SLC15A1 (solute carrier family 15 member 1) - Rat Genome Database

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Gene: SLC15A1 (solute carrier family 15 member 1) Sus scrofa
Analyze
Symbol: SLC15A1
Name: solute carrier family 15 member 1
RGD ID: 14083577
Description: ENCODES a protein that exhibits channel inhibitor activity (ortholog); INVOLVED IN negative regulation of amino acid transport (ortholog); oligopeptide transport (ortholog); FOUND IN apical plasma membrane (ortholog); membrane (ortholog); plasma membrane (ortholog); INTERACTS WITH bisphenol A; choline; cyanocob(III)alamin
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: peptide transporter 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1167,652,193 - 67,710,933 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11167,652,808 - 67,690,457 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21174,889,779 - 74,924,577 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:15583057   PMID:17145712   PMID:18836683  


Genomics

Comparative Map Data
SLC15A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1167,652,193 - 67,710,933 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11167,652,808 - 67,690,457 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21174,889,779 - 74,924,577 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC15A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1398,683,801 - 98,752,672 (-)EnsemblGRCh38hg38GRCh38
GRCh381398,683,801 - 98,752,672 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371399,336,055 - 99,404,926 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361398,134,057 - 98,202,909 (-)NCBINCBI36hg18NCBI36
Build 341398,134,056 - 98,202,909NCBI
Celera1380,179,729 - 80,248,593 (-)NCBI
Cytogenetic Map13q32.2-q32.3NCBI
HuRef1379,930,271 - 79,998,840 (-)NCBIHuRef
CHM1_11399,305,811 - 99,374,685 (-)NCBICHM1_1
Slc15a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914121,697,033 - 121,742,666 (-)NCBIGRCm39mm39
GRCm39 Ensembl14121,697,033 - 121,742,664 (-)Ensembl
GRCm3814121,459,621 - 121,505,254 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14121,459,621 - 121,505,252 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714121,858,843 - 121,904,476 (-)NCBIGRCm37mm9NCBIm37
MGSCv3614120,594,799 - 120,640,433 (-)NCBImm8
Celera14120,015,509 - 120,060,682 (-)NCBICelera
Cytogenetic Map14E5NCBI
Slc15a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21598,537,641 - 98,582,544 (-)NCBI
Rnor_6.0 Ensembl15106,800,081 - 106,844,426 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.015106,800,081 - 106,844,668 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015110,194,618 - 110,238,806 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415106,549,586 - 106,592,594 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115106,565,875 - 106,608,374 (-)NCBI
Celera1597,321,467 - 97,366,085 (-)NCBICelera
Cytogenetic Map15q24NCBI
Slc15a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540411,798,927 - 11,857,982 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540411,799,370 - 11,856,854 (+)NCBIChiLan1.0ChiLan1.0
SLC15A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11398,998,769 - 99,040,646 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1398,998,894 - 99,065,008 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01379,855,805 - 79,902,215 (-)NCBIMhudiblu_PPA_v0panPan3
SLC15A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12248,777,627 - 48,827,533 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2248,777,630 - 48,827,533 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2248,560,003 - 48,609,797 (-)NCBI
ROS_Cfam_1.02249,220,704 - 49,270,801 (-)NCBI
UMICH_Zoey_3.12248,870,251 - 48,919,979 (-)NCBI
UNSW_CanFamBas_1.02248,905,695 - 48,955,899 (-)NCBI
UU_Cfam_GSD_1.02248,941,445 - 48,991,309 (-)NCBI
Slc15a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945184,235,002 - 184,283,235 (-)NCBI
SpeTri2.0NW_00493647211,669,206 - 11,716,303 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC15A1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1377,344,653 - 77,413,475 (-)NCBI
ChlSab1.1 Ensembl377,345,567 - 77,383,715 (-)Ensembl
Vero_WHO_p1.0NW_02366604633,834,919 - 33,873,568 (-)NCBI
Slc15a1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479312,348,356 - 12,393,909 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system musculoskeletal system nervous system renal system reproductive system
High
Medium 5
Low 3 3 1 1
Below cutoff 2 1 1 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000010430   ⟹   ENSSSCP00000010159
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1167,652,193 - 67,710,933 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000072524   ⟹   ENSSSCP00000060125
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1167,652,201 - 67,710,862 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000078480   ⟹   ENSSSCP00000071587
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1167,652,782 - 67,710,862 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000082286   ⟹   ENSSSCP00000063948
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1167,652,193 - 67,689,492 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000083482   ⟹   ENSSSCP00000067046
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1167,652,772 - 67,710,865 (-)Ensembl
RefSeq Acc Id: NM_214347   ⟹   NP_999512
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11167,652,808 - 67,690,457 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_999512 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAO43094 (Get FASTA)   NCBI Sequence Viewer  
  ABY90136 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_999512   ⟸   NM_214347
- UniProtKB: Q7YSA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000071587   ⟸   ENSSSCT00000078480
RefSeq Acc Id: ENSSSCP00000010159   ⟸   ENSSSCT00000010430
RefSeq Acc Id: ENSSSCP00000067046   ⟸   ENSSSCT00000083482
RefSeq Acc Id: ENSSSCP00000060125   ⟸   ENSSSCT00000072524
RefSeq Acc Id: ENSSSCP00000063948   ⟸   ENSSSCT00000082286


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009513 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000010159 UniProtKB/TrEMBL
  ENSSSCP00000060125 UniProtKB/TrEMBL
  ENSSSCP00000063948 UniProtKB/TrEMBL
  ENSSSCP00000067046 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000071587 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010430 UniProtKB/TrEMBL
  ENSSSCT00000072524 UniProtKB/TrEMBL
  ENSSSCT00000078480 UniProtKB/TrEMBL
  ENSSSCT00000082286 UniProtKB/TrEMBL
  ENSSSCT00000083482 ENTREZGENE, UniProtKB/TrEMBL
InterPro MFS_trans_sf UniProtKB/TrEMBL
  Oligopep_transport UniProtKB/TrEMBL
  POT_fam UniProtKB/TrEMBL
  PTR2_symporter_CS UniProtKB/TrEMBL
KEGG Report ssc:397624 UniProtKB/TrEMBL
NCBI Gene SLC15A1 ENTREZGENE
PANTHER PTHR11654 UniProtKB/TrEMBL
Pfam PTR2 UniProtKB/TrEMBL
PROSITE PTR2_1 UniProtKB/TrEMBL
  PTR2_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
TIGRFAMs 2A1704 UniProtKB/TrEMBL
UniProt A0A5G2QDJ4_PIG UniProtKB/TrEMBL
  A0A5G2QPD9_PIG UniProtKB/TrEMBL
  A0A5G2QQ75_PIG UniProtKB/TrEMBL
  A0A5G2R319_PIG UniProtKB/TrEMBL
  Q7YSA7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1RP40 UniProtKB/TrEMBL
VGNC ID VGNC:92934 ENTREZGENE