VTI1BP2 (vesicle transport through interaction with t-SNAREs 1B pseudogene 2) - Rat Genome Database

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Gene: VTI1BP2 (vesicle transport through interaction with t-SNAREs 1B pseudogene 2) Homo sapiens
Analyze
Symbol: VTI1BP2
Name: vesicle transport through interaction with t-SNAREs 1B pseudogene 2
RGD ID: 5687891
HGNC Page HGNC:43728
Description: INTERACTS WITH lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: VTI1B  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384183,483,350 - 183,484,428 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4183,483,490 - 183,484,185 (+)EnsemblGRCh38hg38GRCh38
GRCh374184,404,503 - 184,405,581 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364184,641,403 - 184,642,678 (+)NCBINCBI36Build 36hg18NCBI36
Celera4181,737,352 - 181,738,418 (+)NCBICelera
Cytogenetic Map4q35.1NCBI
HuRef4180,163,899 - 180,164,965 (+)NCBIHuRef
CHM1_14184,381,283 - 184,382,349 (+)NCBICHM1_1
T2T-CHM13v2.04186,826,146 - 186,827,224 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:9847074  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:109
Interacting mature miRNAs:111
Transcripts:ENST00000394154
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 35 35 454 23 138 17 135 64 500 17 467 107 8 19 102
Below cutoff 1276 1223 800 334 737 241 2272 1187 2238 192 553 925 97 662 1477 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000394154
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4183,483,490 - 183,484,185 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC VTI1BP2 COSMIC
Ensembl Genes ENSG00000213434 Ensembl
GTEx ENSG00000213434 GTEx
HGNC ID HGNC:43728 ENTREZGENE
Human Proteome Map VTI1BP2 Human Proteome Map
NCBI Gene VTI1BP2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-12 VTI1BP2  vesicle transport through interaction with t-SNAREs 1B pseudogene 2    vesicle transport through interaction with t-SNAREs homolog 1B (yeast) pseudogene 2  Symbol and/or name change 5135510 APPROVED