LOC120095757 (small nucleolar RNA SNORA17) - Rat Genome Database

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Gene: LOC120095757 (small nucleolar RNA SNORA17) Rattus norvegicus
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Symbol: LOC120095757
Name: small nucleolar RNA SNORA17
RGD ID: 40966767
Description:
Type: pseudo (Ensembl: snoRNA)
RefSeq Status: MODEL
Previously known as: AABR07033303.1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81130,406,691 - 30,406,829 (+)NCBIGRCr8
mRatBN7.21116,919,776 - 16,919,914 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1116,919,776 - 16,919,914 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1116,919,776 - 16,919,914 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1116,763,425 - 16,763,563 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120095757
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)111283104625121472Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000084301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1116,919,776 - 16,919,914 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22142 BioCyc
Ensembl Genes ENSRNOG00000060397 Ensembl
NCBI Gene LOC120095757 ENTREZGENE
PhenoGen LOC120095757 PhenoGen
RatGTEx ENSRNOG00000060397 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120095757  small nucleolar RNA SNORA17  AABR07033303.1    Data merged from RGD:15013291 737654 PROVISIONAL
2021-01-26 LOC120095757  small nucleolar RNA SNORA17      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07033303.1        Symbol and Name status set to provisional 45752 PROVISIONAL