Rpl27rt (ribosomal protein L29, retrotransposed) - Rat Genome Database

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Gene: Rpl27rt (ribosomal protein L29, retrotransposed) Mus musculus
Analyze
No known orthologs.
Symbol: Rpl27rt
Name: ribosomal protein L29, retrotransposed
RGD ID: 2299797
MGI Page MGI
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in cytosolic ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL29 (ribosomal protein L29).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 100041859; Gm3550; hypothetical protein LOC100041859
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Rpl29  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391834,870,421 - 34,871,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1834,869,412 - 34,871,067 (+)EnsemblGRCm39 Ensembl
GRCm381834,737,368 - 34,738,014 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1834,736,359 - 34,738,014 (+)EnsemblGRCm38mm10GRCm38
MGSCv371834,897,069 - 34,897,668 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361834,896,999 - 34,897,712 (+)NCBIMGSCv36mm8
Celera1835,191,789 - 35,192,388 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.71NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl27rtMousecytoplasmic translation involved_inIBAPANTHER:PTN000306390 and SGD:S0000064372290270 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl27rtMousecytosolic large ribosomal subunit part_ofIBAPANTHER:PTN000306390 more ...2290270 GO_CentralGO_REF:0000033
Rpl27rtMousecytosolic large ribosomal subunit part_ofISORpl29 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Rpl27rtMousecytosolic large ribosomal subunit part_ofISOUniProtKB:P479142290270 GO_CentralGO_REF:0000119
Rpl27rtMousecytosolic ribosome located_inISOUniProtKB:P479142290270 GO_CentralGO_REF:0000119
Rpl27rtMouseribosome located_inISORpl29 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rpl27rtMousestructural constituent of ribosome enablesISOUniProtKB:P479142290270 GO_CentralGO_REF:0000119
Rpl27rtMousestructural constituent of ribosome enablesIBAPANTHER:PTN000306390 more ...2290270 GO_CentralGO_REF:0000033


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:21873635  



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Variants in Rpl27rt
25 total Variants

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:164
Interacting mature miRNAs:167
Transcripts:ENSMUST00000105038
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 29 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse

1 to 10 of 29 rows
UniSTS:237772  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381834,735,716 - 34,735,974UniSTSGRCm38
MGSCv371834,895,370 - 34,895,628UniSTSGRCm37
Celera1835,190,090 - 35,190,348UniSTS
Cytogenetic Map18B1UniSTS
cM Map1815.0UniSTS







Ensembl Acc Id: ENSMUST00000105038   ⟹   ENSMUSP00000100655
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1834,869,412 - 34,871,067 (+)Ensembl
GRCm38.p6 Ensembl1834,736,359 - 34,738,014 (+)Ensembl
RefSeq Acc Id: XM_001477476
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv371834,897,069 - 34,897,668 (+)RGD
RefSeq Acc Id: XM_003086090
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera1835,191,789 - 35,192,388 (+)RGD
GenBank Protein EDK97112 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000100655.3
Ensembl Acc Id: ENSMUSP00000100655   ⟸   ENSMUST00000105038

Name Modeler Protein Id AA Range Protein Structure
AF-W4VSN7-F1-model_v2 AlphaFold W4VSN7 1-160 view protein structure



1 to 11 of 11 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000078240 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000105038.3 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1730 UniProtKB/TrEMBL
InterPro Ribosomal_L29e UniProtKB/TrEMBL
MGD MGI:3781727 ENTREZGENE
NCBI Gene 100041859 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L29 UniProtKB/TrEMBL
  PTHR12884 UniProtKB/TrEMBL
Pfam Ribosomal_L29e UniProtKB/TrEMBL
PhenoGen Rpl27rt PhenoGen
UniProt W4VSN7_MOUSE UniProtKB/TrEMBL
1 to 11 of 11 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-08 Rpl27rt  ribosomal protein L29, retrotransposed  Gm3550  predicted gene 3550  Symbol and/or name updated 27372883 PROVISIONAL