Syncrip-ps2 (synaptotagmin binding, cytoplasmic RNA interacting protein, pseudogene 2) - Rat Genome Database

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Gene: Syncrip-ps2 (synaptotagmin binding, cytoplasmic RNA interacting protein, pseudogene 2) Rattus norvegicus
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Symbol: Syncrip-ps2
Name: synaptotagmin binding, cytoplasmic RNA interacting protein, pseudogene 2
RGD ID: 6500498
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heterogeneous nuclear ribonucleoprotein Q-like; LOC100910069; LOC102554001; uncharacterized LOC100910069; uncharacterized LOC102554001
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8898,349,672 - 98,378,405 (-)NCBIGRCr8
mRatBN7.2889,469,798 - 89,496,534 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0896,238,266 - 96,329,246 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0895,733,811 - 95,762,622 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Syncrip-ps2
131 total Variants

1 to 10 of 44 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat

1 to 10 of 44 rows






RefSeq Acc Id: XM_063266428   ⟹   XP_063122498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8898,349,672 - 98,378,405 (-)NCBI
RefSeq Acc Id: XM_063266429   ⟹   XP_063122499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8898,349,672 - 98,378,405 (-)NCBI
RefSeq Acc Id: XM_063266430   ⟹   XP_063122500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8898,349,672 - 98,378,405 (-)NCBI
RefSeq Acc Id: XM_063266431   ⟹   XP_063122501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8898,366,101 - 98,378,405 (-)NCBI
RefSeq Acc Id: XM_063266432   ⟹   XP_063122502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8898,351,818 - 98,378,405 (-)NCBI
RefSeq Acc Id: XM_063266433   ⟹   XP_063122503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8898,351,716 - 98,373,695 (-)NCBI
RefSeq Acc Id: XM_063266434   ⟹   XP_063122504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8898,369,697 - 98,377,630 (-)NCBI
RefSeq Acc Id: XM_063266436   ⟹   XP_063122506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8898,369,696 - 98,377,630 (-)NCBI
RefSeq Acc Id: XR_010054445
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8898,349,672 - 98,373,657 (-)NCBI
RefSeq Acc Id: XR_010054446
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8898,349,672 - 98,373,533 (-)NCBI
RefSeq Acc Id: XP_063122499   ⟸   XM_063266429
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063122500   ⟸   XM_063266430
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063122498   ⟸   XM_063266428
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063122503   ⟸   XM_063266433
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063122502   ⟸   XM_063266432
- Peptide Label: isoform X3



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-29607 BioCyc
NCBI Gene LOC100910069 ENTREZGENE
PhenoGen Syncrip-ps2 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Syncrip-ps2  synaptotagmin binding, cytoplasmic RNA interacting protein, pseudogene 2  LOC100910069  uncharacterized LOC100910069  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC100910069  uncharacterized LOC100910069  LOC102554001  uncharacterized LOC102554001  Data merged from RGD:7549541 737654 PROVISIONAL
2013-12-17 LOC102554001  uncharacterized LOC102554001      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100910069  uncharacterized LOC100910069      Symbol and Name status set to provisional 70820 PROVISIONAL