Slc15a1 (solute carrier family 15 (oligopeptide transporter), member 1) - Rat Genome Database

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Gene: Slc15a1 (solute carrier family 15 (oligopeptide transporter), member 1) Mus musculus
Analyze
Symbol: Slc15a1
Name: solute carrier family 15 (oligopeptide transporter), member 1
RGD ID: 730869
MGI Page MGI
Description: Enables dipeptide transmembrane transporter activity; peptide:proton symporter activity; and proton-dependent oligopeptide secondary active transmembrane transporter activity. Involved in dipeptide import across plasma membrane. Acts upstream of or within oligopeptide transport. Located in brush border and membrane. Orthologous to human SLC15A1 (solute carrier family 15 member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: D630032F02; intestinal H(+)/peptide cotransporter; intestinal peptide transporter PEPT1; oligopeptide transporter, small intestine isoform; PECT; PECT1; PEP; PEPT1; peptide transporter 1; proton-coupled dipeptide cotransporter; solute carrier family 15 member 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914121,697,033 - 121,742,666 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14121,697,033 - 121,742,664 (-)EnsemblGRCm39 Ensembl
GRCm3814121,459,621 - 121,505,254 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14121,459,621 - 121,505,252 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714121,858,843 - 121,904,476 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614120,594,799 - 120,640,433 (-)NCBIMGSCv36mm8
Celera14120,015,509 - 120,060,682 (-)NCBICelera
Cytogenetic Map14E5NCBI
cM Map1465.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
AICA ribonucleotide  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
aspartame  (ISO)
azathioprine  (ISO)
Azoxymethane  (EXP)
benazepril  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
benzoic acid  (ISO)
bisphenol A  (EXP,ISO)
calcitriol  (ISO)
cefixime  (EXP)
ceftibuten  (ISO)
cephalexin  (ISO)
cephradine  (ISO)
chromium(6+)  (EXP)
cilazapril monohydrate  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dichlorine  (ISO)
EC 3.4.15.1 (peptidyl-dipeptidase A) inhibitor  (ISO)
endosulfan  (ISO)
ethanol  (ISO)
flutamide  (ISO)
fluvastatin  (ISO)
fonofos  (ISO)
fosinopril  (ISO)
furan  (ISO)
glycylsarcosine  (ISO)
ibuprofen  (ISO)
isotretinoin  (ISO)
MeIQx  (ISO)
mercury dichloride  (EXP)
metformin  (EXP,ISO)
methapyrilene  (ISO)
methylmercury chloride  (EXP)
Moexipril  (ISO)
N-Nitrosopyrrolidine  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (ISO)
parathion  (ISO)
pentane-2,3-dione  (ISO)
perindopril  (ISO)
Phe-Ser  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
quinapril hydrochloride  (ISO)
quinaprilat  (ISO)
rac-lactic acid  (ISO)
ramipril  (ISO)
Repaglinide  (ISO)
resveratrol  (ISO)
rifampicin  (ISO)
sirolimus  (ISO)
sodium hydrogencarbonate  (ISO)
spirapril  (ISO)
terbufos  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trandolapril  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
apical plasma membrane  (IBA,IEA,ISO)
brush border  (IDA)
membrane  (IDA)
plasma membrane  (IBA,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11004485   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14681479   PMID:16141072   PMID:16141073   PMID:16202478   PMID:16328452   PMID:17932227  
PMID:18322073   PMID:18668438   PMID:19144638   PMID:19434858   PMID:19549526   PMID:20430876   PMID:20862774   PMID:20884889   PMID:21267068   PMID:21350187   PMID:21677750   PMID:21873635  
PMID:21904935   PMID:22031831   PMID:22114352   PMID:22842481   PMID:23264448   PMID:23494121   PMID:23660505   PMID:23676500   PMID:23797361   PMID:23924683   PMID:23934551   PMID:23959853  
PMID:24045836   PMID:24583477   PMID:24695226   PMID:25016014   PMID:25148225   PMID:25931122   PMID:26320580   PMID:26444978   PMID:26979860   PMID:27250880   PMID:27458604   PMID:27553280  
PMID:28031405   PMID:28336547   PMID:29935147   PMID:29997285   PMID:32694535   PMID:33759563   PMID:37196079  


Genomics

Comparative Map Data
Slc15a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914121,697,033 - 121,742,666 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14121,697,033 - 121,742,664 (-)EnsemblGRCm39 Ensembl
GRCm3814121,459,621 - 121,505,254 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14121,459,621 - 121,505,252 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714121,858,843 - 121,904,476 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614120,594,799 - 120,640,433 (-)NCBIMGSCv36mm8
Celera14120,015,509 - 120,060,682 (-)NCBICelera
Cytogenetic Map14E5NCBI
cM Map1465.26NCBI
SLC15A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381398,683,801 - 98,752,672 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1398,683,801 - 98,752,672 (-)EnsemblGRCh38hg38GRCh38
GRCh371399,336,055 - 99,404,926 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361398,134,057 - 98,202,909 (-)NCBINCBI36Build 36hg18NCBI36
Build 341398,134,056 - 98,202,909NCBI
Celera1380,179,729 - 80,248,593 (-)NCBICelera
Cytogenetic Map13q32.2-q32.3NCBI
HuRef1379,930,271 - 79,998,840 (-)NCBIHuRef
CHM1_11399,305,811 - 99,374,685 (-)NCBICHM1_1
T2T-CHM13v2.01397,893,752 - 97,962,601 (-)NCBIT2T-CHM13v2.0
Slc15a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815104,944,461 - 104,991,316 (-)NCBIGRCr8
mRatBN7.21598,537,641 - 98,582,544 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1598,537,641 - 98,582,545 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx15102,471,246 - 102,515,756 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.015103,572,123 - 103,616,870 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.015100,499,818 - 100,544,563 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.015106,800,081 - 106,844,668 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15106,800,081 - 106,844,426 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015110,194,618 - 110,238,806 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415106,549,586 - 106,592,594 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.115106,565,875 - 106,608,374 (-)NCBI
Celera1597,321,467 - 97,366,085 (-)NCBICelera
Cytogenetic Map15q24NCBI
Slc15a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540411,798,927 - 11,857,982 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540411,799,370 - 11,856,854 (+)NCBIChiLan1.0ChiLan1.0
SLC15A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214100,208,416 - 100,280,255 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11398,879,618 - 98,947,314 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01379,855,805 - 79,902,215 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11398,998,769 - 99,040,646 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1398,998,894 - 99,065,008 (-)Ensemblpanpan1.1panPan2
SLC15A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12248,777,627 - 48,827,533 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2248,777,630 - 48,827,533 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2248,560,003 - 48,609,797 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02249,220,704 - 49,270,801 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2249,220,707 - 49,270,801 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12248,870,251 - 48,919,979 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02248,905,695 - 48,955,899 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02248,941,445 - 48,991,309 (-)NCBIUU_Cfam_GSD_1.0
Slc15a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945184,235,002 - 184,283,235 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647211,669,206 - 11,716,303 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647211,669,206 - 11,716,303 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC15A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1167,652,193 - 67,710,933 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11167,652,808 - 67,690,457 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21174,889,779 - 74,924,577 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC15A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1377,344,653 - 77,413,475 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl377,345,567 - 77,383,715 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604633,834,919 - 33,873,568 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc15a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479312,348,819 - 12,394,497 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479312,348,356 - 12,393,909 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc15a1
1847 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:273
Count of miRNA genes:212
Interacting mature miRNAs:222
Transcripts:ENSMUST00000088386
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12792981Fbmd5_mfemoral bone mineral density 5, females only (mouse)1499838217125033054Mouse
10755523Hgb2_mhemoglobin 2 (mouse)14105884654125139656Mouse

Markers in Region
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000088386   ⟹   ENSMUSP00000085728
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14121,697,033 - 121,742,664 (-)Ensembl
GRCm38.p6 Ensembl14121,459,621 - 121,505,252 (-)Ensembl
Ensembl Acc Id: ENSMUST00000227372
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14121,708,068 - 121,729,881 (-)Ensembl
GRCm38.p6 Ensembl14121,470,656 - 121,492,469 (-)Ensembl
RefSeq Acc Id: NM_053079   ⟹   NP_444309
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914121,697,033 - 121,742,666 (-)NCBI
GRCm3814121,459,621 - 121,505,254 (-)ENTREZGENE
MGSCv3714121,858,843 - 121,904,476 (-)RGD
Celera14120,015,509 - 120,060,682 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_444309   ⟸   NM_053079
- UniProtKB: Q9JIP7 (UniProtKB/Swiss-Prot),   E9QMX3 (UniProtKB/Swiss-Prot),   Q14BA3 (UniProtKB/TrEMBL),   Q3UWE2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000085728   ⟸   ENSMUST00000088386

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JIP7-F1-model_v2 AlphaFold Q9JIP7 1-709 view protein structure

Promoters
RGD ID:8683244
Promoter ID:EPDNEW_M19653
Type:initiation region
Name:Slc15a1_1
Description:Mus musculus solute carrier family 15 , member 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3814121,505,254 - 121,505,314EPDNEW
RGD ID:6825420
Promoter ID:MM_KWN:17842
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Lung
Transcripts:NM_053079
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3614121,904,036 - 121,904,536 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1861376 AgrOrtholog
Ensembl Genes ENSMUSG00000025557 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000088386 ENTREZGENE
  ENSMUST00000088386.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Oligopep_transport UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POT_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTR2_symporter_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56643 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1861376 ENTREZGENE
NCBI Gene 56643 ENTREZGENE
PANTHER PTHR11654 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PTR2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc15a1 PhenoGen
PROSITE PTR2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTR2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9QMX3 ENTREZGENE
  Q14BA3 ENTREZGENE, UniProtKB/TrEMBL
  Q3UWE2 ENTREZGENE, UniProtKB/TrEMBL
  Q9JIP7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary E9QMX3 UniProtKB/Swiss-Prot