PHLDA2 (pleckstrin homology like domain family A member 2) - Rat Genome Database

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Gene: PHLDA2 (pleckstrin homology like domain family A member 2) Pan paniscus
Analyze
Symbol: PHLDA2
Name: pleckstrin homology like domain family A member 2
RGD ID: 32728449
Description: INVOLVED IN animal organ morphogenesis (ortholog); placenta development (ortholog); regulation of cell migration (ortholog); ASSOCIATED WITH COVID-19 (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pleckstrin homology-like domain family A member 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v295,339,639 - 5,340,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1114,551,543 - 4,552,607 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0112,953,864 - 2,954,923 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PHLDA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v295,339,639 - 5,340,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1114,551,543 - 4,552,607 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0112,953,864 - 2,954,923 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PHLDA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38112,928,273 - 2,929,420 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl112,928,273 - 2,929,420 (-)EnsemblGRCh38hg38GRCh38
GRCh37112,949,503 - 2,950,650 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36112,906,079 - 2,907,226 (-)NCBINCBI36Build 36hg18NCBI36
Build 34112,906,078 - 2,907,226NCBI
Celera112,984,154 - 2,985,301 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef112,737,934 - 2,739,081 (-)NCBIHuRef
CHM1_1112,948,223 - 2,949,370 (-)NCBICHM1_1
T2T-CHM13v2.0113,017,370 - 3,018,517 (-)NCBIT2T-CHM13v2.0
Phlda2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397143,055,282 - 143,056,882 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7143,055,282 - 143,056,887 (-)EnsemblGRCm39 Ensembl
GRCm387143,501,545 - 143,503,145 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7143,501,545 - 143,503,150 (-)EnsemblGRCm38mm10GRCm38
MGSCv377150,687,453 - 150,688,429 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367143,310,938 - 143,311,914 (-)NCBIMGSCv36mm8
Celera7143,257,236 - 143,258,212 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.23NCBI
Phlda2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81208,126,302 - 208,127,241 (-)NCBIGRCr8
mRatBN7.21198,696,897 - 198,699,292 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1198,696,897 - 198,697,836 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1207,075,520 - 207,076,464 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01214,162,079 - 214,163,024 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01206,836,218 - 206,837,163 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,701,345 - 216,704,479 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,702,319 - 216,703,534 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01223,562,616 - 223,564,645 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41203,878,093 - 203,879,038 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11204,031,653 - 204,032,469 (-)NCBI
Celera1196,265,214 - 196,266,153 (-)NCBICelera
Cytogenetic Map1q42NCBI
Phlda2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542214,617,794 - 14,619,595 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542214,617,794 - 14,619,595 (-)NCBIChiLan1.0ChiLan1.0
PHLDA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1845,509,931 - 45,510,389 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01847,580,136 - 47,580,554 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1847,580,136 - 47,580,531 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11847,025,433 - 47,025,891 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01846,608,113 - 46,608,570 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01847,354,692 - 47,355,110 (-)NCBIUU_Cfam_GSD_1.0
PHLDA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl22,057,681 - 2,058,694 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.122,057,679 - 2,058,675 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22427,845 - 428,693 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHLDA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112,741,039 - 2,743,107 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12,741,544 - 2,742,002 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603899,941,908 - 99,946,453 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phlda2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476715,679,481 - 15,679,876 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476715,678,897 - 15,680,656 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034931962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_034931962   ⟹   XP_034787853
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v295,339,639 - 5,340,703 (-)NCBI
NHGRI_mPanPan1114,551,543 - 4,552,607 (-)NCBI
Mhudiblu_PPA_v0112,953,864 - 2,954,923 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034787853 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034787853   ⟸   XM_034931962


Additional Information

Database Acc Id Source(s)
NCBI Gene PHLDA2 ENTREZGENE