Epb41l1 (erythrocyte membrane protein band 4.1-like 1) - Rat Genome Database

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Gene: Epb41l1 (erythrocyte membrane protein band 4.1-like 1) Rattus norvegicus
Analyze
Symbol: Epb41l1
Name: erythrocyte membrane protein band 4.1-like 1
RGD ID: 71087
Description: Enables signaling receptor binding activity. Predicted to be involved in actomyosin structure organization and regulation of exocytic insertion of neurotransmitter receptor to postsynaptic membrane. Located in synaptic membrane. Part of protein-containing complex. Is active in parallel fiber to Purkinje cell synapse; postsynapse; and presynapse. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 11. Orthologous to human EPB41L1 (erythrocyte membrane protein band 4.1 like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 4-[1-hydroxy-2-[4-(phenylmethyl)-1-piperidinyl]propyl]phenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4.1N; band 4.1-like protein 1; band 4.1-like protein 1-like; Epb4.1l1; erythrocyte protein band 4.1-like 1; LOC100911769; neuronal protein 4.1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83165,389,295 - 165,512,821 (+)NCBIGRCr8
mRatBN7.23144,929,195 - 145,052,723 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,984,640 - 145,052,721 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3148,850,623 - 148,918,207 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,467,747 - 157,535,463 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03155,207,141 - 155,274,268 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03152,492,725 - 152,622,047 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3152,552,822 - 152,619,722 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3153,843,206 - 153,893,847 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03159,071,718 - 159,177,204 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43146,876,451 - 146,944,603 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13146,782,359 - 146,850,512 (+)NCBI
Celera3143,705,696 - 143,771,313 (+)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-[1-hydroxy-2-[4-(phenylmethyl)-1-piperidinyl]propyl]phenol  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzene  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
cadmium atom  (ISO)
caffeine  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
Cuprizon  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dimethylselenide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
fonofos  (ISO)
FR900359  (ISO)
genistein  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
isoflurane  (EXP)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methylphenidate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (ISO)
ozone  (ISO)
p-toluidine  (EXP)
parathion  (ISO)
PCB138  (EXP)
perfluorononanoic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
reactive oxygen species  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sulforaphane  (ISO)
terbufos  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thimerosal  (ISO)
titanium dioxide  (ISO)
tributylstannane  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. D2 and D3 dopamine receptor cell surface localization mediated by interaction with protein 4.1N. Binda AV, etal., Mol Pharmacol 2002 Sep;62(3):507-13.
2. Differential neuronal and glial expression of GluR1 AMPA receptor subunit and the scaffolding proteins SAP97 and 4.1N during rat cerebellar development. Douyard J, etal., J Comp Neurol. 2007 May 1;502(1):141-56. doi: 10.1002/cne.21294.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Association of the type 1 inositol (1,4,5)-trisphosphate receptor with 4.1N protein in neurons. Maximov A, etal., Mol Cell Neurosci. 2003 Feb;22(2):271-83.
5. Gene Data Set MGD Curation, June 12, 2002
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Huntingtin and huntingtin-associated protein 1 influence neuronal calcium signaling mediated by inositol-(1,4,5) triphosphate receptor type 1. Tang TS, etal., Neuron. 2003 Jul 17;39(2):227-39.
12. Molecular characterization of a new member of the protein 4.1 family (brain 4.1) in rat brain. Yamakawa H, etal., Brain Res Mol Brain Res 1999 Jul 5;70(2):197-209.
Additional References at PubMed
PMID:12574408   PMID:14681019   PMID:15364918   PMID:16122796   PMID:16641100   PMID:17114649   PMID:19503082   PMID:21389686   PMID:23400781   PMID:25468996   PMID:29476059   PMID:30053369  


Genomics

Comparative Map Data
Epb41l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83165,389,295 - 165,512,821 (+)NCBIGRCr8
mRatBN7.23144,929,195 - 145,052,723 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,984,640 - 145,052,721 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3148,850,623 - 148,918,207 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,467,747 - 157,535,463 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03155,207,141 - 155,274,268 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03152,492,725 - 152,622,047 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3152,552,822 - 152,619,722 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3153,843,206 - 153,893,847 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03159,071,718 - 159,177,204 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43146,876,451 - 146,944,603 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13146,782,359 - 146,850,512 (+)NCBI
Celera3143,705,696 - 143,771,313 (+)NCBICelera
Cytogenetic Map3q42NCBI
EPB41L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382036,091,414 - 36,232,799 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2036,091,504 - 36,232,799 (+)EnsemblGRCh38hg38GRCh38
GRCh372034,679,336 - 34,820,721 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362034,163,762 - 34,284,135 (+)NCBINCBI36Build 36hg18NCBI36
Build 342034,206,075 - 34,284,135NCBI
Celera2031,449,112 - 31,569,493 (+)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2031,457,074 - 31,598,185 (+)NCBIHuRef
CHM1_12034,581,565 - 34,722,846 (+)NCBICHM1_1
T2T-CHM13v2.02037,812,399 - 37,953,498 (+)NCBIT2T-CHM13v2.0
Epb41l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392156,255,918 - 156,385,134 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2156,262,829 - 156,385,134 (+)EnsemblGRCm39 Ensembl
GRCm382156,417,595 - 156,543,214 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,420,909 - 156,543,214 (+)EnsemblGRCm38mm10GRCm38
MGSCv372156,246,788 - 156,368,950 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362156,112,493 - 156,234,655 (+)NCBIMGSCv36mm8
Celera2162,357,837 - 162,479,758 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.39NCBI
Epb41l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542225,336,888 - 25,440,893 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542225,338,135 - 25,456,376 (-)NCBIChiLan1.0ChiLan1.0
EPB41L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,889,539 - 41,967,290 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,820,622 - 41,960,391 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02032,422,455 - 32,562,208 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12033,543,378 - 33,680,496 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2033,575,519 - 33,680,496 (+)Ensemblpanpan1.1panPan2
EPB41L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,906,516 - 25,050,109 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2424,925,629 - 25,046,776 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2424,553,009 - 24,696,538 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02425,598,841 - 25,742,660 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2425,618,315 - 25,739,543 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12424,903,260 - 25,027,592 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,978,559 - 25,122,084 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02425,468,575 - 25,612,392 (+)NCBIUU_Cfam_GSD_1.0
Epb41l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,893,997 - 174,016,632 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365614,735,339 - 4,837,603 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365614,732,915 - 4,855,662 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPB41L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1739,326,627 - 39,495,061 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11739,360,388 - 39,495,064 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,823,051 - 44,900,443 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPB41L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,947,777 - 57,085,856 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,966,950 - 57,086,448 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660873,495,345 - 3,573,019 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epb41l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248423,265,880 - 3,459,412 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248423,265,880 - 3,443,535 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Epb41l1
891 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:46
Interacting mature miRNAs:49
Transcripts:ENSRNOT00000027151, ENSRNOT00000040206
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3140069424146976080Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat

Markers in Region
D3Got117  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23144,983,277 - 144,983,438 (+)MAPPERmRatBN7.2
Rnor_6.03152,551,448 - 152,551,608NCBIRnor6.0
Rnor_5.03159,140,777 - 159,140,937UniSTSRnor5.0
RGSC_v3.43146,875,157 - 146,875,318RGDRGSC3.4
RGSC_v3.43146,875,158 - 146,875,318UniSTSRGSC3.4
RGSC_v3.13146,781,067 - 146,781,227RGD
Celera3143,704,355 - 143,704,515UniSTS
RH 3.4 Map31333.8UniSTS
RH 3.4 Map31333.8RGD
RH 2.0 Map3893.6RGD
Cytogenetic Map3q42UniSTS
RH129967  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23145,052,511 - 145,052,719 (+)MAPPERmRatBN7.2
Rnor_6.03152,621,836 - 152,622,043NCBIRnor6.0
Rnor_5.03159,071,722 - 159,071,929UniSTSRnor5.0
RGSC_v3.43146,944,394 - 146,944,601UniSTSRGSC3.4
Celera3143,771,104 - 143,771,311UniSTS
RH 3.4 Map31328.3UniSTS
Cytogenetic Map3q42UniSTS
WI-22026  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23145,052,474 - 145,052,726 (+)MAPPERmRatBN7.2
Rnor_6.03152,621,799 - 152,622,050NCBIRnor6.0
Rnor_5.03159,071,715 - 159,071,966UniSTSRnor5.0
RGSC_v3.43146,944,357 - 146,944,608UniSTSRGSC3.4
Celera3143,771,067 - 143,771,318UniSTS
Cytogenetic Map3q42UniSTS
MARC_15779-15780:1017948347:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23145,042,610 - 145,043,660 (+)MAPPERmRatBN7.2
Rnor_6.03152,612,091 - 152,613,140NCBIRnor6.0
Rnor_5.03159,080,827 - 159,081,876UniSTSRnor5.0
RGSC_v3.43146,934,398 - 146,935,447UniSTSRGSC3.4
Celera3143,761,613 - 143,762,662UniSTS
Cytogenetic Map3q42UniSTS
EPB41L1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23145,045,896 - 145,046,374 (+)MAPPERmRatBN7.2
Rnor_6.03152,615,377 - 152,615,854NCBIRnor6.0
Rnor_5.03159,078,113 - 159,078,590UniSTSRnor5.0
RGSC_v3.43146,937,684 - 146,938,161UniSTSRGSC3.4
Celera3143,764,899 - 143,765,376UniSTS
Cytogenetic Map3q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 9 2 64 33 21 2
Low 3 39 53 41 18 41 8 11 31 3 22 9 8
Below cutoff 2 24 12 5 8 5 2 2 34 24 27 11 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_021681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB019256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB019257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000080543   ⟹   ENSRNOP00000071845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,984,640 - 145,047,040 (+)Ensembl
Rnor_6.0 Ensembl3152,571,121 - 152,615,920 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083476   ⟹   ENSRNOP00000071547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,984,640 - 145,052,721 (+)Ensembl
Rnor_6.0 Ensembl3152,571,121 - 152,615,920 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000085938   ⟹   ENSRNOP00000071375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,984,640 - 145,052,721 (+)Ensembl
Rnor_6.0 Ensembl3153,843,206 - 153,893,847 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087289   ⟹   ENSRNOP00000072128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,984,640 - 145,046,627 (+)Ensembl
Rnor_6.0 Ensembl3152,571,121 - 152,599,512 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087907   ⟹   ENSRNOP00000074285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,984,640 - 145,052,721 (+)Ensembl
Rnor_6.0 Ensembl3153,848,242 - 153,876,938 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089719   ⟹   ENSRNOP00000071420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,984,646 - 145,050,398 (+)Ensembl
Rnor_6.0 Ensembl3152,552,822 - 152,619,722 (+)Ensembl
RefSeq Acc Id: NM_021681   ⟹   NP_067713
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,748 - 165,510,496 (+)NCBI
mRatBN7.23144,984,646 - 145,050,398 (+)NCBI
Rnor_6.03152,552,822 - 152,619,722 (+)NCBI
Rnor_5.03159,071,718 - 159,177,204 (-)NCBI
RGSC_v3.43146,876,451 - 146,944,603 (+)RGD
Celera3143,705,696 - 143,768,990 (+)NCBI
Sequence:
RefSeq Acc Id: NM_172090   ⟹   NP_742087
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,742 - 165,512,819 (+)NCBI
mRatBN7.23144,984,640 - 145,052,721 (+)NCBI
Rnor_6.03152,552,814 - 152,622,045 (+)NCBI
Rnor_5.03159,071,718 - 159,177,204 (-)NCBI
RGSC_v3.43146,876,451 - 146,944,603 (+)RGD
Celera3143,705,696 - 143,771,313 (+)RGD
Sequence:
RefSeq Acc Id: XM_008762381   ⟹   XP_008760603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,662 - 165,512,821 (+)NCBI
mRatBN7.23144,984,296 - 145,052,723 (+)NCBI
Rnor_6.03152,552,828 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592003   ⟹   XP_017447492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
Rnor_6.03152,571,107 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592004   ⟹   XP_017447493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
Rnor_6.03152,571,107 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592005   ⟹   XP_017447494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,428 - 165,512,821 (+)NCBI
mRatBN7.23144,984,297 - 145,052,723 (+)NCBI
Rnor_6.03152,552,828 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592006   ⟹   XP_017447495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,389,295 - 165,512,821 (+)NCBI
mRatBN7.23144,929,195 - 145,052,723 (+)NCBI
Rnor_6.03152,492,725 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592007   ⟹   XP_017447496
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,389,295 - 165,512,821 (+)NCBI
mRatBN7.23144,929,195 - 145,052,723 (+)NCBI
Rnor_6.03152,492,725 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592010   ⟹   XP_017447499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,389,295 - 165,512,821 (+)NCBI
mRatBN7.23144,929,195 - 145,052,723 (+)NCBI
Rnor_6.03152,492,725 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592011   ⟹   XP_017447500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
Rnor_6.03152,571,107 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592012   ⟹   XP_017447501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
Rnor_6.03152,571,107 - 152,622,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105757   ⟹   XP_038961685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
RefSeq Acc Id: XM_039105759   ⟹   XP_038961687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
RefSeq Acc Id: XM_039105762   ⟹   XP_038961690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
mRatBN7.23145,002,284 - 145,052,723 (+)NCBI
RefSeq Acc Id: XM_063284435   ⟹   XP_063140505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,389,295 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284436   ⟹   XP_063140506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,428 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284437   ⟹   XP_063140507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,698 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284438   ⟹   XP_063140508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,698 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284440   ⟹   XP_063140510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,428 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284441   ⟹   XP_063140511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,698 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284442   ⟹   XP_063140512
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,428 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284443   ⟹   XP_063140513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,698 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284444   ⟹   XP_063140514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,428 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284445   ⟹   XP_063140515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,389,307 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284446   ⟹   XP_063140516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,428 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284447   ⟹   XP_063140517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,444,698 - 165,512,821 (+)NCBI
RefSeq Acc Id: XM_063284448   ⟹   XP_063140518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83165,462,384 - 165,512,821 (+)NCBI
Protein Sequences
Protein RefSeqs NP_067713 (Get FASTA)   NCBI Sequence Viewer  
  NP_742087 (Get FASTA)   NCBI Sequence Viewer  
  XP_008760603 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447492 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447493 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447494 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447495 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447496 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447499 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447500 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447501 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961685 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961687 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961690 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140505 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140506 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140507 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140508 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140510 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140511 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140512 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140513 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140514 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140515 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140516 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140517 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140518 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAA76624 (Get FASTA)   NCBI Sequence Viewer  
  BAA76625 (Get FASTA)   NCBI Sequence Viewer  
  EDL85844 (Get FASTA)   NCBI Sequence Viewer  
  EDL85845 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071375.2
  ENSRNOP00000071420
  ENSRNOP00000071420.1
  ENSRNOP00000071547
  ENSRNOP00000071547.2
  ENSRNOP00000071845.2
  ENSRNOP00000072128.2
  ENSRNOP00000074285
  ENSRNOP00000074285.2
  ENSRNOP00055036039
  ENSRNOP00060028639
  ENSRNOP00065037215
GenBank Protein Q9WTP0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_742087   ⟸   NM_172090
- Peptide Label: isoform S
- UniProtKB: Q9WTP1 (UniProtKB/Swiss-Prot),   Q9WTP0 (UniProtKB/Swiss-Prot),   A6KIB0 (UniProtKB/TrEMBL),   D4A9L5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_067713   ⟸   NM_021681
- Peptide Label: isoform L
- UniProtKB: A0A0G2K0F3 (UniProtKB/TrEMBL),   D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760603   ⟸   XM_008762381
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0F3 (UniProtKB/TrEMBL),   D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447496   ⟸   XM_017592007
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0F3 (UniProtKB/TrEMBL),   D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447495   ⟸   XM_017592006
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0F3 (UniProtKB/TrEMBL),   D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447499   ⟸   XM_017592010
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0F3 (UniProtKB/TrEMBL),   D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447494   ⟸   XM_017592005
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0F3 (UniProtKB/TrEMBL),   D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447500   ⟸   XM_017592011
- Peptide Label: isoform X5
- UniProtKB: D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447501   ⟸   XM_017592012
- Peptide Label: isoform X7
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447493   ⟸   XM_017592004
- Peptide Label: isoform X2
- UniProtKB: D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447492   ⟸   XM_017592003
- Peptide Label: isoform X1
- UniProtKB: D3ZMI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071845   ⟸   ENSRNOT00000080543
RefSeq Acc Id: ENSRNOP00000071420   ⟸   ENSRNOT00000089719
RefSeq Acc Id: ENSRNOP00000072128   ⟸   ENSRNOT00000087289
RefSeq Acc Id: ENSRNOP00000071547   ⟸   ENSRNOT00000083476
RefSeq Acc Id: XP_038961687   ⟸   XM_039105759
- Peptide Label: isoform X6
- UniProtKB: D3ZMI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961690   ⟸   XM_039105762
- Peptide Label: isoform X13
- UniProtKB: D4A9L5 (UniProtKB/TrEMBL),   D4ACZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961685   ⟸   XM_039105757
- Peptide Label: isoform X4
- UniProtKB: D3ZMI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000071375   ⟸   ENSRNOT00000085938
RefSeq Acc Id: ENSRNOP00000074285   ⟸   ENSRNOT00000087907
RefSeq Acc Id: XP_063140505   ⟸   XM_063284435
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0F3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140515   ⟸   XM_063284445
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063140506   ⟸   XM_063284436
- Peptide Label: isoform X8
- UniProtKB: Q9WTP1 (UniProtKB/Swiss-Prot),   Q9WTP0 (UniProtKB/Swiss-Prot),   A6KIB0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140512   ⟸   XM_063284442
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063140510   ⟸   XM_063284440
- Peptide Label: isoform X10
- UniProtKB: A0A0G2K0B2 (UniProtKB/TrEMBL),   A6KIB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140514   ⟸   XM_063284444
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063140516   ⟸   XM_063284446
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063140508   ⟸   XM_063284438
- Peptide Label: isoform X10
- UniProtKB: A0A0G2K0B2 (UniProtKB/TrEMBL),   A6KIB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140513   ⟸   XM_063284443
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063140507   ⟸   XM_063284437
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063140511   ⟸   XM_063284441
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063140517   ⟸   XM_063284447
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063140518   ⟸   XM_063284448
- Peptide Label: isoform X16
Protein Domains
FERM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WTP0-F1-model_v2 AlphaFold Q9WTP0 1-879 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692601
Promoter ID:EPDNEW_R3125
Type:single initiation site
Name:LOC100911769_1
Description:band 4.1-like protein 1-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03152,552,864 - 152,552,924EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:71087 AgrOrtholog
BioCyc Gene G2FUF-47093 BioCyc
Ensembl Genes ENSRNOG00000055809 Ensembl
  ENSRNOG00000057817 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055025435 UniProtKB/Swiss-Prot
  ENSRNOG00060019937 UniProtKB/Swiss-Prot
  ENSRNOG00065026205 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000080543.2 UniProtKB/TrEMBL
  ENSRNOT00000083476 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000083476.2 UniProtKB/Swiss-Prot
  ENSRNOT00000085938.2 UniProtKB/TrEMBL
  ENSRNOT00000087289.2 UniProtKB/TrEMBL
  ENSRNOT00000087907 ENTREZGENE
  ENSRNOT00000087907.2 UniProtKB/TrEMBL
  ENSRNOT00000089719 ENTREZGENE
  ENSRNOT00000089719.2 UniProtKB/TrEMBL
  ENSRNOT00055044058 UniProtKB/Swiss-Prot
  ENSRNOT00060034884 UniProtKB/Swiss-Prot
  ENSRNOT00065045384 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.80.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Band_4.1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Band_41_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ez/rad/moesin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM-adjacent UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_central UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAB_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:59317 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene Epb41l1 ENTREZGENE
PANTHER 4.1 G PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BAND 4.1-LIKE PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 4_1_CTD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_M UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF08736 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Epb41l1 PhenoGen
PIRSF Membrane_skeletal_4_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS BAND41 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FERM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000055809 RatGTEx
  ENSRNOG00000057817 RatGTEx
  ENSRNOG00055025435 RatGTEx
  ENSRNOG00060019937 RatGTEx
  ENSRNOG00065026205 RatGTEx
SMART B41 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM01195 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47031 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K0B2 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K0F3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K271_RAT UniProtKB/TrEMBL
  A6KIB0 ENTREZGENE, UniProtKB/TrEMBL
  A6KIB1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZMI4 ENTREZGENE, UniProtKB/TrEMBL
  D4A9L5 ENTREZGENE, UniProtKB/TrEMBL
  D4ACZ4 ENTREZGENE, UniProtKB/TrEMBL
  E41L1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q9WTP1 ENTREZGENE
UniProt Secondary Q9WTP1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Epb41l1  erythrocyte membrane protein band 4.1-like 1  LOC100911769  band 4.1-like protein 1-like  Data merged from RGD:6490915 737654 PROVISIONAL
2012-07-05 LOC100911769  band 4.1-like protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-07-09 Epb4.1l1  erythrocyte protein band 4.1-like 1      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression enriched in brain 70731
gene_product member of the protein 4.1 family 70731