Chd1l (chromodomain helicase DNA binding protein 1 like) - Rat Genome Database

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Gene: Chd1l (chromodomain helicase DNA binding protein 1 like) Heterocephalus glaber
Analyze
Symbol: Chd1l
Name: chromodomain helicase DNA binding protein 1 like
RGD ID: 18936592
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent chromatin remodeler activity (ortholog); histone reader activity (ortholog); INVOLVED IN chromatin remodeling (inferred); DNA damage response (inferred); DNA repair (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); CAKUT (ortholog); cataract 1 multiple types (ortholog); FOUND IN nucleoplasm (ortholog); site of DNA damage (ortholog); site of double-strand break (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromodomain-helicase-DNA-binding protein 1-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477216,178,139 - 16,241,624 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477216,178,080 - 16,241,869 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Chd1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477216,178,139 - 16,241,624 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477216,178,080 - 16,241,869 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CHD1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,172,747 - 147,295,762 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,242,654 - 147,295,765 (+)EnsemblGRCh38hg38GRCh38
GRCh371146,644,326 - 146,767,443 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361145,180,915 - 145,234,067 (+)NCBINCBI36Build 36hg18NCBI36
Build 341143,939,149 - 143,992,257NCBI
Celera1122,216,559 - 122,269,716 (-)NCBICelera
Cytogenetic Map1q21.1NCBI
HuRef1120,126,695 - 120,180,299 (+)NCBIHuRef
CHM1_11148,610,767 - 148,663,892 (+)NCBICHM1_1
T2T-CHM13v2.01147,512,572 - 147,635,662 (-)NCBIT2T-CHM13v2.0
Chd1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39397,468,056 - 97,517,538 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl397,468,058 - 97,517,519 (-)EnsemblGRCm39 Ensembl
GRCm38397,560,740 - 97,610,222 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl397,560,742 - 97,610,203 (-)EnsemblGRCm38mm10GRCm38
MGSCv37397,364,671 - 97,414,113 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36397,646,153 - 97,695,595 (-)NCBIMGSCv36mm8
Celera398,960,418 - 99,009,880 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map342.17NCBI
Chd1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82187,819,869 - 187,906,359 (-)NCBIGRCr8
mRatBN7.22185,138,526 - 185,217,498 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2185,139,308 - 185,217,595 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02199,714,044 - 199,792,270 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2199,716,713 - 199,771,896 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02219,191,907 - 219,249,938 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42192,382,644 - 192,438,157 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12192,345,407 - 192,400,960 (-)NCBI
Celera2177,632,171 - 177,710,093 (-)NCBICelera
Cytogenetic Map2q34NCBI
Chd1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555681,132,857 - 1,189,024 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555681,132,594 - 1,189,176 (-)NCBIChiLan1.0ChiLan1.0
CHD1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21102,430,969 - 102,555,824 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11102,019,317 - 102,144,906 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01122,595,246 - 122,720,788 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11112,809,272 - 112,862,234 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1112,809,274 - 112,862,219 (-)Ensemblpanpan1.1panPan2
CHD1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11757,725,823 - 57,806,065 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1757,725,640 - 57,806,048 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1757,270,007 - 57,274,456 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01758,725,649 - 58,814,453 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1758,725,642 - 58,814,454 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11757,618,145 - 57,700,588 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01757,667,050 - 57,755,705 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01758,399,695 - 58,482,167 (+)NCBIUU_Cfam_GSD_1.0
Chd1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024412066277,313 - 309,747 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937024164,327 - 216,851 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004937024164,309 - 216,967 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHD1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4100,264,968 - 100,425,692 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14100,264,963 - 100,425,728 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24110,096,642 - 110,255,293 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHD1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603814,959,047 - 15,013,195 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000012636   ⟹   ENSHGLP00000012500
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477216,178,139 - 16,241,624 (+)Ensembl
RefSeq Acc Id: XM_004853887   ⟹   XP_004853944
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477216,178,080 - 16,241,869 (+)NCBI
RefSeq Acc Id: XM_004853888   ⟹   XP_004853945
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477216,178,080 - 16,241,869 (+)NCBI
RefSeq Acc Id: XM_021265795   ⟹   XP_021121454
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477216,191,700 - 16,241,869 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004853944 (Get FASTA)   NCBI Sequence Viewer  
  XP_004853945 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121454 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012500
RefSeq Acc Id: XP_004853944   ⟸   XM_004853887
- Peptide Label: isoform X1
- UniProtKB: G5BA07 (UniProtKB/TrEMBL),   A0AAX6PKH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004853945   ⟸   XM_004853888
- Peptide Label: isoform X2
- UniProtKB: G5BA07 (UniProtKB/TrEMBL),   A0AAX6PKF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121454   ⟸   XM_021265795
- Peptide Label: isoform X3
- UniProtKB: A0AAX6TLB0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000012500   ⟸   ENSHGLT00000012636


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008933 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012636 ENTREZGENE
Gene3D-CATH Leucine Aminopeptidase, subunit E, domain 1 UniProtKB/TrEMBL
  P-loop containing nucleotide triphosphate hydrolases UniProtKB/TrEMBL
  Tandem AAA-ATPase domain UniProtKB/TrEMBL
InterPro ALC1 UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAH_CS UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  Macro_dom UniProtKB/TrEMBL
  Macro_dom-like UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
NCBI Gene Chd1l ENTREZGENE
PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE UniProtKB/TrEMBL
  CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE UniProtKB/TrEMBL
Pfam Helicase_C UniProtKB/TrEMBL
  SNF2-rel_dom UniProtKB/TrEMBL
PROSITE DEAH_ATP_HELICASE UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  MACRO UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP Macro domain-like UniProtKB/TrEMBL
  P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
UniProt A0AAX6PKF1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PKH2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6TLB0 ENTREZGENE, UniProtKB/TrEMBL
  G5BA07 ENTREZGENE, UniProtKB/TrEMBL