Elovl1 (ELOVL fatty acid elongase 1) - Rat Genome Database

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Gene: Elovl1 (ELOVL fatty acid elongase 1) Heterocephalus glaber
Analyze
Symbol: Elovl1
Name: ELOVL fatty acid elongase 1
RGD ID: 18936591
Description: ENCODES a protein that exhibits fatty acid elongase activity (inferred); transferase activity (inferred); INVOLVED IN ceramide biosynthetic process (inferred); establishment of skin barrier (inferred); fatty acid biosynthetic process (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); ICHTHYOTIC KERATODERMA, SPASTICITY, HYPOMYELINATION, AND DYSMORPHIC FACIAL FEATURES (ortholog); optic atrophy (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Elongation of very long chain fatty acids protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248922,675,421 - 2,684,622 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248922,679,872 - 2,684,499 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Elovl1Naked Mole-RatCharcot-Marie-Tooth disease dominant intermediate C  ISORGD:13490158554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease dominant intermediate CClinVarPMID:28492532
Elovl1Naked Mole-RatICHTHYOTIC KERATODERMA, SPASTICITY, HYPOMYELINATION, AND DYSMORPHIC FACIAL FEATURES  ISORGD:13490158554872ClinVar Annotator: match by term: ELOVL1-related condition | ClinVar Annotator: match by term: Ichthyotic keratoderma, more ...ClinVarPMID:25741868|PMID:28492532|PMID:29496980|PMID:30487246|PMID:35379526
Elovl1Naked Mole-Ratoptic atrophy  ISORGD:13490158554872ClinVar Annotator: match by term: Optic atrophyClinVarPMID:25741868|PMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Elovl1Naked Mole-RatICHTHYOTIC KERATODERMA, SPASTICITY, HYPOMYELINATION, AND DYSMORPHIC FACIAL FEATURES  ISORGD:13490157240710 OMIM 


Biological Process
1 to 20 of 23 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Elovl1Naked Mole-Ratceramide biosynthetic process involved_inIEAUniProtKB:Q9JLJ5|ensembl:ENSMUSP00000006557150520179 EnsemblGO_REF:0000107
Elovl1Naked Mole-Ratestablishment of skin barrier involved_inIEAUniProtKB:Q9JLJ5|ensembl:ENSMUSP00000006557150520179 EnsemblGO_REF:0000107
Elovl1Naked Mole-Ratfatty acid biosynthetic process involved_inIEAUniPathway:UPA00094150520179 UniProtGO_REF:0000041
Elovl1Naked Mole-Ratfatty acid biosynthetic process involved_inIEAUniProtKB-KW:KW-0275150520179 UniProtGO_REF:0000043
Elovl1Naked Mole-Ratfatty acid elongation, monounsaturated fatty acid involved_inIEAUniRule:UR000254934150520179 UniProtGO_REF:0000104
Elovl1Naked Mole-Ratfatty acid elongation, monounsaturated fatty acid involved_inIEAPANTHER:PTN008962021150520179 TreeGrafterGO_REF:0000118
Elovl1Naked Mole-Ratfatty acid elongation, monounsaturated fatty acid involved_inIEAUniProtKB:Q9BW60|ensembl:ENSP00000361536150520179 EnsemblGO_REF:0000107
Elovl1Naked Mole-Ratfatty acid elongation, polyunsaturated fatty acid involved_inIEAPANTHER:PTN008962021150520179 TreeGrafterGO_REF:0000118
Elovl1Naked Mole-Ratfatty acid elongation, saturated fatty acid involved_inIEAInterPro:IPR033681150520179 InterProGO_REF:0000002
Elovl1Naked Mole-Ratfatty acid elongation, saturated fatty acid involved_inIEAUniProtKB:Q9BW60|ensembl:ENSP00000361536150520179 EnsemblGO_REF:0000107
Elovl1Naked Mole-Ratfatty acid elongation, saturated fatty acid involved_inIEAPANTHER:PTN008962021150520179 TreeGrafterGO_REF:0000118
Elovl1Naked Mole-Ratfatty acid elongation, saturated fatty acid involved_inIEAUniRule:UR000254934150520179 UniProtGO_REF:0000104
Elovl1Naked Mole-Ratfatty acid metabolic process involved_inIEAUniProtKB-KW:KW-0276150520179 UniProtGO_REF:0000043
Elovl1Naked Mole-Ratlipid biosynthetic process involved_inIEAARBA:ARBA00027236150520179 UniProtGO_REF:0000117
Elovl1Naked Mole-Ratlipid metabolic process involved_inIEAUniProtKB-KW:KW-0443150520179 UniProtGO_REF:0000043
Elovl1Naked Mole-Ratlong-chain fatty-acyl-CoA biosynthetic process involved_inIEAUniRule:UR000254934150520179 UniProtGO_REF:0000104
Elovl1Naked Mole-Ratsphingolipid biosynthetic process involved_inIEAUniProtKB:Q9BW60|UniProtKB:Q9JLJ5|ensembl:ENSMUSP00000006557|ensembl:ENSP00000361536150520179 EnsemblGO_REF:0000107
Elovl1Naked Mole-Ratsphingolipid biosynthetic process involved_inIEAPANTHER:PTN008962021150520179 TreeGrafterGO_REF:0000118
Elovl1Naked Mole-Ratunsaturated fatty acid biosynthetic process involved_inIEAUniRule:UR000254934150520179 UniProtGO_REF:0000104
Elovl1Naked Mole-Ratvery long-chain fatty acid biosynthetic process involved_inIEAUniRule:UR000254934150520179 UniProtGO_REF:0000104
1 to 20 of 23 rows

Cellular Component
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Elovl1Naked Mole-Ratendoplasmic reticulum located_inIEAInterPro:IPR033681150520179 InterProGO_REF:0000002
Elovl1Naked Mole-Ratendoplasmic reticulum located_inIEAUniProtKB:Q9BW60|ensembl:ENSP00000361536150520179 EnsemblGO_REF:0000107
Elovl1Naked Mole-Ratendoplasmic reticulum located_inIEAUniProtKB-KW:KW-0256150520179 UniProtGO_REF:0000043
Elovl1Naked Mole-Ratendoplasmic reticulum membrane located_inIEAUniRule:UR000254934150520179 UniProtGO_REF:0000104
Elovl1Naked Mole-Ratendoplasmic reticulum membrane located_inIEAPANTHER:PTN008962021150520179 TreeGrafterGO_REF:0000118
Elovl1Naked Mole-Ratendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-0097150520179 UniProtGO_REF:0000044
Elovl1Naked Mole-Ratmembrane located_inIEAInterPro:IPR002076150520179 InterProGO_REF:0000002
Elovl1Naked Mole-Ratmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
Elovl1Naked Mole-Ratmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
Elovl1Naked Mole-Ratmembrane located_inIEAUniRule:UR000254934150520179 UniProtGO_REF:0000104
1 to 10 of 10 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Elovl1Naked Mole-Ratfatty acid elongase activity enablesIEAEC:2.3.1.199150520179 UniProtGO_REF:0000003
Elovl1Naked Mole-Ratfatty acid elongase activity enablesIEAUniProtKB:Q9BW60|ensembl:ENSP00000361536150520179 EnsemblGO_REF:0000107
Elovl1Naked Mole-Ratfatty acid elongase activity enablesIEAPANTHER:PTN008962021150520179 TreeGrafterGO_REF:0000118
Elovl1Naked Mole-Ratfatty acid elongase activity enablesIEAInterPro:IPR002076|InterPro:IPR033681150520179 InterProGO_REF:0000002
Elovl1Naked Mole-Ratfatty acid elongase activity enablesIEAUniRule:UR000254934150520179 UniProtGO_REF:0000104
Elovl1Naked Mole-Ratprotein binding enablesISOUniProtKB:Q53GQ0|UniProtKB:Q96G23|UniProtKB:Q991909068941 PMID:20937905UniProtPMID:20937905
Elovl1Naked Mole-Ratprotein binding enablesISOUniProtKB:Q9NZ019068941 PMID:38422897UniProtPMID:38422897
Elovl1Naked Mole-Rattransferase activity enablesIEAUniProtKB-KW:KW-0808150520179 UniProtGO_REF:0000043

PMID:21993625   PMID:22301074   PMID:30032202  



Elovl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248922,675,421 - 2,684,622 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248922,679,872 - 2,684,499 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ELOVL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38143,363,401 - 43,368,011 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl143,363,398 - 43,368,074 (-)EnsemblGRCh38hg38GRCh38
GRCh37143,829,072 - 43,833,682 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36143,601,659 - 43,606,286 (-)NCBINCBI36Build 36hg18NCBI36
Build 34143,498,165 - 43,502,792NCBI
Celera142,111,226 - 42,115,853 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,948,810 - 41,953,487 (-)NCBIHuRef
CHM1_1143,945,527 - 43,950,204 (-)NCBICHM1_1
T2T-CHM13v2.0143,233,949 - 43,238,559 (-)NCBIT2T-CHM13v2.0
Elovl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394118,285,321 - 118,290,150 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4118,285,290 - 118,290,150 (+)EnsemblGRCm39 Ensembl
GRCm384118,426,874 - 118,432,953 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4118,428,093 - 118,432,953 (+)EnsemblGRCm38mm10GRCm38
MGSCv374118,100,698 - 118,105,521 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,926,025 - 117,930,848 (+)NCBIMGSCv36mm8
Celera4117,153,631 - 117,158,454 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map454.61NCBI
Elovl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85137,246,781 - 137,251,351 (+)NCBIGRCr8
mRatBN7.25131,961,478 - 131,965,961 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5131,961,322 - 131,965,958 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5134,670,003 - 134,673,190 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05136,424,640 - 136,427,827 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05136,447,038 - 136,450,225 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05137,255,868 - 137,260,486 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5137,255,908 - 137,260,483 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05141,046,751 - 141,049,947 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,909,438 - 138,912,186 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5130,508,244 - 130,511,440 (+)NCBICelera
Cytogenetic Map5q36NCBI
Elovl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555372,945,509 - 2,950,146 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555372,945,509 - 2,950,146 (-)NCBIChiLan1.0ChiLan1.0
ELOVL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21183,424,960 - 183,446,629 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11182,566,350 - 182,588,012 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,664,818 - 42,686,475 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1144,044,693 - 44,064,111 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,044,693 - 44,048,769 (-)Ensemblpanpan1.1panPan2
ELOVL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,798,305 - 16,803,071 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,798,370 - 16,802,899 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,925,313 - 16,930,087 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01516,965,026 - 16,969,802 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1516,965,100 - 16,969,969 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11516,757,503 - 16,762,275 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01516,826,506 - 16,831,275 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01516,900,074 - 16,904,850 (+)NCBIUU_Cfam_GSD_1.0
Elovl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505858,940,387 - 58,945,152 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647424,764,718 - 24,769,947 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647424,765,173 - 24,769,903 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELOVL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,881,352 - 167,886,124 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,881,357 - 167,886,125 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26155,333,073 - 155,340,903 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELOVL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12089,444,146 - 89,448,802 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603327,472,819 - 27,477,500 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.






Ensembl Acc Id: ENSHGLT00000006714   ⟹   ENSHGLP00000006632
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248922,675,421 - 2,684,319 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000006715   ⟹   ENSHGLP00000006633
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248922,680,066 - 2,684,622 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000006716   ⟹   ENSHGLP00000006634
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248922,680,366 - 2,681,982 (-)Ensembl
RefSeq Acc Id: XM_004871857   ⟹   XP_004871914
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,679,872 - 2,684,499 (-)NCBI
RefSeq Acc Id: XM_013068192   ⟹   XP_012923646
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,680,366 - 2,682,632 (-)NCBI
RefSeq Acc Id: XM_021249930   ⟹   XP_021105589
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248922,680,366 - 2,684,486 (-)NCBI
Protein RefSeqs XP_004871914 (Get FASTA)   NCBI Sequence Viewer  
  XP_012923646 (Get FASTA)   NCBI Sequence Viewer  
  XP_021105589 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA99270 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006632
  ENSHGLP00000006633
  ENSHGLP00000038429
GenBank Protein JAO00472 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004871914   ⟸   XM_004871857
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JW97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105589   ⟸   XM_021249930
- Peptide Label: isoform X2
- UniProtKB: G5AQG0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923646   ⟸   XM_013068192
- Peptide Label: isoform X2
- UniProtKB: G5AQG0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000006634   ⟸   ENSHGLT00000006716
Ensembl Acc Id: ENSHGLP00000006632   ⟸   ENSHGLT00000006714



1 to 15 of 15 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000004848 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000006714 ENTREZGENE
  ENSHGLT00000006715 ENTREZGENE
  ENSHGLT00000055232 UniProtKB/TrEMBL
InterPro ELO_CS UniProtKB/TrEMBL
  ELO_fam UniProtKB/TrEMBL
  ELOVL1 UniProtKB/TrEMBL
KEGG Report hgl:101705922 UniProtKB/TrEMBL
NCBI Gene Elovl1 ENTREZGENE
PANTHER ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN 1 UniProtKB/TrEMBL
  PTHR11157 UniProtKB/TrEMBL
Pfam ELO UniProtKB/TrEMBL
PROSITE ELO UniProtKB/TrEMBL
UniProt A0A0P6JW97 ENTREZGENE, UniProtKB/TrEMBL
  G5AQG0 ENTREZGENE, UniProtKB/TrEMBL
1 to 15 of 15 rows