LOC120095740 (small nucleolar RNA SNORA48) - Rat Genome Database

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Gene: LOC120095740 (small nucleolar RNA SNORA48) Rattus norvegicus
Analyze
Symbol: LOC120095740
Name: small nucleolar RNA SNORA48
RGD ID: 41293460
Description:
Type: snorna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81120,265,142 - 20,265,285 (-)NCBIGRCr8
mRatBN7.2116,818,658 - 6,818,801 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl116,818,658 - 6,818,801 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map11p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120095740
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005491533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000110060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl116,818,658 - 6,818,801 (-)Ensembl
RefSeq Acc Id: XR_005491533
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81120,265,142 - 20,265,285 (-)NCBI
mRatBN7.2116,818,658 - 6,818,801 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22285 BioCyc
Ensembl Genes ENSRNOG00000062757 Ensembl
NCBI Gene LOC120095740 ENTREZGENE
PhenoGen LOC120095740 PhenoGen
RatGTEx ENSRNOG00000062757 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120095740  small nucleolar RNA SNORA48      Symbol and Name status set to provisional 70820 PROVISIONAL