Adnp2 (ADNP homeobox 2) - Rat Genome Database

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Gene: Adnp2 (ADNP homeobox 2) Heterocephalus glaber
Analyze
Symbol: Adnp2
Name: ADNP homeobox 2
RGD ID: 18936806
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); INVOLVED IN nervous system development (ortholog); ASSOCIATED WITH Burn-McKeown syndrome (ortholog); chromosome 18q deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADNP homeobox protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624806195,608 - 216,587 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624806191,927 - 225,321 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Adnp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624806195,608 - 216,587 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624806191,927 - 225,321 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ADNP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381880,109,262 - 80,140,346 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1880,109,262 - 80,147,523 (+)EnsemblGRCh38hg38GRCh38
GRCh371877,867,146 - 77,898,229 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361875,967,903 - 75,999,220 (+)NCBINCBI36Build 36hg18NCBI36
Celera1874,639,542 - 74,670,861 (+)NCBICelera
Cytogenetic Map18q23NCBI
HuRef1874,488,684 - 74,519,969 (+)NCBIHuRef
CHM1_11877,861,922 - 77,893,235 (+)NCBICHM1_1
T2T-CHM13v2.01880,385,719 - 80,416,803 (+)NCBIT2T-CHM13v2.0
Adnp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391880,169,523 - 80,195,284 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1880,169,526 - 80,194,697 (-)EnsemblGRCm39 Ensembl
GRCm381880,126,315 - 80,151,516 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1880,126,311 - 80,151,482 (-)EnsemblGRCm38mm10GRCm38
MGSCv371880,323,874 - 80,348,221 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361880,287,794 - 80,313,822 (-)NCBIMGSCv36mm8
Celera1881,246,577 - 81,270,977 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1853.28NCBI
Adnp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81875,846,860 - 75,871,638 (-)NCBIGRCr8
mRatBN7.21873,571,870 - 73,597,088 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1873,571,936 - 73,628,484 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1875,674,513 - 75,698,491 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01876,343,859 - 76,367,838 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01874,189,010 - 74,213,138 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01876,637,415 - 76,661,186 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1876,637,785 - 76,653,056 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01872,145,550 - 72,169,321 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41877,017,502 - 77,041,570 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11877,090,698 - 77,114,104 (-)NCBI
Celera1872,235,432 - 72,259,493 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
Adnp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540263,311,741 - 63,347,641 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540263,312,588 - 63,346,307 (+)NCBIChiLan1.0ChiLan1.0
ADNP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21797,749,314 - 97,780,935 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11883,441,935 - 83,473,554 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01873,757,926 - 73,789,771 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11877,080,446 - 77,103,098 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1877,080,441 - 77,103,098 (+)Ensemblpanpan1.1panPan2
ADNP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11600,804 - 635,013 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1602,264 - 635,348 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha11,603,531 - 1,638,699 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01398,372 - 434,322 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1399,176 - 434,130 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11452,671 - 487,593 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01397,922 - 432,898 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01569,077 - 604,064 (-)NCBIUU_Cfam_GSD_1.0
Adnp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494414,803,373 - 14,833,146 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936616123,758 - 146,254 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936616124,590 - 145,944 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADNP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6128,030,715 - 128,113,288 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16128,071,503 - 128,113,292 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21310,003,280 - 310,043,658 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADNP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118140,780 - 169,416 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18139,995 - 169,052 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606026,153,278 - 26,181,832 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000002410   ⟹   ENSHGLP00000002361
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624806195,608 - 216,587 (-)Ensembl
RefSeq Acc Id: XM_004861897   ⟹   XP_004861954
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624806191,927 - 225,023 (-)NCBI
RefSeq Acc Id: XM_004861898   ⟹   XP_004861955
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624806191,927 - 225,321 (-)NCBI
RefSeq Acc Id: XM_013078544   ⟹   XP_012933998
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624806191,927 - 216,258 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004861954 (Get FASTA)   NCBI Sequence Viewer  
  XP_004861955 (Get FASTA)   NCBI Sequence Viewer  
  XP_012933998 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002361
Reference Protein Sequences
RefSeq Acc Id: XP_004861955   ⟸   XM_004861898
- Peptide Label: isoform X1
- UniProtKB: G5AKA9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861954   ⟸   XM_004861897
- Peptide Label: isoform X1
- UniProtKB: G5AKA9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012933998   ⟸   XM_013078544
- Peptide Label: isoform X2
- UniProtKB: G5AKA9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000002361   ⟸   ENSHGLT00000002410


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001792 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002410 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro ADNP/ADNP2 UniProtKB/TrEMBL
  ADNP_Znf UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Adnp2 ENTREZGENE
PANTHER ACTIVITY-DEPENDENT NEUROPROTECTOR HOMEOBOX PROTEIN 2 UniProtKB/TrEMBL
  NEUROPROTECTIVE PEPTIDE-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam ADNP_N UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain-like UniProtKB/TrEMBL
UniProt G5AKA9 ENTREZGENE, UniProtKB/TrEMBL