HOTAIR (HOX transcript antisense RNA)

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Gene: HOTAIR (HOX transcript antisense RNA) Homo sapiens

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Symbol:

HOTAIR

Name:

HOX transcript antisense RNA

RGD ID:

2293809

HGNC Page

HGNC:33510

Description:

Enables dsDNA-RNA triple helix-forming chromatin adaptor activity and miRNA inhibitor activity via base-pairing. Involved in lncRNA-mediated post-transcriptional gene silencing; negative regulation of transcription by RNA polymerase II; and replicative senescence. Predicted to be located in chromosome. Predicted to be active in nucleus. Biomarker of congestive heart failure.

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

REVIEWED

Previously known as:

FLJ41747; HOXAS; HOXC-AS4; HOXC11-AS1; NCRNA00072

RGD Orthologs

Mouse

Dog

Alliance Orthologs

More Info

more info ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	53,962,308 - 53,975,055 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	54,356,096 - 54,368,738 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	52,642,496 - 52,648,727 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	54,005,698 - 54,012,116 (-)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	51,393,318 - 51,405,968 (-)	NCBI		HuRef
CHM1_1	12	54,322,782 - 54,335,429 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cardiomegaly (ISO)

congestive heart failure (IEP)

hepatocellular carcinoma (EXP)

Neoplasm Recurrence, Local (EXP)

Nerve Degeneration (EXP)

Neurodevelopmental Disorders (IAGP)

Parkinsonism (EXP)

Stomach Neoplasms (EXP)

Uterine Cervical Neoplasms (EXP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

17beta-estradiol (EXP)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

aflatoxin B1 (EXP)

andrographolide (EXP,ISO)

antirheumatic drug (EXP)

arsane (EXP)

arsenic atom (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (EXP)

bisphenol A (EXP)

cantharidin (EXP)

cisplatin (EXP)

diethylstilbestrol (EXP)

doxorubicin (EXP)

entinostat (EXP)

enzalutamide (EXP)

lead diacetate (ISO)

N-methyl-4-phenylpyridinium (EXP)

nickel atom (EXP)

paraquat (EXP)

sodium arsenite (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

heterochromatin formation (IEA)

hindlimb morphogenesis (ISO)

lncRNA-mediated post-transcriptional gene silencing (IDA,IMP)

negative regulation of transcription by RNA polymerase II (IMP)

positive regulation of cell population proliferation (IMP)

post-anal tail morphogenesis (ISO)

regulatory ncRNA-mediated heterochromatin formation (ISO)

replicative senescence (IMP)

skeletal system development (ISO)

Cellular Component

chromosome (ISO)

nucleus (ISO)

Molecular Function

dsDNA-RNA triple helix-forming chromatin adaptor activity (IDA)

miRNA inhibitor activity via base-pairing (IDA,IMP)

protein binding (ISO)

protein-containing complex binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Long noncoding RNA dysregulation in ischemic heart failure.	Greco S, etal., J Transl Med. 2016 Jun 18;14(1):183. doi: 10.1186/s12967-016-0926-5.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16344560	PMID:17604716	PMID:17604720	PMID:19571010	PMID:20393566	PMID:20616235	PMID:20864820	PMID:20930520	PMID:21112873	PMID:21123648	PMID:21138898	PMID:21278485
PMID:21327457	PMID:21345374	PMID:21393997	PMID:21496275	PMID:21507358	PMID:21637793	PMID:21732412	PMID:21862635	PMID:21963238	PMID:22258453	PMID:22289527	PMID:22375145
PMID:22386265	PMID:22614017	PMID:22659877	PMID:23124417	PMID:23141928	PMID:23292722	PMID:23375982	PMID:23595112	PMID:23624935	PMID:23668363	PMID:23717443	PMID:23743197
PMID:23862139	PMID:23888369	PMID:23898077	PMID:24022190	PMID:24022994	PMID:24103700	PMID:24118380	PMID:24151120	PMID:24155936	PMID:24203894	PMID:24258260	PMID:24285342
PMID:24320048	PMID:24326307	PMID:24533973	PMID:24583926	PMID:24591352	PMID:24662839	PMID:24663081	PMID:24722995	PMID:24758900	PMID:24775712	PMID:24788237	PMID:24788418
PMID:24840737	PMID:24935377	PMID:24953832	PMID:25010625	PMID:25017366	PMID:25030736	PMID:25063030	PMID:25070049	PMID:25085602	PMID:25099764	PMID:25149152	PMID:25157956
PMID:25168368	PMID:25280565	PMID:25303230	PMID:25328122	PMID:25334066	PMID:25385164	PMID:25405331	PMID:25428914	PMID:25432874	PMID:25447409	PMID:25456707	PMID:25476857
PMID:25547435	PMID:25586347	PMID:25612617	PMID:25640751	PMID:25739705	PMID:25754087	PMID:25762744	PMID:25796453	PMID:25824616	PMID:25855382	PMID:25866246	PMID:25883211
PMID:25901533	PMID:25928008	PMID:25968902	PMID:25979172	PMID:25980897	PMID:25994132	PMID:26033707	PMID:26036760	PMID:26088446	PMID:26111795	PMID:26117268	PMID:26136075
PMID:26172293	PMID:26187665	PMID:26238267	PMID:26255135	PMID:26261618	PMID:26323944	PMID:26364613	PMID:26384301	PMID:26411689	PMID:26469956	PMID:26482614	PMID:26497652
PMID:26523512	PMID:26547792	PMID:26549670	PMID:26577852	PMID:26592246	PMID:26648066	PMID:26658322	PMID:26707824	PMID:26717040	PMID:26719542	PMID:26729820	PMID:26781446
PMID:26823726	PMID:26823733	PMID:26826873	PMID:26868332	PMID:26962687	PMID:26967389	PMID:27010768	PMID:27028998	PMID:27041570	PMID:27121316	PMID:27122348	PMID:27146324
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PMID:27941336	PMID:27965458	PMID:27966488	PMID:27977683	PMID:27979710	PMID:28067428	PMID:28069441	PMID:28083786	PMID:28129115	PMID:28167697	PMID:28177890	PMID:28207735
PMID:28223190	PMID:28235488	PMID:28251884	PMID:28259691	PMID:28260072	PMID:28314879	PMID:28342055	PMID:28351094	PMID:28364379	PMID:28376832	PMID:28407576	PMID:28415631
PMID:28441714	PMID:28445933	PMID:28476883	PMID:28600545	PMID:28615347	PMID:28641521	PMID:28641698	PMID:28671703	PMID:28730284	PMID:28731193	PMID:28745272	PMID:28755392
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PMID:29717517	PMID:29808247	PMID:29846771	PMID:29856087	PMID:29907764	PMID:29932240	PMID:29944905	PMID:29952959	PMID:29974853	PMID:29997370	PMID:30025562	PMID:30030888
PMID:30047193	PMID:30053324	PMID:30105850	PMID:30111807	PMID:30126531	PMID:30138895	PMID:30154526	PMID:30172749	PMID:30195653	PMID:30205383	PMID:30239553	PMID:30248209
PMID:30275757	PMID:30338929	PMID:30355300	PMID:30367466	PMID:30402836	PMID:30402866	PMID:30429228	PMID:30431069	PMID:30443761	PMID:30468285	PMID:30541551	PMID:30556621
PMID:30557546	PMID:30570864	PMID:30600442	PMID:30609034	PMID:30635945	PMID:30668267	PMID:30720199	PMID:30742932	PMID:30827324	PMID:30941992	PMID:30943982	PMID:30963568
PMID:31038787	PMID:31072041	PMID:31113870	PMID:31119441	PMID:31171714	PMID:31173294	PMID:31180050	PMID:31188529	PMID:31207321	PMID:31269585	PMID:31281803	PMID:31297902
PMID:31298326	PMID:31366320	PMID:31376409	PMID:31389660	PMID:31399844	PMID:31414734	PMID:31432188	PMID:31433231	PMID:31478571	PMID:31481088	PMID:31485665	PMID:31527078
PMID:31539110	PMID:31637716	PMID:31642563	PMID:31654274	PMID:31672084	PMID:31694696	PMID:31759985	PMID:31796041	PMID:31799674	PMID:31820855	PMID:31850700	PMID:31858569
PMID:31882666	PMID:31901481	PMID:31940242	PMID:31943306	PMID:31953347	PMID:31974341	PMID:31986414	PMID:31995261	PMID:32036581	PMID:32041748	PMID:32058948	PMID:32062551
PMID:32090437	PMID:32090865	PMID:32115425	PMID:32124799	PMID:32144238	PMID:32176624	PMID:32245498	PMID:32248643	PMID:32270696	PMID:32279420	PMID:32320706	PMID:32364078
PMID:32374522	PMID:32394637	PMID:32448431	PMID:32454167	PMID:32462038	PMID:32650720	PMID:32650779	PMID:32653028	PMID:32657763	PMID:32661201	PMID:32683208	PMID:32700738
PMID:32743678	PMID:32755793	PMID:32757663	PMID:32771526	PMID:32773006	PMID:32781191	PMID:32901358	PMID:32937635	PMID:32940681	PMID:32951010	PMID:33024272	PMID:33028884
PMID:33074585	PMID:33103728	PMID:33104019	PMID:33107391	PMID:33150781	PMID:33157157	PMID:33158813	PMID:33241756	PMID:33264034	PMID:33294032	PMID:33302562	PMID:33303026
PMID:33313721	PMID:33358212	PMID:33410422	PMID:33446111	PMID:33467979	PMID:33502949	PMID:33527791	PMID:33538241	PMID:33667269	PMID:33670447	PMID:33721460	PMID:33721916
PMID:33724292	PMID:33753203	PMID:33797934	PMID:33809601	PMID:33843021	PMID:33941772	PMID:33960111	PMID:34192661	PMID:34208964	PMID:34266873	PMID:34266995	PMID:34282279
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PMID:35121112	PMID:35176085	PMID:35227173	PMID:35245884	PMID:35248107	PMID:35292358	PMID:35292404	PMID:35321026	PMID:35347094	PMID:35359879	PMID:35398161	PMID:35418162
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PMID:36593385	PMID:36635778	PMID:36640665	PMID:36734383	PMID:36765482	PMID:36924407	PMID:36972141	PMID:36980864	PMID:36991356	PMID:36997931	PMID:37073806	PMID:37184696
PMID:37199906	PMID:37294527	PMID:37307069	PMID:37308974	PMID:37621132	PMID:37713847	PMID:37805962	PMID:37846544	PMID:37879289	PMID:37880710	PMID:37904709	PMID:38000201
PMID:38015524	PMID:38071204	PMID:38087305	PMID:38114755	PMID:38238652	PMID:38250607	PMID:38334898	PMID:38366205	PMID:38587571	PMID:38696320	PMID:38754347	PMID:38958113
PMID:39273054

Genomics

Comparative Map Data

HOTAIR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	53,962,308 - 53,975,055 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	54,356,096 - 54,368,738 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	52,642,496 - 52,648,727 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	54,005,698 - 54,012,116 (-)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	51,393,318 - 51,405,968 (-)	NCBI		HuRef
CHM1_1	12	54,322,782 - 54,335,429 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI		T2T-CHM13v2.0

Hotair
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	102,852,497 - 102,856,381 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	102,852,494 - 102,862,817 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	102,944,062 - 102,947,946 (-)	ENTREZGENE	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	102,944,062 - 102,947,730 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	102,774,493 - 102,778,377 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	15	105,104,992 - 105,108,876 (-)	NCBI		Celera
Cytogenetic Map	15	F3	NCBI
cM Map	15	58.01	NCBI

HOTAIR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	1,296,506 - 1,300,023 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	44,949,593 - 44,953,110 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	1,300,178 - 1,303,696 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	27	1,317,847 - 1,321,364 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	1,299,422 - 1,302,939 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	45,353,215 - 45,356,732 (-)	NCBI		UU_Cfam_GSD_1.0

Variants

Variants in HOTAIR
17 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 12q13.13(chr12:53224024-54222450)x1	copy number loss	See cases [RCV000052812]	Chr12:53224024..54222450 [GRCh38] Chr12:53617808..54616234 [GRCh37] Chr12:51904075..52902501 [NCBI36] Chr12:12q13.13	pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3	copy number gain	See cases [RCV000139555]	Chr12:121271..133196807 [GRCh38] Chr12:282465..133773393 [GRCh37] Chr12:100698..132283466 [NCBI36] Chr12:12p13.33-q24.33	pathogenic
GRCh38/hg38 12q13.13(chr12:53841686-54136856)x3	copy number gain	See cases [RCV000141162]	Chr12:53841686..54136856 [GRCh38] Chr12:54235470..54530640 [GRCh37] Chr12:52521737..52816907 [NCBI36] Chr12:12q13.13	likely benign
GRCh38/hg38 12q13.13-13.3(chr12:53420606-56202942)x3	copy number gain	See cases [RCV000141435]	Chr12:53420606..56202942 [GRCh38] Chr12:53814390..56596726 [GRCh37] Chr12:52100657..54882993 [NCBI36] Chr12:12q13.13-13.3	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3	copy number gain	See cases [RCV000258805]	Chr12:1..133851895 [GRCh37] Chr12:12p13.33-q24.33	pathogenic\|likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3	copy number gain	See cases [RCV000510482]	Chr12:173787..133777902 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)	copy number gain	See cases [RCV000511643]	Chr12:173787..133777902 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
NC_000012.11:g.26370251_54361538inv	inversion	not specified [RCV000714265]	Chr12:26370251..54361538 [GRCh37] Chr12:12p12.1-q13.13	uncertain significance
NM_014212.4(HOXC11):c.278A>G (p.Tyr93Cys)	single nucleotide variant	not specified [RCV004317498]	Chr12:53973519 [GRCh38] Chr12:54367303 [GRCh37] Chr12:12q13.13	uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3	copy number gain	not provided [RCV000750246]	Chr12:191619..133777645 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3	copy number gain	not provided [RCV000750253]	Chr12:621220..133779118 [GRCh37] Chr12:12p13.33-q24.33	pathogenic
NM_014212.4(HOXC11):c.191C>T (p.Ser64Leu)	single nucleotide variant	not specified [RCV004282038]	Chr12:53973432 [GRCh38] Chr12:54367216 [GRCh37] Chr12:12q13.13	uncertain significance
Single allele	deletion	Neurodevelopmental disorder [RCV000787381]	Chr12:53784698..54741363 [GRCh37] Chr12:12q13.13	pathogenic
NM_014212.4(HOXC11):c.569C>G (p.Ala190Gly)	single nucleotide variant	not specified [RCV004212915]	Chr12:53973810 [GRCh38] Chr12:54367594 [GRCh37] Chr12:12q13.13	likely benign
NM_014212.4(HOXC11):c.404C>G (p.Ala135Gly)	single nucleotide variant	not specified [RCV004236080]	Chr12:53973645 [GRCh38] Chr12:54367429 [GRCh37] Chr12:12q13.13	uncertain significance
NM_014212.4(HOXC11):c.574C>G (p.Arg192Gly)	single nucleotide variant	not specified [RCV004096948]	Chr12:53973815 [GRCh38] Chr12:54367599 [GRCh37] Chr12:12q13.13	uncertain significance
NM_014212.4(HOXC11):c.541C>T (p.Pro181Ser)	single nucleotide variant	not specified [RCV004239602]	Chr12:53973782 [GRCh38] Chr12:54367566 [GRCh37] Chr12:12q13.13	uncertain significance
NM_014212.4(HOXC11):c.406G>T (p.Gly136Cys)	single nucleotide variant	not specified [RCV004108786]	Chr12:53973647 [GRCh38] Chr12:54367431 [GRCh37] Chr12:12q13.13	uncertain significance
NM_014212.4(HOXC11):c.487G>C (p.Gly163Arg)	single nucleotide variant	not specified [RCV004073027]	Chr12:53973728 [GRCh38] Chr12:54367512 [GRCh37] Chr12:12q13.13	uncertain significance
NM_014212.4(HOXC11):c.523G>A (p.Gly175Ser)	single nucleotide variant	not specified [RCV004219539]	Chr12:53973764 [GRCh38] Chr12:54367548 [GRCh37] Chr12:12q13.13	uncertain significance
NM_014212.4(HOXC11):c.502G>A (p.Glu168Lys)	single nucleotide variant	not specified [RCV004262402]	Chr12:53973743 [GRCh38] Chr12:54367527 [GRCh37] Chr12:12q13.13	uncertain significance
NM_014212.4(HOXC11):c.376C>A (p.His126Asn)	single nucleotide variant	not specified [RCV004351133]	Chr12:53973617 [GRCh38] Chr12:54367401 [GRCh37] Chr12:12q13.13	uncertain significance
NM_014212.4(HOXC11):c.208G>A (p.Val70Ile)	single nucleotide variant	not specified [RCV004402041]	Chr12:53973449 [GRCh38] Chr12:54367233 [GRCh37] Chr12:12q13.13	uncertain significance
NM_014212.4(HOXC11):c.359C>T (p.Ser120Phe)	single nucleotide variant	not specified [RCV004402042]	Chr12:53973600 [GRCh38] Chr12:54367384 [GRCh37] Chr12:12q13.13	uncertain significance
NM_014212.4(HOXC11):c.374A>G (p.His125Arg)	single nucleotide variant	not specified [RCV004402043]	Chr12:53973615 [GRCh38] Chr12:54367399 [GRCh37] Chr12:12q13.13	uncertain significance
NM_014212.4(HOXC11):c.70G>C (p.Glu24Gln)	single nucleotide variant	not specified [RCV004402045]	Chr12:53973311 [GRCh38] Chr12:54367095 [GRCh37] Chr12:12q13.13	uncertain significance
NM_014212.4(HOXC11):c.93C>A (p.Asn31Lys)	single nucleotide variant	not specified [RCV004402047]	Chr12:53973334 [GRCh38] Chr12:54367118 [GRCh37] Chr12:12q13.13	uncertain significance
NM_014212.4(HOXC11):c.98A>G (p.Tyr33Cys)	single nucleotide variant	not specified [RCV004633024]	Chr12:53973339 [GRCh38] Chr12:54367123 [GRCh37] Chr12:12q13.13	uncertain significance

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1307
Count of miRNA genes:	653
Interacting mature miRNAs:	750
Transcripts:	ENST00000424518, ENST00000425595, ENST00000439545, ENST00000453875, ENST00000455246
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCh38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
407315203	GWAS964179_H	phosphatidylinositol measurement QTL GWAS964179 (human)		3e-08	phosphatidylinositol measurement		12	53970160	53970161	Human
407034023	GWAS682999_H	heel bone mineral density QTL GWAS682999 (human)		4e-14	heel bone mineral density	bone mineral density (CMO:0001226)	12	53963972	53963974	Human
407064364	GWAS713340_H	hemorrhoid QTL GWAS713340 (human)		7e-10	hemorrhoid		12	53966448	53966449	Human

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system
962	1417	2786	1356	2524	618	1152	2	147	672	104	2074	4293	3626	49	1643	798	1393	785	55

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_003716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_047517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_047518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_186250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA399272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC012531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK123741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF109906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA567507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA905601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA907429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ926657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HG975398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MF999225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OK349331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000424518

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,962,312 - 53,974,954 (-)	Ensembl

Ensembl Acc Id:

ENST00000425595

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,963,802 - 53,966,630 (-)	Ensembl

Ensembl Acc Id:

ENST00000439545

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,964,085 - 53,968,914 (-)	Ensembl

Ensembl Acc Id:

ENST00000453875

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,963,901 - 53,967,355 (-)	Ensembl

Ensembl Acc Id:

ENST00000455246

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,963,749 - 53,974,956 (-)	Ensembl

Ensembl Acc Id:

ENST00000698798

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,967,269 - 53,973,014 (-)	Ensembl

Ensembl Acc Id:

ENST00000710355

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,962,312 - 53,966,576 (-)	Ensembl

Ensembl Acc Id:

ENST00000717832

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,962,308 - 53,975,055 (-)	Ensembl

Ensembl Acc Id:

ENST00000717833

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,962,312 - 53,974,600 (-)	Ensembl

Ensembl Acc Id:

ENST00000717834

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,962,312 - 53,974,928 (-)	Ensembl

Ensembl Acc Id:

ENST00000717835

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,962,308 - 53,967,753 (-)	Ensembl

Ensembl Acc Id:

ENST00000717836

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,962,376 - 53,968,721 (-)	Ensembl

Ensembl Acc Id:

ENST00000774202

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,962,315 - 53,974,634 (-)	Ensembl

Ensembl Acc Id:

ENST00000774203

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	12	53,966,121 - 53,967,379 (-)	Ensembl

RefSeq Acc Id:

NR_003716

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,968,671 (-)	NCBI
GRCh37	12	54,356,092 - 54,368,740 (-)	NCBI
Build 36	12	52,642,496 - 52,648,727 (-)	NCBI Archive
Celera	12	54,005,698 - 54,012,116 (-)	RGD
HuRef	12	51,393,318 - 51,405,968 (-)	NCBI
CHM1_1	12	54,322,782 - 54,329,229 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,934,163 (-)	NCBI

Sequence:

show sequence

CCTCCAGGCCCTGCCTTCTGCCTGCACATTCTGCCCTGATTTCCGGAACCTGGAAGCCTAGGCA
GGCAGTGGGGAACTCTGACTCGCCTGTGCTCTGGAGCTTGATCCGAAAGCTTCCACAGTGAGGA
CTGCTCCGTGGGGGTAAGAGAGCACCAGGCACTGAGGCCTGGGAGTTCCACAGACCAACACCCC
TGCTCCTGGCGGCTCCCACCCGGGACTTAGACCCTCAGGTCCCTAATATCCCGGAGGTGCTCTC
AATCAGAAAGGTCCTGCTCCGCTTCGCAGTGGAATGGAACGGATTTAGAAGCCTGCAGTAGGGG
AGTGGGGAGTGGAGAGAGGGAGCCCAGAGTTACAGACGGCGGCGAGAGGAAGGAGGGGCGTCTT
TATTTTTTTAAGGCCCCAAAGAGTCTGATGTTTACAAGACCAGAAATGCCACGGCCGCGTCCTG
GCAGAGAAAAGGCTGAAATGGAGGACCGGCGCCTTCCTTATAAGTATGCACATTGGCGAGAGAA
GTGCTGCAACCTAAACCAGCAATTACACCCAAGCTCGTTGGGGCCTAAGCCAGTACCGACCTGG
TAGAAAAAGCAACCACGAAGCTAGAGAGAGAGCCAGAGGAGGGAAGAGAGCGCCAGACGAAGGT
GAAAGCGAACCACGCAGAGAAATGCAGGCAAGGGAGCAAGGCGGCAGTTCCCGGAACAAACGTG
GCAGAGGGCAAGACGGGCACTCACAGACAGAGGTTTATGTATTTTTATTTTTTAAAATCTGATT
TGGTGTTCCATGAGGAAAAGGGAAAATCTAGGGAACGGGAGTACAGAGAGAATAATCCGGGTCC
TAGCTCGCCACATGAACGCCCAGAGAACGCTGGAAAAACCTGAGCGGGTGCCGGGGCAGCACCC
GGCTCGGGTCAGCCACTGCCCCACACCGGGCCCACCAAGCCCCGCCCCTCGCGGCCACCGGGGC
TTCCTTGCTCTTCTTATCATCTCCATCTTTATGATGAGGCTTGTTAACAAGACCAGAGAGCTGG
CCAAGCACCTCTATCTCAGCCGCGCCCGCTCAGCCGAGCAGCGGTCGGTGGGGGGACTGGGAGG
CGCTAATTAATTGATTCCTTTGGACTGTAAAATATGGCGGCGTCTACACGGAACCCATGGACTC
ATAAACAATATATCTGTTGGGCGTGAGTGCACTGTCTCTCAAATAATTTTTCCATAGGCAAATG
TCAGAGGGTTCTGGATTTTTAGTTGCTAAGGAAAGATCCAAATGGGACCAATTTTAGGAGGCCC
AAACAGAGTCCGTTCAGTGTCAGAAAATGCTTCCCCAAAGGGGTTGGGAGTGTGTTTTGTTGGA
AAAAAGCTTGGGTTATAGGAAAGCCTTTCCCTGCTACTTGTGTAGACCCAGCCCAATTTAAGAA
TTACAAGGAAGCGAAGGGGTTGTGTAGGCCGGAAGCCTCTCTGTCCCGGCTGGATGCAGGGGAC
TTGAGCTGCTCCGGAATTTGAGAGGAACATAGAAGCAAAGGTCCAGCCTTTGCTTCGTGCTGAT
TCCTAGACTTAAGATTCAAAAACAAATTTTTAAAAGTGAAACCAGCCCTAGCCTTTGGAAGCTC
TTGAAGGTTCAGCACCCACCCAGGAATCCACCTGCCTGTTACACGCCTCTCCAAGACACAGTGG
CACCGCTTTTCTAACTGGCAGCACAGAGCAACTCTATAATATGCTTATATTAGGTCTAGAAGAA
TGCATCTTGAGACACATGGGTAACCTAATTATATAATGCTTGTTCCATACAGGAGTGATTATGC
AGTGGGACCCTGCTGCAAACGGGACTTTGCACTCTAAATATAGACCCCAGCTTGGGACAAAAGT
TGCAGTAGAAAAATAGACATAGGAGAACACTTAAATAAGTGATGCATGTAGACACAGAAGGGGT
ATTTAAAAGACAGAAATAATAGAAGTACAGAAGAACAGAAAAAAAATCAGCAGATGGAGATTAC
CATTCCCAATGCCTGAACTTCCTCCTGCTATTAAGATTGCTAGAGAATTGTGTCTTAAACAGTT
CATGAACCCAGAAGAATGCAATTTCAATGTATTTAGTACACACACAGTATGTATATAAACACAA
CTCACAGAATATATTTTCCATACATTGGGTAGGTATGCACTTTGTGTATATATAATAATGTATT
TTCCATGCAGTTTTAAAATGTAGATATATTAATATCTGGATGCATTTTCTGTGCACTGGTTTTA
TATGCCTTATGGAGTATATACTCACATGTAGCTAAATAGACTCAGGACTGCACATTCCTTGTGT
AGGTTGTGTGTGTGTGGTGGTTTTATGCATAAATAAAGTTTTACATGTGGTGAATATAAA

hide sequence

RefSeq Acc Id:

NR_047517

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI
HuRef	12	51,393,318 - 51,405,968 (-)	NCBI
CHM1_1	12	54,322,782 - 54,335,429 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI

Sequence:

show sequence

CCAGTTCTCAGGCGAGAGCCGCGGCTGACAGGGTCTGGGACAGAAGGAAAGCCCTCCAGCCTCC
AGGCCCTGCCTTCTGCCTGCACATTCTGCCCTGATTTCCGGAACCTGGAAGCCTAGGCAGGCAG
TGGGGAACTCTGACTCGCCTGTGCTCTGGAGCTTGATCCGAAAGCTTCCACAGTGAGGACTGCT
CCGTGGGGGTAAGAGAGCACCAGGCACTGAGGCCTGGGAGTTCCACAGACCAACACCCCTGCTC
CTGGCGGCTCCCACCCGGGACTTAGACCCTCAGGTCCCTAATATCCCGGAGGTGCTCTCAATCA
GAAAGGTCCTGCTCCGCTTCGCAGTGGAATGGAACGGATTTAGAAGCCTGCAGTAGGGGAGTGG
GGAGTGGAGAGAGGGAGCCCAGAGTTACAGACGGCGGCGAGAGGAAGGAGGGGCGTCTTTATTT
TTTTAAGGCCCCAAAGAGTCTGATGTTTACAAGACCAGAAATGCCACGGCCGCGTCCTGGCAGA
GAAAAGGCTGAAATGGAGGACCGGCGCCTTCCTTATAAGCTCGTTGGGGCCTAAGCCAGTACCG
ACCTGGTAGAAAAAGCAACCACGAAGCTAGAGAGAGAGCCAGAGGAGGGAAGAGAGCGCCAGAC
GAAGGTGAAAGCGAACCACGCAGAGAAATGCAGGCAAGGGAGCAAGGCGGCAGTTCCCGGAACA
AACGTGGCAGAGGGCAAGACGGGCACTCACAGACAGAGGTTTATGTATTTTTATTTTTTAAAAT
CTGATTTGGTGTTCCATGAGGAAAAGGGAAAATCTAGGGAACGGGAGTACAGAGAGAATAATCC
GGGTCCTAGCTCGCCACATGAACGCCCAGAGAACGCTGGAAAAACCTGAGCGGGTGCCGGGGCA
GCACCCGGCTCGGGTCAGCCACTGCCCCACACCGGGCCCACCAAGCCCCGCCCCTCGCGGCCAC
CGGGGCTTCCTTGCTCTTCTTATCATCTCCATCTTTATGATGAGGCTTGTTAACAAGACCAGAG
AGCTGGCCAAGCACCTCTATCTCAGCCGCGCCCGCTCAGCCGAGCAGCGGTCGGTGGGGGGACT
GGGAGGCGCTAATTAATTGATTCCTTTGGACTGTAAAATATGGCGGCGTCTACACGGAACCCAT
GGACTCATAAACAATATATCTGTTGGGCGTGAGTGCACTGTCTCTCAAATAATTTTTCCATAGG
CAAATGTCAGAGGGTTCTGGATTTTTAGTTGCTAAGGAAAGATCCAAATGGGACCAATTTTAGG
AGGCCCAAACAGAGTCCGTTCAGTGTCAGAAAATGCTTCCCCAAAGGGGTTGGGAGTGTGTTTT
GTTGGAAAAAAGCTTGGGTTATAGGAAAGCCTTTCCCTGCTACTTGTGTAGACCCAGCCCAATT
TAAGAATTACAAGGAAGCGAAGGGGTTGTGTAGGCCGGAAGCCTCTCTGTCCCGGCTGGATGCA
GGGGACTTGAGCTGCTCCGGAATTTGAGAGGAACATAGAAGCAAAGGTCCAGCCTTTGCTTCGT
GCTGATTCCTAGACTTAAGATTCAAAAACAAATTTTTAAAAGTGAAACCAGCCCTAGCCTTTGG
AAGCTCTTGAAGGTTCAGCACCCACCCAGGAATCCACCTGCCTGTTACACGCCTCTCCAAGACA
CAGTGGCACCGCTTTTCTAACTGGCAGCACAGAGCAACTCTATAATATGCTTATATTAGGTCTA
GAAGAATGCATCTTGAGACACATGGGTAACCTAATTATATAATGCTTGTTCCATACAGGAGTGA
TTATGCAGTGGGACCCTGCTGCAAACGGGACTTTGCACTCTAAATATAGACCCCAGCTTGGGAC
AAAAGTTGCAGTAGAAAAATAGACATAGGAGAACACTTAAATAAGTGATGCATGTAGACACAGA
AGGGGTATTTAAAAGACAGAAATAATAGAAGTACAGAAGAACAGAAAAAAAATCAGCAGATGGA
GATTACCATTCCCAATGCCTGAACTTCCTCCTGCTATTAAGATTGCTAGAGAATTGTGTCTTAA
ACAGTTCATGAACCCAGAAGAATGCAATTTCAATGTATTTAGTACACACACAGTATGTATATAA
ACACAACTCACAGAATATATTTTCCATACATTGGGTAGGTATGCACTTTGTGTATATATAATAA
TGTATTTTCCATGCAGTTTTAAAATGTAGATATATTAATATCTGGATGCATTTTCTGTGCACTG
GTTTTATATGCCTTATGGAGTATATACTCACATGTAGCTAAATAGACTCAGGACTGCACATTCC
TTGTGTAGGTTGTGTGTGTGTGGTGGTTTTATGCATAAATAAAGTTTTACATGTGGTGAATATA
AA

hide sequence

RefSeq Acc Id:

NR_047518

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,968,671 (-)	NCBI
GRCh37	12	54,356,092 - 54,368,740 (-)	NCBI
HuRef	12	51,393,318 - 51,405,968 (-)	NCBI
CHM1_1	12	54,322,782 - 54,329,387 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,934,163 (-)	NCBI

Sequence:

show sequence

CTAATCAATCCAAAAGGAAAAAGAAAAGAGAGGGGTGGGAAGGCATGGGGTGAAAAACTTCAGG
TGACACAAAGCAAAAAGATTCCAGTCACCAAAAACAAAAACAAAAAAAAATCTTTTGCCCCCAG
CAAGAATCATTTGTTTGGGATCTGTTCCAGCCTCCAGGCCCTGCCTTCTGCCTGCACATTCTGC
CCTGATTTCCGGAACCTGGAAGCCTAGGCAGGCAGTGGGGAACTCTGACTCGCCTGTGCTCTGG
AGCTTGATCCGAAAGCTTCCACAGTGAGGACTGCTCCGTGGGGTCCTGCTCCGCTTCGCAGTGG
AATGGAACGGATTTAGAAGCCTGCAGTAGGGGAGTGGGGAGTGGAGAGAGGGAGCCCAGAGTTA
CAGACGGCGGCGAGAGGAGGGGCGTCTTTATTTTTTTAAGGCCCCAAAGAGTCTGATGTTTACA
AGACCAGAAATGCCACGGCCGCGTCCTGGCAGAGAAAAGGCTGAAATGGAGGACCGGCGCCTTC
CTTATAAGCTCGTTGGGGCCTAAGCCAGTACCGACCTGGTAGAAAAAGCAACCACGAAGCTAGA
GAGAGAGCCAGAGGAGGGAAGAGAGCGCCAGACGAAGGTGAAAGCGAACCACGCAGAGAAATGC
AGGCAAGGGAGCAAGGCGGCAGTTCCCGGAACAAACGTGGCAGAGGGCAAGACGGGCACTCACA
GACAGAGGTTTATGTATTTTTATTTTTTAAAATCTGATTTGGTGTTCCATGAGGAAAAGGGAAA
ATCTAGGGAACGGGAGTACAGAGAGAATAATCCGGGTCCTAGCTCGCCACATGAACGCCCAGAG
AACGCTGGAAAAACCTGAGCGGGTGCCGGGGCAGCACCCGGCTCGGGTCAGCCACTGCCCCACA
CCGGGCCCACCAAGCCCCGCCCCTCGCGGCCACCGGGGCTTCCTTGCTCTTCTTATCATCTCCA
TCTTTATGATGAGGCTTGTTAACAAGACCAGAGAGCTGGCCAAGCACCTCTATCTCAGCCGCGC
CCGCTCAGCCGAGCAGCGGTCGGTGGGGGGACTGGGAGGCGCTAATTAATTGATTCCTTTGGAC
TGTAAAATATGGCGGCGTCTACACGGAACCCATGGACTCATAAACAATATATCTGTTGGGCGTG
AGTGCACTGTCTCTCAAATAATTTTTCCATAGGCAAATGTCAGAGGGTTCTGGATTTTTAGTTG
CTAAGGAAAGATCCAAATGGGACCAATTTTAGGAGGCCCAAACAGAGTCCGTTCAGTGTCAGAA
AATGCTTCCCCAAAGGGGTTGGGAGTGTGTTTTGTTGGAAAAAAGCTTGGGTTATAGGAAAGCC
TTTCCCTGCTACTTGTGTAGACCCAGCCCAATTTAAGAATTACAAGGAAGCGAAGGGGTTGTGT
AGGCCGGAAGCCTCTCTGTCCCGGCTGGATGCAGGGGACTTGAGCTGCTCCGGAATTTGAGAGG
AACATAGAAGCAAAGGTCCAGCCTTTGCTTCGTGCTGATTCCTAGACTTAAGATTCAAAAACAA
ATTTTTAAAAGTGAAACCAGCCCTAGCCTTTGGAAGCTCTTGAAGGTTCAGCACCCACCCAGGA
ATCCACCTGCCTGTTACACGCCTCTCCAAGACACAGTGGCACCGCTTTTCTAACTGGCAGCACA
GAGCAACTCTATAATATGCTTATATTAGGTCTAGAAGAATGCATCTTGAGACACATGGGTAACC
TAATTATATAATGCTTGTTCCATACAGGAGTGATTATGCAGTGGGACCCTGCTGCAAACGGGAC
TTTGCACTCTAAATATAGACCCCAGCTTGGGACAAAAGTTGCAGTAGAAAAATAGACATAGGAG
AACACTTAAATAAGTGATGCATGTAGACACAGAAGGGGTATTTAAAAGACAGAAATAATAGAAG
TACAGAAGAACAGAAAAAAAATCAGCAGATGGAGATTACCATTCCCAATGCCTGAACTTCCTCC
TGCTATTAAGATTGCTAGAGAATTGTGTCTTAAACAGTTCATGAACCCAGAAGAATGCAATTTC
AATGTATTTAGTACACACACAGTATGTATATAAACACAACTCACAGAATATATTTTCCATACAT
TGGGTAGGTATGCACTTTGTGTATATATAATAATGTATTTTCCATGCAGTTTTAAAATGTAGAT
ATATTAATATCTGGATGCATTTTCTGTGCACTGGTTTTATATGCCTTATGGAGTATATACTCAC
ATGTAGCTAAATAGACTCAGGACTGCACATTCCTTGTGTAGGTTGTGTGTGTGTGGTGGTTTTA
TGCATAAATAAAGTTTTACATGTGGTGAATATA

hide sequence

RefSeq Acc Id:

NR_186237

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,968,671 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,934,163 (-)	NCBI

RefSeq Acc Id:

NR_186238

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,968,671 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,934,163 (-)	NCBI

RefSeq Acc Id:

NR_186239

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,968,671 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,934,163 (-)	NCBI

RefSeq Acc Id:

NR_186240

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI

RefSeq Acc Id:

NR_186241

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI

RefSeq Acc Id:

NR_186242

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI

RefSeq Acc Id:

NR_186243

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI

RefSeq Acc Id:

NR_186244

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI

RefSeq Acc Id:

NR_186245

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI

RefSeq Acc Id:

NR_186246

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI

RefSeq Acc Id:

NR_186247

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI

RefSeq Acc Id:

NR_186248

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI

RefSeq Acc Id:

NR_186249

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI

RefSeq Acc Id:

NR_186250

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,962,312 - 53,974,954 (-)	NCBI
T2T-CHM13v2.0	12	53,927,801 - 53,940,446 (-)	NCBI

Promoters

RGD ID:

6790108

Promoter ID:

HG_KWN:15783

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

HeLa_S3, Lymphoblastoid, NB4

Transcripts:

OTTHUMT00000328662, OTTHUMT00000328663

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	12	52,654,661 - 52,655,832 (-)	MPROMDB

RGD ID:

15096602

Promoter ID:

EPDNEWNC_H1446

Type:

initiation region

Name:

HOTAIR_2

Description:

HOX transcript antisense RNA [Source:HGNCSymbol;Acc:HGNC:33510]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,966,661 - 53,966,721	EPDNEWNC

RGD ID:

15096616

Promoter ID:

EPDNEWNC_H1447

Type:

initiation region

Name:

HOTAIR_3

Description:

HOX transcript antisense RNA [Source:HGNCSymbol;Acc:HGNC:33510]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,967,376 - 53,967,436	EPDNEWNC

RGD ID:

15096609

Promoter ID:

EPDNEWNC_H1448

Type:

initiation region

Name:

HOTAIR_1

Description:

HOX transcript antisense RNA [Source:HGNCSymbol;Acc:HGNC:33510]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	12	53,974,946 - 53,975,006	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:33510	AgrOrtholog
COSMIC	HOTAIR	COSMIC
Ensembl Genes	ENSG00000228630	Ensembl, ENTREZGENE
Ensembl Transcript	ENST00000424518	ENTREZGENE
	ENST00000717832	ENTREZGENE
	ENST00000717834	ENTREZGENE
	ENST00000717836	ENTREZGENE
GTEx	ENSG00000228630	GTEx
HGNC ID	HGNC:33510	ENTREZGENE
Human Proteome Map	HOTAIR	Human Proteome Map
NCBI Gene	100124700	ENTREZGENE
OMIM	611400	OMIM
PharmGKB	PA162391575	PharmGKB
RNAcentral	URS00026A19E6	RNACentral
	URS00026A1A0A	RNACentral
	URS00026A1B55	RNACentral
	URS00026A1C49	RNACentral
	URS00026A1DAE	RNACentral
	URS00026A1E8F	RNACentral
	URS00026A1F99	RNACentral
	URS00026A2032	RNACentral
	URS00026A220A	RNACentral
	URS00026A23DD	RNACentral
	URS00026A23F2	RNACentral
	URS00026A250F	RNACentral
	URS00026A2632	RNACentral
	URS00026A268E	RNACentral
	URS00026A26A6	RNACentral
	URS00026A26DE	RNACentral
	URS00026A2894	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-08-21	HOTAIR	HOX transcript antisense RNA	HOTAIR	HOX transcript antisense RNA (non-protein coding)	Symbol and/or name change	5135510	APPROVED
2011-09-01	HOTAIR	HOX transcript antisense RNA (non-protein coding)	HOTAIR	hox transcript antisense RNA (non-protein coding)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD