Prdx2-ps1 (peroxiredoxin 2, pseudogene 1) - Rat Genome Database

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Gene: Prdx2-ps1 (peroxiredoxin 2, pseudogene 1) Mus musculus
Analyze
Symbol: Prdx2-ps1
Name: peroxiredoxin 2, pseudogene 1
RGD ID: 2309262
MGI Page MGI
Description: INTERACTS WITH clofibrate
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG633295; Gm7110; ll-2; Prx; Tdpx-; Tdpx-ps1; thioredoxin peroxidase, pseudogene 1
Related Functional Gene: Prdx2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39199,717,924 - 99,718,821 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl199,718,154 - 99,718,750 (-)EnsemblGRCm39 Ensembl
GRCm38199,790,199 - 99,791,096 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl199,790,429 - 99,791,025 (-)EnsemblGRCm38mm10GRCm38
MGSCv371101,686,809 - 101,687,673 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361101,620,580 - 101,621,176 (-)NCBIMGSCv36mm8
Celera1102,675,455 - 102,676,324 (-)NCBICelera
Cytogenetic Map1E1.1NCBI
cM Map148.23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Prdx2-ps1Mouseclofibrate decreases expressionEXP 6480464Clofibrate results in decreased expression of PRDX2-PS1 mRNACTDPMID:17585979


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:9714804  



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Variants in Prdx2-ps1
90 total Variants

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:177
Interacting mature miRNAs:187
Transcripts:ENSMUST00000117372
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 46 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
15039333Nmrs1_mNAFLD-associated magnetic resonance shift 1 (mouse)189786512123786512Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
10045976Tir6_mtrypanosome infection response 6 (mouse)Not determined193536855120529678Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
4141627Bwq7_mbody weight, QTL 7 (mouse)Not determined192940909124497796Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse

1 to 10 of 46 rows
RH136582  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38199,790,389 - 99,790,590UniSTSGRCm38
MGSCv371101,686,966 - 101,687,167UniSTSGRCm37
Celera1102,675,643 - 102,675,844UniSTS
Cytogenetic Map1E1.1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map8C3UniSTS
cM Map836.0UniSTS
UniSTS:234183  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38199,790,756 - 99,790,852UniSTSGRCm38
MGSCv371101,687,333 - 101,687,429UniSTSGRCm37
Celera1102,676,010 - 102,676,106UniSTS
Cytogenetic Map1E1.1UniSTS
Cytogenetic Map8C3UniSTS
cM Map836.0UniSTS
X82067  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,974,103 - 84,974,204UniSTSGRCm38
GRCm38199,790,310 - 99,790,411UniSTSGRCm38
MGSCv371101,686,887 - 101,686,988UniSTSGRCm37
MGSCv37887,498,002 - 87,498,103UniSTSGRCm37
Celera889,268,782 - 89,268,883UniSTS
Celera1102,675,564 - 102,675,665UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map1E1.1UniSTS
Cytogenetic Map17A3.3UniSTS
cM Map836.0UniSTS
Whitehead/MRC_RH81011.77UniSTS
Tdpx-ps2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38199,790,252 - 99,790,610UniSTSGRCm38
MGSCv371101,686,829 - 101,687,187UniSTSGRCm37
Celera1102,675,506 - 102,675,864UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map1E1.1UniSTS
Cytogenetic Map8C3UniSTS
cM Map472.0UniSTS
cM MapUN UniSTS
Tdpx-ps1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38199,790,522 - 99,791,086UniSTSGRCm38
MGSCv371101,687,099 - 101,687,663UniSTSGRCm37
Cytogenetic Map8C3UniSTS
Cytogenetic Map1E1.1UniSTS
cM MapUN UniSTS






RefSeq Transcripts NG_018482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF032714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000117372
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl199,718,154 - 99,718,750 (-)Ensembl
GRCm38.p6 Ensembl199,790,429 - 99,791,025 (-)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000082431 Ensembl
MGD MGI:1321403 ENTREZGENE
NCBI Gene Prdx2-ps1 ENTREZGENE
PhenoGen Prdx2-ps1 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Prdx2-ps1  peroxiredoxin 2, pseudogene 1  Tdpx-ps1  thioredoxin peroxidase, pseudogene 1  Symbol and/or name change 5135510 APPROVED
2024-08-21 Tdpx-ps1  thioredoxin peroxidase, pseudogene 1  Prdx2-ps1  peroxiredoxin 2, pseudogene 1  Symbol and/or name change 5135510 APPROVED
2019-02-26 Prdx2-ps1  peroxiredoxin 2, pseudogene 1  Tdpx-ps1  thioredoxin peroxidase, pseudogene 1  Symbol and/or name change 5135510 APPROVED
2015-05-21 Tdpx-ps1  thioredoxin peroxidase, pseudogene 1  Tdpx-ps1  thioredoxin peroxidase, pseudogene 1  Data merged from RGD:1617598 737654 PROVISIONAL
2015-02-24 Tdpx-ps1  thioredoxin peroxidase, pseudogene 1  Gm7110  predicted gene 7110  Symbol and/or name change 5135510 APPROVED