Tcf12 (transcription factor 12) - Rat Genome Database

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Gene: Tcf12 (transcription factor 12) Rattus norvegicus
Analyze
Symbol: Tcf12
Name: transcription factor 12
RGD ID: 3829
Description: Enables HMG box domain binding activity and cAMP response element binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleus. Human ortholog(s) of this gene implicated in craniosynostosis and hypogonadotropic hypogonadism. Orthologous to human TCF12 (transcription factor 12); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DNA-binding protein HTF4; E-box-binding protein; salivary-specific cAMP response element-binding protein alpha; SCBP alpha; SCBP-alpha; SCBPA; TCF-12; transcription factor HTF-4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8881,371,201 - 81,682,337 (-)NCBIGRCr8
mRatBN7.2872,490,447 - 72,799,265 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl872,492,567 - 72,799,201 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx878,027,416 - 78,332,767 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0876,300,090 - 76,605,434 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0874,137,436 - 74,442,798 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0878,343,634 - 78,657,738 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl878,345,754 - 78,655,856 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0874,423,476 - 74,735,375 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4876,311,327 - 76,498,091 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1876,330,380 - 76,517,143 (-)NCBI
Celera868,938,004 - 69,243,587 (+)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
4-hydroperoxycyclophosphamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
cantharidin  (ISO)
cefaloridine  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dimethylarsinous acid  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
ellagic acid  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
hydralazine  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
indirubin  (ISO)
irinotecan  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
methidathion  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
N,N-diethyl-m-toluamide  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenethyl isothiocyanate  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tetraphene  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
venlafaxine hydrochloride  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The helix-loop-helix proteins (salivary-specific cAMP response element-binding proteins) can modulate cAMP-inducible RP4 gene expression in salivary cells. Lin HH, etal., J Biol Chem 1993 May 15;268(14):10214-20.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Helix-loop-helix proteins in Schwann cells: a study of regulation and subcellular localization of Ids, REB, and E12/47 during embryonic and postnatal development. Stewart HJ, etal., J Neurosci Res. 1997 Dec 1;50(5):684-701.
9. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
10. The high-mobility-group domain of Sox proteins interacts with DNA-binding domains of many transcription factors. Wissmuller S, etal., Nucleic Acids Res. 2006 Mar 31;34(6):1735-44. Print 2006.
Additional References at PubMed
PMID:1321336   PMID:1720355   PMID:1922066   PMID:8422988   PMID:11802795   PMID:15351717   PMID:15554944   PMID:18214987   PMID:18958875   PMID:21828274   PMID:21982980  


Genomics

Comparative Map Data
Tcf12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8881,371,201 - 81,682,337 (-)NCBIGRCr8
mRatBN7.2872,490,447 - 72,799,265 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl872,492,567 - 72,799,201 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx878,027,416 - 78,332,767 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0876,300,090 - 76,605,434 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0874,137,436 - 74,442,798 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0878,343,634 - 78,657,738 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl878,345,754 - 78,655,856 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0874,423,476 - 74,735,375 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4876,311,327 - 76,498,091 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1876,330,380 - 76,517,143 (-)NCBI
Celera868,938,004 - 69,243,587 (+)NCBICelera
Cytogenetic Map8q24NCBI
TCF12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381556,918,090 - 57,291,310 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1556,918,623 - 57,299,281 (+)EnsemblGRCh38hg38GRCh38
GRCh371557,210,288 - 57,583,508 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361554,998,125 - 55,368,008 (+)NCBINCBI36Build 36hg18NCBI36
Build 341555,298,946 - 55,368,004NCBI
Celera1534,101,089 - 34,470,989 (+)NCBICelera
Cytogenetic Map15q21.3NCBI
HuRef1534,034,113 - 34,404,326 (+)NCBIHuRef
CHM1_11557,329,060 - 57,698,836 (+)NCBICHM1_1
T2T-CHM13v2.01554,721,353 - 55,094,637 (+)NCBIT2T-CHM13v2.0
Tcf12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39971,751,534 - 72,019,611 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl971,749,970 - 72,019,153 (-)EnsemblGRCm39 Ensembl
GRCm38971,844,252 - 72,111,893 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl971,842,688 - 72,111,871 (-)EnsemblGRCm38mm10GRCm38
MGSCv37971,692,059 - 71,959,626 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36971,644,313 - 71,910,179 (-)NCBIMGSCv36mm8
Celera969,039,252 - 69,300,279 (-)NCBICelera
Cytogenetic Map9DNCBI
cM Map939.85NCBI
Tcf12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545016,979,414 - 17,376,055 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545016,979,990 - 17,375,264 (-)NCBIChiLan1.0ChiLan1.0
TCF12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21646,179,143 - 46,550,606 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11550,361,429 - 50,733,618 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01535,885,421 - 36,257,632 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11554,200,383 - 54,570,440 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1554,202,862 - 54,570,440 (+)Ensemblpanpan1.1panPan2
TCF12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13022,108,841 - 22,473,224 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3022,108,371 - 22,471,275 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3022,071,940 - 22,446,559 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03022,257,327 - 22,632,225 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3022,258,049 - 22,632,217 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13022,197,284 - 22,565,688 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03022,282,390 - 22,650,433 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03022,416,469 - 22,791,218 (+)NCBIUU_Cfam_GSD_1.0
Tcf12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640100,375,132 - 100,729,321 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647118,223,221 - 18,576,922 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCF12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1114,682,303 - 115,056,262 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11114,682,299 - 115,056,363 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21126,843,706 - 126,865,421 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCF12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12626,219,881 - 26,585,452 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2626,218,496 - 26,583,684 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048114,727,993 - 115,093,198 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcf12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478114,433,557 - 14,847,634 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tcf12
876 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:68
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000023634, ENSRNOT00000035883
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)84186687675097878Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85009524982460899Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85009524982460899Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)85404374498968765Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)85423764485365202Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)85423764485365202Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)85423764499103503Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat

Markers in Region
RH94512  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2872,492,563 - 72,492,762 (+)MAPPERmRatBN7.2
Rnor_6.0878,345,751 - 78,345,949NCBIRnor6.0
Rnor_5.0874,733,060 - 74,733,258UniSTSRnor5.0
RGSC_v3.4876,311,324 - 76,311,522UniSTSRGSC3.4
Celera869,243,392 - 69,243,590UniSTS
Cytogenetic Map8q24UniSTS
Tcf12  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2872,492,432 - 72,492,613 (+)MAPPERmRatBN7.2
Rnor_6.0878,345,620 - 78,345,800NCBIRnor6.0
Rnor_5.0874,733,209 - 74,733,389UniSTSRnor5.0
RGSC_v3.4876,311,193 - 76,311,373UniSTSRGSC3.4
Celera869,243,541 - 69,243,721UniSTS
Cytogenetic Map8q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 40 46 30 19 30 8 8 74 35 37 11 8
Low 3 11 11 11 3 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ973226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L09656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000081185   ⟹   ENSRNOP00000074384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl872,492,567 - 72,799,201 (-)Ensembl
Rnor_6.0 Ensembl878,345,754 - 78,655,856 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084925   ⟹   ENSRNOP00000071744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl872,492,591 - 72,544,502 (-)Ensembl
Rnor_6.0 Ensembl878,345,778 - 78,397,210 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087270   ⟹   ENSRNOP00000075657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl872,492,567 - 72,799,201 (-)Ensembl
Rnor_6.0 Ensembl878,348,962 - 78,397,123 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115648   ⟹   ENSRNOP00000083396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl872,597,301 - 72,799,201 (-)Ensembl
RefSeq Acc Id: NM_013176   ⟹   NP_037308
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,373,321 - 81,679,922 (-)NCBI
mRatBN7.2872,492,567 - 72,799,201 (-)NCBI
Rnor_6.0878,345,754 - 78,655,856 (-)NCBI
Rnor_5.0874,423,476 - 74,735,375 (+)NCBI
RGSC_v3.4876,311,327 - 76,498,091 (-)RGD
Celera868,938,004 - 69,243,587 (+)RGD
Sequence:
RefSeq Acc Id: XM_006243345   ⟹   XP_006243407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,682,337 (-)NCBI
mRatBN7.2872,490,447 - 72,799,263 (-)NCBI
Rnor_6.0878,343,634 - 78,657,738 (-)NCBI
Rnor_5.0874,423,476 - 74,735,375 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243346   ⟹   XP_006243408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,682,337 (-)NCBI
mRatBN7.2872,490,447 - 72,799,263 (-)NCBI
Rnor_6.0878,343,634 - 78,657,738 (-)NCBI
Rnor_5.0874,423,476 - 74,735,375 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243347   ⟹   XP_006243409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,682,337 (-)NCBI
mRatBN7.2872,490,447 - 72,799,262 (-)NCBI
Rnor_6.0878,343,634 - 78,657,737 (-)NCBI
Rnor_5.0874,423,476 - 74,735,375 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243348   ⟹   XP_006243410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,682,337 (-)NCBI
mRatBN7.2872,490,447 - 72,799,262 (-)NCBI
Rnor_6.0878,343,634 - 78,657,737 (-)NCBI
Rnor_5.0874,423,476 - 74,735,375 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243349   ⟹   XP_006243411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,682,337 (-)NCBI
mRatBN7.2872,490,447 - 72,799,263 (-)NCBI
Rnor_6.0878,343,634 - 78,657,737 (-)NCBI
Rnor_5.0874,423,476 - 74,735,375 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243350   ⟹   XP_006243412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,682,337 (-)NCBI
mRatBN7.2872,490,447 - 72,799,263 (-)NCBI
Rnor_6.0878,343,634 - 78,657,737 (-)NCBI
Rnor_5.0874,423,476 - 74,735,375 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243351   ⟹   XP_006243413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,677,978 (-)NCBI
mRatBN7.2872,490,447 - 72,797,252 (-)NCBI
Rnor_6.0878,343,634 - 78,538,216 (-)NCBI
Rnor_5.0874,423,476 - 74,735,375 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243352   ⟹   XP_006243414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,425,266 (-)NCBI
mRatBN7.2872,490,447 - 72,544,772 (-)NCBI
Rnor_6.0878,343,634 - 78,397,480 (-)NCBI
Rnor_5.0874,423,476 - 74,735,375 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243353   ⟹   XP_006243415
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,425,266 (-)NCBI
mRatBN7.2872,490,447 - 72,544,772 (-)NCBI
Rnor_6.0878,343,634 - 78,397,480 (-)NCBI
Rnor_5.0874,423,476 - 74,735,375 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243354   ⟹   XP_006243416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,425,266 (-)NCBI
mRatBN7.2872,490,447 - 72,544,772 (-)NCBI
Rnor_6.0878,343,634 - 78,397,480 (-)NCBI
Rnor_5.0874,423,476 - 74,735,375 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008766219   ⟹   XP_008764441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,425,266 (-)NCBI
mRatBN7.2872,490,447 - 72,544,772 (-)NCBI
Rnor_6.0878,343,634 - 78,397,480 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595483   ⟹   XP_017450972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,682,337 (-)NCBI
mRatBN7.2872,490,447 - 72,799,263 (-)NCBI
Rnor_6.0878,343,634 - 78,657,738 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595484   ⟹   XP_017450973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,559,195 (-)NCBI
mRatBN7.2872,490,447 - 72,797,256 (-)NCBI
Rnor_6.0878,343,634 - 78,538,216 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595485   ⟹   XP_017450974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,559,195 (-)NCBI
mRatBN7.2872,490,447 - 72,797,255 (-)NCBI
Rnor_6.0878,343,634 - 78,538,216 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080904   ⟹   XP_038936832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,682,337 (-)NCBI
mRatBN7.2872,490,447 - 72,799,264 (-)NCBI
RefSeq Acc Id: XM_039080905   ⟹   XP_038936833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,682,337 (-)NCBI
mRatBN7.2872,490,447 - 72,799,265 (-)NCBI
RefSeq Acc Id: XM_039080906   ⟹   XP_038936834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,682,337 (-)NCBI
mRatBN7.2872,490,447 - 72,799,264 (-)NCBI
RefSeq Acc Id: XM_039080907   ⟹   XP_038936835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,682,337 (-)NCBI
mRatBN7.2872,490,447 - 72,799,264 (-)NCBI
RefSeq Acc Id: XM_039080908   ⟹   XP_038936836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,425,266 (-)NCBI
mRatBN7.2872,490,447 - 72,544,772 (-)NCBI
RefSeq Acc Id: XM_063264980   ⟹   XP_063121050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,682,337 (-)NCBI
RefSeq Acc Id: XM_063264981   ⟹   XP_063121051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,425,266 (-)NCBI
RefSeq Acc Id: XM_063264982   ⟹   XP_063121052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8881,371,201 - 81,425,266 (-)NCBI
Protein Sequences
Protein RefSeqs NP_037308 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243407 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243408 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243409 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243410 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243411 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243412 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243413 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243414 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243415 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243416 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764441 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450972 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450973 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450974 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936832 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936833 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936834 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936835 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936836 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121050 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121051 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121052 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA42115 (Get FASTA)   NCBI Sequence Viewer  
  CAJ00425 (Get FASTA)   NCBI Sequence Viewer  
  EDL84152 (Get FASTA)   NCBI Sequence Viewer  
  EDL84153 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071744
  ENSRNOP00000071744.1
  ENSRNOP00000074384
  ENSRNOP00000074384.1
  ENSRNOP00000075657
  ENSRNOP00000075657.2
  ENSRNOP00000083396.1
GenBank Protein P51514 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_037308   ⟸   NM_013176
- UniProtKB: P51514 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006243408   ⟸   XM_006243346
- Peptide Label: isoform X2
- UniProtKB: P51514 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006243409   ⟸   XM_006243347
- Peptide Label: isoform X7
- UniProtKB: A0A0G2KB53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243411   ⟸   XM_006243349
- Peptide Label: isoform X10
- UniProtKB: P51514 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006243407   ⟸   XM_006243345
- Peptide Label: isoform X1
- UniProtKB: A6KEQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243410   ⟸   XM_006243348
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006243412   ⟸   XM_006243350
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006243413   ⟸   XM_006243351
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_006243414   ⟸   XM_006243352
- Peptide Label: isoform X16
- UniProtKB: A0A0G2K188 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243415   ⟸   XM_006243353
- Peptide Label: isoform X17
- UniProtKB: A0A0G2K188 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243416   ⟸   XM_006243354
- Peptide Label: isoform X19
- UniProtKB: A0A0G2K188 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764441   ⟸   XM_008766219
- Peptide Label: isoform X18
- UniProtKB: A0A0G2K188 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450972   ⟸   XM_017595483
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017450974   ⟸   XM_017595485
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017450973   ⟸   XM_017595484
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: ENSRNOP00000071744   ⟸   ENSRNOT00000084925
RefSeq Acc Id: ENSRNOP00000075657   ⟸   ENSRNOT00000087270
RefSeq Acc Id: ENSRNOP00000074384   ⟸   ENSRNOT00000081185
RefSeq Acc Id: XP_038936833   ⟸   XM_039080905
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038936835   ⟸   XM_039080907
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038936834   ⟸   XM_039080906
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038936832   ⟸   XM_039080904
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038936836   ⟸   XM_039080908
- Peptide Label: isoform X20
- UniProtKB: A0A0G2K188 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000083396   ⟸   ENSRNOT00000115648
RefSeq Acc Id: XP_063121050   ⟸   XM_063264980
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063121052   ⟸   XM_063264982
- Peptide Label: isoform X22
- UniProtKB: A0A0G2K188 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121051   ⟸   XM_063264981
- Peptide Label: isoform X21
- UniProtKB: A0A0G2K188 (UniProtKB/TrEMBL)
Protein Domains
bHLH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P51514-F1-model_v2 AlphaFold P51514 1-707 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696113
Promoter ID:EPDNEW_R6637
Type:initiation region
Name:Tcf12_1
Description:transcription factor 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0878,655,940 - 78,656,000EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3829 AgrOrtholog
BioCyc Gene G2FUF-29893 BioCyc
Ensembl Genes ENSRNOG00000057754 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000081185 ENTREZGENE
  ENSRNOT00000081185.2 UniProtKB/Swiss-Prot
  ENSRNOT00000084925.2 UniProtKB/TrEMBL
  ENSRNOT00000087270.2 UniProtKB/TrEMBL
  ENSRNOT00000115648.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25720 UniProtKB/Swiss-Prot
NCBI Gene 25720 ENTREZGENE
PANTHER BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR 12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tcf12 PhenoGen
PROSITE BHLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000057754 RatGTEx
SMART HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC207369
UniProt A0A0G2K188 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2KB53 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVZ7_RAT UniProtKB/TrEMBL
  A6KEQ2 ENTREZGENE, UniProtKB/TrEMBL
  HTF4_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Tcf12  Transcription factor 12      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression mRNA expressed in salivary cells 729997
gene_protein putative protein contains 707 aa residues 729997