Pex12 (peroxisomal biogenesis factor 12) - Rat Genome Database

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Gene: Pex12 (peroxisomal biogenesis factor 12) Ictidomys tridecemlineatus
Analyze
Symbol: Pex12
Name: peroxisomal biogenesis factor 12
RGD ID: 12467487
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN peroxisome organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); peroxisomal biogenesis disorder (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peroxisomal biogenesis factor 12, transcript variant X1; peroxisomal biogenesis factor 12, transcript variant X2; peroxisome assembly protein 12
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560237,069,927 - 37,073,042 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364901,527 - 5,069 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364901,751 - 5,094 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pex12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560237,069,927 - 37,073,042 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364901,527 - 5,069 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364901,751 - 5,094 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381735,574,795 - 35,578,571 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1735,574,795 - 35,578,863 (-)EnsemblGRCh38hg38GRCh38
GRCh371733,901,814 - 33,905,590 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361730,925,928 - 30,929,687 (-)NCBINCBI36Build 36hg18NCBI36
Build 341730,925,927 - 30,929,687NCBI
Celera1730,811,949 - 30,815,791 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1730,086,798 - 30,090,636 (-)NCBIHuRef
CHM1_11733,966,472 - 33,970,314 (-)NCBICHM1_1
T2T-CHM13v2.01736,522,734 - 36,526,512 (-)NCBIT2T-CHM13v2.0
Pex12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,182,757 - 83,189,849 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,185,468 - 83,193,412 (-)EnsemblGRCm39 Ensembl
GRCm381183,295,072 - 83,299,005 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,294,642 - 83,302,586 (-)EnsemblGRCm38mm10GRCm38
MGSCv371183,108,147 - 83,112,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,110,840 - 83,115,172 (-)NCBIMGSCv36mm8
Celera1192,886,804 - 92,891,135 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1150.3NCBI
Pex12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81068,593,307 - 68,596,938 (-)NCBIGRCr8
mRatBN7.21068,095,776 - 68,103,812 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1068,095,776 - 68,099,428 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1072,715,803 - 72,719,433 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01072,221,190 - 72,224,820 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01067,685,234 - 67,688,864 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01070,512,785 - 70,516,494 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1070,512,790 - 70,516,421 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01070,146,617 - 70,150,248 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41071,378,818 - 71,382,448 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1067,038,385 - 67,042,015 (-)NCBICelera
Cytogenetic Map10q26NCBI
Pex12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495548110,057,494 - 10,063,935 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495548110,057,494 - 10,060,492 (-)NCBIChiLan1.0ChiLan1.0
PEX12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,898,300 - 28,902,961 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,777,263 - 30,781,925 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01721,216,181 - 21,221,107 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11721,510,296 - 21,514,310 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1721,510,286 - 21,514,310 (+)Ensemblpanpan1.1panPan2
PEX12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1938,083,895 - 38,088,192 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl938,084,285 - 38,087,011 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha937,308,233 - 37,312,231 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0938,895,855 - 38,899,853 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl938,895,826 - 38,899,846 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1937,679,858 - 37,683,856 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,964,168 - 37,968,166 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0938,051,615 - 38,055,613 (+)NCBIUU_Cfam_GSD_1.0
PEX12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,932,010 - 39,936,268 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,931,680 - 39,936,632 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,443,455 - 41,447,645 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PEX12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11629,049,206 - 29,054,718 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666075922,468 - 926,100 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pex12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248753,082,505 - 3,085,540 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248753,081,581 - 3,085,441 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000019442   ⟹   ENSSTOP00000018686
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364901,527 - 5,069 (-)Ensembl
RefSeq Acc Id: XM_013356988   ⟹   XP_013212442
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560237,069,927 - 37,073,042 (+)NCBI
SpeTri2.0NW_0049364901,751 - 5,094 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021724029   ⟹   XP_021579704
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560237,069,956 - 37,073,042 (+)NCBI
SpeTri2.0NW_0049364901,751 - 5,094 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013212442 (Get FASTA)   NCBI Sequence Viewer  
  XP_021579704 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018686.1
GenBank Protein KAG3269485 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269486 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013212442   ⟸   XM_013356988
- UniProtKB: I3N2U0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579704   ⟸   XM_021724029
- UniProtKB: I3N2U0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000018686   ⟸   ENSSTOT00000019442
Protein Domains
Pex N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025573 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000019442.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro PEX12 UniProtKB/TrEMBL
  Pex_N UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Pex12 ENTREZGENE
PANTHER PEROXISOME ASSEMBLY PROTEIN 12 UniProtKB/TrEMBL
  PTHR12888 UniProtKB/TrEMBL
Pfam Pex2_Pex12 UniProtKB/TrEMBL
PIRSF Peroxisome_assembly_p12 UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt I3N2U0 ENTREZGENE, UniProtKB/TrEMBL