Adrm1 (ADRM1 26S proteasome ubiquitin receptor) - Rat Genome Database

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Gene: Adrm1 (ADRM1 26S proteasome ubiquitin receptor) Rattus norvegicus
Analyze
Symbol: Adrm1
Name: ADRM1 26S proteasome ubiquitin receptor
RGD ID: 69248
Description: Predicted to enable several functions, including endopeptidase activator activity; proteasome binding activity; and ubiquitin binding activity. Predicted to be involved in several processes, including germ cell development; gonad development; and positive regulation of growth hormone receptor signaling pathway. Predicted to be located in cytosol; nucleoplasm; and plasma membrane. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human ADRM1 (ADRM1 26S proteasome ubiquitin receptor); INTERACTS WITH (+)-schisandrin B; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 110 kDa cell membrane glycoprotein; adhesion regulating molecule 1; adhesion-regulating molecule 1; ARM-1; cell membrane glycoprotein 110000M(r) (surface antigen); cell membrane glycoprotein, 110000M(r) (surface antigen); glycoprotein 110; Gp110; proteasomal ubiquitin receptor ADRM1; rpn13 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23167,265,435 - 167,270,197 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,265,296 - 167,270,195 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03175,548,181 - 175,552,943 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,548,174 - 175,552,947 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03181,565,740 - 181,570,623 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,229,036 - 169,233,798 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,135,071 - 169,139,832 (+)NCBI
Celera3165,309,978 - 165,314,740 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4-hydroxycoumarin  (ISO)
acrylamide  (ISO)
ammonium chloride  (EXP)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
fenthion  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
glyphosate  (EXP)
hypochlorous acid  (ISO)
imidacloprid  (EXP)
ivermectin  (ISO)
leflunomide  (EXP)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
PCB138  (EXP)
pentachlorophenol  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
quercetin  (ISO)
rotenone  (EXP)
selenium atom  (ISO)
sodium arsenite  (EXP,ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thiabendazole  (EXP)
triptonide  (ISO)
tunicamycin  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat homologue of the human M(r) 110000 antigen is the protein that expresses widely in various tissues. Nakane T, etal., Biochim Biophys Acta 2000 Oct 2;1493(3):378-82.
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:11818576   PMID:16990800   PMID:17323924   PMID:18162577   PMID:18922472   PMID:19182904   PMID:21048919   PMID:22871113   PMID:31505169  


Genomics

Comparative Map Data
Adrm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23167,265,435 - 167,270,197 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,265,296 - 167,270,195 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03175,548,181 - 175,552,943 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,548,174 - 175,552,947 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03181,565,740 - 181,570,623 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,229,036 - 169,233,798 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,135,071 - 169,139,832 (+)NCBI
Celera3165,309,978 - 165,314,740 (-)NCBICelera
Cytogenetic Map3q43NCBI
ADRM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,302,896 - 62,308,862 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2062,302,093 - 62,308,862 (+)EnsemblGRCh38hg38GRCh38
GRCh372060,877,952 - 60,883,918 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,311,422 - 60,317,313 (+)NCBINCBI36Build 36hg18NCBI36
Build 342060,311,421 - 60,317,311NCBI
Celera2057,613,180 - 57,619,071 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2057,653,756 - 57,659,722 (+)NCBIHuRef
CHM1_12060,778,716 - 60,784,682 (+)NCBICHM1_1
T2T-CHM13v2.02064,093,845 - 64,099,811 (+)NCBIT2T-CHM13v2.0
Adrm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392179,813,381 - 179,818,076 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2179,813,278 - 179,818,079 (+)EnsemblGRCm39 Ensembl
GRCm382180,171,588 - 180,176,283 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,171,485 - 180,176,286 (+)EnsemblGRCm38mm10GRCm38
MGSCv372179,906,293 - 179,910,988 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,100,996 - 180,105,691 (+)NCBIMGSCv36mm8
Celera2184,253,798 - 184,258,493 (+)NCBICelera
Cytogenetic Map2H4NCBI
Adrm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,753,450 - 1,759,886 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555281,753,450 - 1,759,886 (-)NCBIChiLan1.0ChiLan1.0
ADRM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12059,985,358 - 59,991,668 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2059,985,358 - 59,991,668 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02058,667,601 - 58,673,566 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ADRM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,309,478 - 46,314,892 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,275,175 - 46,491,347 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,545,977 - 45,551,893 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,165,587 - 47,171,518 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,165,587 - 47,171,518 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,266,793 - 46,272,718 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,390,031 - 46,395,966 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,144,420 - 47,150,335 (+)NCBIUU_Cfam_GSD_1.0
Adrm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,470,280 - 194,474,527 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365149,923,956 - 9,928,168 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADRM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1761,692,945 - 61,698,144 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11761,692,923 - 61,698,138 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ADRM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121,930,281 - 1,936,323 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21,925,382 - 1,936,393 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605049,877,847 - 49,883,920 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adrm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,151,643 - 28,156,828 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474128,151,404 - 28,156,830 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
AU043535  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23167,269,626 - 167,270,028 (+)MAPPERmRatBN7.2
Rnor_6.03175,552,373 - 175,552,774NCBIRnor6.0
Rnor_5.03181,565,909 - 181,566,310UniSTSRnor5.0
RGSC_v3.43169,233,228 - 169,233,629UniSTSRGSC3.4
Celera3165,310,147 - 165,310,548UniSTS
Cytogenetic Map3q43UniSTS
RH128438  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23167,270,438 - 167,270,636 (+)MAPPERmRatBN7.2
Rnor_6.03175,553,185 - 175,553,382NCBIRnor6.0
Rnor_5.03181,565,301 - 181,565,498UniSTSRnor5.0
RGSC_v3.43169,234,040 - 169,234,237UniSTSRGSC3.4
Celera3165,309,539 - 165,309,736UniSTS
RH 3.4 Map31525.3UniSTS
Cytogenetic Map3q43UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:138
Count of miRNA genes:111
Interacting mature miRNAs:117
Transcripts:ENSRNOT00000010087
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000091941   ⟹   ENSRNOP00000074216
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,265,296 - 167,270,195 (+)Ensembl
Rnor_6.0 Ensembl3175,548,174 - 175,552,947 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119821   ⟹   ENSRNOP00000086833
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,265,437 - 167,270,183 (+)Ensembl
RefSeq Acc Id: NM_031708   ⟹   NP_113896
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23167,265,435 - 167,270,197 (+)NCBI
Rnor_6.03175,548,181 - 175,552,943 (+)NCBI
Rnor_5.03181,565,740 - 181,570,623 (-)NCBI
RGSC_v3.43169,229,036 - 169,233,798 (+)RGD
Celera3165,309,978 - 165,314,740 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_113896 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH61773 (Get FASTA)   NCBI Sequence Viewer  
  BAA92929 (Get FASTA)   NCBI Sequence Viewer  
  EDL88822 (Get FASTA)   NCBI Sequence Viewer  
  Q9JMB5 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_113896   ⟸   NM_031708
- UniProtKB: Q9JMB5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074216   ⟸   ENSRNOT00000091941
RefSeq Acc Id: ENSRNOP00000086833   ⟸   ENSRNOT00000119821
Protein Domains
DEUBAD   Pru

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JMB5-F1-model_v2 AlphaFold Q9JMB5 1-407 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692731
Promoter ID:EPDNEW_R3256
Type:initiation region
Name:Adrm1_1
Description:adhesion regulating molecule 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03175,548,176 - 175,548,236EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69248 AgrOrtholog
BioCyc Gene G2FUF-46365 BioCyc
Ensembl Genes ENSRNOG00000055984 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000074216 ENTREZGENE
  ENSRNOP00000074216.2 UniProtKB/TrEMBL
  ENSRNOP00000086833.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000091941 ENTREZGENE
  ENSRNOT00000091941.2 UniProtKB/TrEMBL
  ENSRNOT00000119821.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.2020.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.29.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5621873 IMAGE-MGC_LOAD
InterPro DEUBAD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rpn13/ADRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rpn13/ADRM1_Pru UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rpn13/ADRM1_Pru_sf UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  RPN13_C UniProtKB/Swiss-Prot
  RPN13_C_sf UniProtKB/Swiss-Prot
  RPN13_DEUBAD UniProtKB/TrEMBL
  RPN13_DEUBAD_sf UniProtKB/TrEMBL
KEGG Report rno:65138 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72391 IMAGE-MGC_LOAD
NCBI Gene 65138 ENTREZGENE
PANTHER PTHR12225 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Proteasom_Rpn13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPN13_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Adrm1 PhenoGen
PROSITE DEUBAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC230309
UniProt A0A8I6A635_RAT UniProtKB/TrEMBL
  A0A8L2R918_RAT UniProtKB/TrEMBL
  ADRM1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q6P795 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Adrm1  ADRM1 26S proteasome ubiquitin receptor  Adrm1  adhesion regulating molecule 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Adrm1  adhesion regulating molecule 1      Symbol and Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference