TUBBP9 (tubulin beta class I pseudogene 9) - Rat Genome Database

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Gene: TUBBP9 (tubulin beta class I pseudogene 9) Homo sapiens
Analyze
Symbol: TUBBP9
Name: tubulin beta class I pseudogene 9
RGD ID: 7207541
HGNC Page HGNC:42178
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: TUBB  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38639,992,663 - 40,000,269 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl639,992,815 - 40,000,233 (+)EnsemblGRCh38hg38GRCh38
GRCh37639,960,402 - 39,968,008 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36640,068,532 - 40,076,049 (+)NCBINCBI36Build 36hg18NCBI36
Celera641,513,786 - 41,521,175 (+)NCBICelera
Cytogenetic Map6p21.2NCBI
HuRef639,679,108 - 39,686,497 (+)NCBIHuRef
CHM1_1639,963,130 - 39,970,519 (+)NCBICHM1_1
T2T-CHM13v2.0639,819,991 - 39,827,597 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:174
Count of miRNA genes:166
Interacting mature miRNAs:174
Transcripts:ENST00000405234
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 4 1
Low 1 26 17 15 41 14 50 7 43 7 354 9 1 11 27
Below cutoff 479 972 532 218 224 159 1805 452 2531 116 310 516 59 500 1193 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000405234
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl639,992,815 - 40,000,233 (+)Ensembl
RefSeq Acc Id: ENST00000649703
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl639,934,595 - 40,000,527 (+)Ensembl
Protein Sequences
GenBank Protein EAX04003 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC TUBBP9 COSMIC
Ensembl Genes ENSG00000220586 Ensembl, ENTREZGENE
GTEx ENSG00000220586 GTEx
HGNC ID HGNC:42178 ENTREZGENE
Human Proteome Map TUBBP9 Human Proteome Map
NCBI Gene TUBBP9 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 TUBBP9  tubulin beta class I pseudogene 9    tubulin, beta class I pseudogene 9  Symbol and/or name change 5135510 APPROVED