LOC120095711 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120095711 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120095711
Name: U6 spliceosomal RNA
RGD ID: 41074576
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81117,518,303 - 17,518,407 (-)NCBIGRCr8
mRatBN7.2114,071,830 - 4,071,934 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl114,071,830 - 4,071,934 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map11p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120095711
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81117,518,303 - 17,518,407 (-)NCBIGRCr8
mRatBN7.2114,071,830 - 4,071,934 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl114,071,830 - 4,071,934 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map11p12NCBI
RNU6-961P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38220,175,805 - 20,175,909 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl220,175,805 - 20,175,909 (+)EnsemblGRCh38hg38GRCh38
GRCh37220,375,566 - 20,375,670 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p24.1NCBI
T2T-CHM13v2.0220,209,359 - 20,209,463 (+)NCBIT2T-CHM13v2.0
Gm25924
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397120,623,583 - 120,623,685 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7120,623,583 - 120,623,685 (-)EnsemblGRCm39 Ensembl
GRCm387121,024,360 - 121,024,462 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7121,024,360 - 121,024,462 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map7F2NCBI
LOC119865290
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2211,436,250 - 11,436,349 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02211,669,631 - 11,669,730 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2211,669,631 - 11,669,730 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12211,370,159 - 11,370,258 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02211,414,818 - 11,414,917 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02211,433,687 - 11,433,786 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005491510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000101141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl114,071,830 - 4,071,934 (-)Ensembl
RefSeq Acc Id: XR_005491510
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81117,518,303 - 17,518,407 (-)NCBI
mRatBN7.2114,071,830 - 4,071,934 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22300 BioCyc
Ensembl Genes ENSRNOG00000063650 Ensembl
NCBI Gene LOC120095711 ENTREZGENE
PhenoGen LOC120095711 PhenoGen
RatGTEx ENSRNOG00000063650 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120095711  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL