Pex12 (peroxisomal biogenesis factor 12) - Rat Genome Database

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Gene: Pex12 (peroxisomal biogenesis factor 12) Mus musculus
Analyze
Symbol: Pex12
Name: peroxisomal biogenesis factor 12
RGD ID: 731688
MGI Page MGI
Description: Predicted to enable ubiquitin ligase activator activity; ubiquitin-protein transferase activity; and zinc ion binding activity. Predicted to be involved in cellular response to reactive oxygen species; protein import into peroxisome matrix, receptor recycling; and protein ubiquitination. Predicted to be located in peroxisome. Predicted to be part of peroxisomal importomer complex. Predicted to be active in peroxisomal membrane. Is expressed in esophagus; lung; mandible; and maxilla. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 3A and peroxisome biogenesis disorder 3B. Orthologous to human PEX12 (peroxisomal biogenesis factor 12).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI451906; OTTMUSCASG00059419; OTTMUSPWKG00059404; peroxin-12; peroxisome assembly protein 12
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,182,757 - 83,189,849 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,185,468 - 83,193,412 (-)EnsemblGRCm39 Ensembl
GRCm381183,295,072 - 83,299,005 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,294,642 - 83,302,586 (-)EnsemblGRCm38mm10GRCm38
MGSCv371183,108,147 - 83,112,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,110,840 - 83,115,172 (-)NCBIMGSCv36mm8
Celera1192,886,804 - 92,891,135 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1150.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. PEX12, the pathogenic gene of group III Zellweger syndrome: cDNA cloning by functional complementation on a CHO cell mutant, patient analysis, and characterization of PEX12p. Okumoto K, etal., Mol Cell Biol 1998 Jul;18(7):4324-36.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693  
PMID:19619625   PMID:21267068   PMID:21677750   PMID:21873635   PMID:32968282  


Genomics

Comparative Map Data
Pex12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,182,757 - 83,189,849 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,185,468 - 83,193,412 (-)EnsemblGRCm39 Ensembl
GRCm381183,295,072 - 83,299,005 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,294,642 - 83,302,586 (-)EnsemblGRCm38mm10GRCm38
MGSCv371183,108,147 - 83,112,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,110,840 - 83,115,172 (-)NCBIMGSCv36mm8
Celera1192,886,804 - 92,891,135 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1150.3NCBI
PEX12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381735,574,795 - 35,578,571 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1735,574,795 - 35,578,863 (-)EnsemblGRCh38hg38GRCh38
GRCh371733,901,814 - 33,905,590 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361730,925,928 - 30,929,687 (-)NCBINCBI36Build 36hg18NCBI36
Build 341730,925,927 - 30,929,687NCBI
Celera1730,811,949 - 30,815,791 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1730,086,798 - 30,090,636 (-)NCBIHuRef
CHM1_11733,966,472 - 33,970,314 (-)NCBICHM1_1
T2T-CHM13v2.01736,522,734 - 36,526,512 (-)NCBIT2T-CHM13v2.0
Pex12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81068,593,307 - 68,596,938 (-)NCBIGRCr8
mRatBN7.21068,095,776 - 68,103,812 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1068,095,776 - 68,099,428 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1072,715,803 - 72,719,433 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01072,221,190 - 72,224,820 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01067,685,234 - 67,688,864 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01070,512,785 - 70,516,494 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1070,512,790 - 70,516,421 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01070,146,617 - 70,150,248 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41071,378,818 - 71,382,448 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1067,038,385 - 67,042,015 (-)NCBICelera
Cytogenetic Map10q26NCBI
Pex12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495548110,057,494 - 10,063,935 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495548110,057,494 - 10,060,492 (-)NCBIChiLan1.0ChiLan1.0
PEX12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,898,300 - 28,902,961 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,777,263 - 30,781,925 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01721,216,181 - 21,221,107 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11721,510,296 - 21,514,310 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1721,510,286 - 21,514,310 (+)Ensemblpanpan1.1panPan2
PEX12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1938,083,895 - 38,088,192 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl938,084,285 - 38,087,011 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha937,308,233 - 37,312,231 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0938,895,855 - 38,899,853 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl938,895,826 - 38,899,846 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1937,679,858 - 37,683,856 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,964,168 - 37,968,166 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0938,051,615 - 38,055,613 (+)NCBIUU_Cfam_GSD_1.0
Pex12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560237,069,927 - 37,073,042 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364901,527 - 5,069 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364901,751 - 5,094 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,932,010 - 39,936,268 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,931,680 - 39,936,632 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,443,455 - 41,447,645 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PEX12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11629,049,206 - 29,054,718 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666075922,468 - 926,100 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pex12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248753,082,505 - 3,085,540 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248753,081,581 - 3,085,441 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pex12
146 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1321
Count of miRNA genes:453
Interacting mature miRNAs:511
Transcripts:ENSMUST00000018877, ENSMUST00000108146, ENSMUST00000136369, ENSMUST00000153487, ENSMUST00000175741, ENSMUST00000176374, ENSMUST00000176518
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse

Markers in Region
UniSTS:236672  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381183,295,965 - 83,296,118UniSTSGRCm38
MGSCv371183,109,467 - 83,109,620UniSTSGRCm37
Celera1192,888,123 - 92,888,276UniSTS
Cytogenetic Map11CUniSTS
AI451906  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381183,295,276 - 83,295,371UniSTSGRCm38
MGSCv371183,108,778 - 83,108,873UniSTSGRCm37
Celera1192,887,435 - 92,887,530UniSTS
Cytogenetic Map11CUniSTS
Whitehead/MRC_RH111059.3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001364762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_134025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK035552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LT629148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LT629151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LT629154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000018877   ⟹   ENSMUSP00000018877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,185,468 - 83,189,803 (-)Ensembl
GRCm38.p6 Ensembl1183,294,642 - 83,298,977 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108146   ⟹   ENSMUSP00000103781
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,185,901 - 83,189,768 (-)Ensembl
GRCm38.p6 Ensembl1183,295,075 - 83,298,942 (-)Ensembl
Ensembl Acc Id: ENSMUST00000136369   ⟹   ENSMUSP00000118829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,189,155 - 83,189,784 (-)Ensembl
GRCm38.p6 Ensembl1183,298,329 - 83,298,958 (-)Ensembl
Ensembl Acc Id: ENSMUST00000153487
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,188,730 - 83,189,764 (-)Ensembl
GRCm38.p6 Ensembl1183,297,904 - 83,298,938 (-)Ensembl
Ensembl Acc Id: ENSMUST00000175741   ⟹   ENSMUSP00000135145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,185,901 - 83,189,721 (-)Ensembl
GRCm38.p6 Ensembl1183,295,075 - 83,298,895 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176374   ⟹   ENSMUSP00000134965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,188,856 - 83,193,412 (-)Ensembl
GRCm38.p6 Ensembl1183,298,030 - 83,302,586 (-)Ensembl
Ensembl Acc Id: ENSMUST00000176518   ⟹   ENSMUSP00000135632
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,185,902 - 83,189,723 (-)Ensembl
GRCm38.p6 Ensembl1183,295,076 - 83,298,897 (-)Ensembl
RefSeq Acc Id: NM_001364762   ⟹   NP_001351691
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,185,901 - 83,189,803 (-)NCBI
GRCm381183,295,075 - 83,298,977 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001364763   ⟹   NP_001351692
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,185,901 - 83,189,803 (-)NCBI
GRCm381183,295,075 - 83,298,977 (-)NCBI
Sequence:
RefSeq Acc Id: NM_134025   ⟹   NP_598786
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,185,901 - 83,189,803 (-)NCBI
GRCm381183,295,075 - 83,298,977 (-)NCBI
MGSCv371183,108,147 - 83,112,479 (-)RGD
Celera1192,886,804 - 92,891,135 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030245452   ⟹   XP_030101312
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,182,757 - 83,189,744 (-)NCBI
GRCm381183,295,072 - 83,298,920 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245453   ⟹   XP_030101313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,182,757 - 83,189,782 (-)NCBI
GRCm381183,295,072 - 83,298,931 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245454   ⟹   XP_030101314
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,182,757 - 83,189,849 (-)NCBI
GRCm381183,295,072 - 83,299,005 (-)NCBI
Sequence:
RefSeq Acc Id: NP_598786   ⟸   NM_134025
- UniProtKB: Q8VC48 (UniProtKB/Swiss-Prot),   Q5SWQ8 (UniProtKB/TrEMBL),   Q3TLN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101314   ⟸   XM_030245454
- Peptide Label: isoform X1
- UniProtKB: Q8VC48 (UniProtKB/Swiss-Prot),   Q5SWQ8 (UniProtKB/TrEMBL),   Q3TLN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101313   ⟸   XM_030245453
- Peptide Label: isoform X1
- UniProtKB: Q8VC48 (UniProtKB/Swiss-Prot),   Q5SWQ8 (UniProtKB/TrEMBL),   Q3TLN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101312   ⟸   XM_030245452
- Peptide Label: isoform X1
- UniProtKB: Q8VC48 (UniProtKB/Swiss-Prot),   Q5SWQ8 (UniProtKB/TrEMBL),   Q3TLN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001351692   ⟸   NM_001364763
- UniProtKB: Q8VC48 (UniProtKB/Swiss-Prot),   Q5SWQ8 (UniProtKB/TrEMBL),   Q3TLN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001351691   ⟸   NM_001364762
- UniProtKB: Q8VC48 (UniProtKB/Swiss-Prot),   Q5SWQ8 (UniProtKB/TrEMBL),   Q3TLN1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000103781   ⟸   ENSMUST00000108146
Ensembl Acc Id: ENSMUSP00000134965   ⟸   ENSMUST00000176374
Ensembl Acc Id: ENSMUSP00000135632   ⟸   ENSMUST00000176518
Ensembl Acc Id: ENSMUSP00000118829   ⟸   ENSMUST00000136369
Ensembl Acc Id: ENSMUSP00000018877   ⟸   ENSMUST00000018877
Ensembl Acc Id: ENSMUSP00000135145   ⟸   ENSMUST00000175741
Protein Domains
Pex N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VC48-F1-model_v2 AlphaFold Q8VC48 1-359 view protein structure

Promoters
RGD ID:6821531
Promoter ID:MM_KWN:8888
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_134025,   OTTMUST00000001775,   OTTMUST00000001776,   UC007KON.1,   UC007KOO.1,   UC007KOP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361183,111,921 - 83,112,632 (-)MPROMDB
RGD ID:8675890
Promoter ID:EPDNEW_M15976
Type:multiple initiation site
Name:Pex12_1
Description:Mus musculus peroxisomal biogenesis factor 12 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381183,298,897 - 83,298,957EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2144177 AgrOrtholog
Ensembl Genes ENSMUSG00000018733 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000018877 ENTREZGENE
  ENSMUST00000018877.9 UniProtKB/Swiss-Prot
  ENSMUST00000108146 ENTREZGENE
  ENSMUST00000108146.8 UniProtKB/Swiss-Prot
  ENSMUST00000136369.2 UniProtKB/TrEMBL
  ENSMUST00000175741 ENTREZGENE
  ENSMUST00000175741.8 UniProtKB/Swiss-Prot
  ENSMUST00000176374.2 UniProtKB/TrEMBL
  ENSMUST00000176518.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PEX12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pex_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:103737 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2144177 ENTREZGENE
NCBI Gene 103737 ENTREZGENE
PANTHER PEROXISOME ASSEMBLY PROTEIN 12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12888 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pex2_Pex12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pex12 PhenoGen
PIRSF Peroxisome_assembly_p12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt H3BJF5_MOUSE UniProtKB/TrEMBL
  PEX12_MOUSE UniProtKB/Swiss-Prot
  Q3TLN1 ENTREZGENE, UniProtKB/TrEMBL
  Q5SWQ8 ENTREZGENE, UniProtKB/TrEMBL
  Q5SWQ9_MOUSE UniProtKB/TrEMBL
  Q8VC48 ENTREZGENE