNLTFGSWTYNGNQVDIFNALDSG DLSDFIEDVEWEVHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAP LSFYLPAASGEKVSLGVTILLAMTVFQLMVAEIMPASENVPLIGKYYIATMALITASTALTIMV MNIHFCGAEARPVPHWARVVILKYMSGLLFVYDVGESCLGPRHDRERGRLSKVYGQLPEPDLKT ARNKDLPRKKERNKLVKNDLRYPGETLQDADSYCARYTVLTRNIEYIAKCLKDHKATHSKGSEW KKVAKVIDRFFMWVFFIMVFVMTILIIARAD hide sequence

Ensembl Acc Id:

ENSSSCP00000026083 ⟸ ENSSSCT00000032423

Protein Domains

Neurotransmitter-gated ion-channel ligand-binding Neurotransmitter-gated ion-channel transmembrane

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000024428	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005004388	UniProtKB/TrEMBL
	ENSSSCG00015032832	UniProtKB/TrEMBL
	ENSSSCG00025065456	UniProtKB/TrEMBL
	ENSSSCG00030022864	UniProtKB/TrEMBL
	ENSSSCG00035043934	UniProtKB/TrEMBL
	ENSSSCG00040027672	UniProtKB/TrEMBL
	ENSSSCG00045027467	UniProtKB/TrEMBL
	ENSSSCG00050024073	UniProtKB/TrEMBL
	ENSSSCG00055020678	UniProtKB/TrEMBL
	ENSSSCG00060022840	UniProtKB/TrEMBL
	ENSSSCG00065048417	UniProtKB/TrEMBL
	ENSSSCG00070020580	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000032423	ENTREZGENE
	ENSSSCT00000032423.2	UniProtKB/TrEMBL
	ENSSSCT00005006549.1	UniProtKB/TrEMBL
	ENSSSCT00015043472.1	UniProtKB/TrEMBL
	ENSSSCT00025089827.1	UniProtKB/TrEMBL
	ENSSSCT00030031734.1	UniProtKB/TrEMBL
	ENSSSCT00035058374.1	UniProtKB/TrEMBL
	ENSSSCT00040037052.1	UniProtKB/TrEMBL
	ENSSSCT00045046767.1	UniProtKB/TrEMBL
	ENSSSCT00050032439.1	UniProtKB/TrEMBL
	ENSSSCT00055040554.1	UniProtKB/TrEMBL
	ENSSSCT00060031001.1	UniProtKB/TrEMBL
	ENSSSCT00065066226.1	UniProtKB/TrEMBL
	ENSSSCT00070040913.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.390	UniProtKB/TrEMBL
	2.70.170.10	UniProtKB/TrEMBL
InterPro	Neur_chan_lig-bd	UniProtKB/TrEMBL
	Neur_chan_lig-bd_sf	UniProtKB/TrEMBL
	Neur_channel	UniProtKB/TrEMBL
	Neuro-gated_channel_TM_sf	UniProtKB/TrEMBL
	Neuro_actylchol_rec	UniProtKB/TrEMBL
	Neurotrans-gated_channel_TM	UniProtKB/TrEMBL
	Neurotransmitter_ion_chnl_CS	UniProtKB/TrEMBL
	Nicotinic_acetylcholine_rcpt	UniProtKB/TrEMBL
NCBI Gene	CHRNA9	ENTREZGENE
PANTHER	NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-9	UniProtKB/TrEMBL
	PTHR18945	UniProtKB/TrEMBL
Pfam	Neur_chan_LBD	UniProtKB/TrEMBL
	Neur_chan_memb	UniProtKB/TrEMBL
PRINTS	NICOTINICR	UniProtKB/TrEMBL
	NRIONCHANNEL	UniProtKB/TrEMBL
PROSITE	NEUROTR_ION_CHANNEL	UniProtKB/TrEMBL
Superfamily-SCOP	SSF63712	UniProtKB/TrEMBL
	SSF90112	UniProtKB/TrEMBL
UniProt	A0A4X1UYD6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0NHA3_PIG	UniProtKB/TrEMBL
	A0A8D1LTR7_PIG	UniProtKB/TrEMBL
	A0A8D1Z414	ENTREZGENE, UniProtKB/TrEMBL
	I3LPQ6	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:86671	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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