Cuta (cutA divalent cation tolerance homolog) - Rat Genome Database

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Gene: Cuta (cutA divalent cation tolerance homolog) Heterocephalus glaber
Analyze
Symbol: Cuta
Name: cutA divalent cation tolerance homolog
RGD ID: 18935604
Description: ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN protein localization (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); genetic disease (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein CutA
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,398,684 - 23,400,108 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,398,591 - 23,400,111 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cuta
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,398,684 - 23,400,108 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,398,591 - 23,400,111 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CUTA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,416,442 - 33,418,107 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl633,416,442 - 33,418,317 (-)EnsemblGRCh38hg38GRCh38
GRCh37633,384,219 - 33,385,884 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,492,297 - 33,494,043 (-)NCBINCBI36Build 36hg18NCBI36
Build 34633,492,296 - 33,493,669NCBI
Celera634,938,742 - 34,940,488 (-)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef633,126,468 - 33,128,214 (-)NCBIHuRef
CHM1_1633,386,214 - 33,387,959 (-)NCBICHM1_1
T2T-CHM13v2.0633,237,804 - 33,239,469 (-)NCBIT2T-CHM13v2.0
Cuta
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391727,156,946 - 27,158,847 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1727,152,793 - 27,158,543 (-)EnsemblGRCm39 Ensembl
GRCm381726,937,972 - 26,939,884 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,933,819 - 26,939,569 (-)EnsemblGRCm38mm10GRCm38
MGSCv371727,074,917 - 27,076,423 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361726,665,561 - 26,667,067 (-)NCBIMGSCv36mm8
Celera1727,474,695 - 27,476,201 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.6NCBI
Cuta
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,024,816 - 5,026,446 (-)NCBIGRCr8
mRatBN7.2205,022,956 - 5,024,580 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,022,956 - 5,024,552 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,748,342 - 5,750,042 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,110,079 - 5,111,779 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,588,515 - 5,590,087 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,532,024 - 5,533,640 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,532,024 - 5,533,620 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,591,037 - 7,592,657 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,175,113 - 5,176,689 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1205,175,343 - 5,176,834 (-)NCBI
Celera206,605,378 - 6,606,954 (-)NCBICelera
Cytogenetic Map20p12NCBI
Cuta
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,947,093 - 1,948,541 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,947,139 - 1,948,657 (-)NCBIChiLan1.0ChiLan1.0
CUTA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,901,557 - 47,904,152 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,768,742 - 43,771,338 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,995,889 - 32,997,581 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1634,107,227 - 34,109,009 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl634,107,228 - 34,108,958 (-)Ensemblpanpan1.1panPan2
CUTA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,827,510 - 2,829,151 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,823,512 - 2,829,433 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,908,319 - 2,909,973 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0123,159,155 - 3,160,809 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl123,155,157 - 3,160,664 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,826,276 - 2,827,930 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,907,383 - 2,909,038 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0123,005,497 - 3,007,151 (-)NCBIUU_Cfam_GSD_1.0
Cuta
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,478,437 - 38,480,176 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,479,953 - 25,486,157 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,480,134 - 25,481,831 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUTA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl729,720,094 - 29,721,769 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1729,720,094 - 29,721,713 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2734,373,420 - 34,375,039 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUTA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,648,181 - 38,649,906 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1738,648,140 - 38,649,810 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604433,265,237 - 33,267,013 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004846774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01035171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000024892   ⟹   ENSHGLP00000024670
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475423,398,684 - 23,400,108 (+)Ensembl
RefSeq Acc Id: XM_004846774   ⟹   XP_004846831
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475423,398,591 - 23,400,111 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004846831 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000024670
Reference Protein Sequences
RefSeq Acc Id: XP_004846831   ⟸   XM_004846774
- UniProtKB: G5BK20 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000024670   ⟸   ENSHGLT00000024892


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017591 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000024892 ENTREZGENE
Gene3D-CATH 3.30.70.120 UniProtKB/TrEMBL
InterPro Ion_tolerance_CutA UniProtKB/TrEMBL
  N-reg_PII-like_a/b UniProtKB/TrEMBL
  N-reg_PII/ATP_PRibTrfase_C UniProtKB/TrEMBL
NCBI Gene Cuta ENTREZGENE
PANTHER DIVALENT CATION TOLERANCE CUTA-RELATED UniProtKB/TrEMBL
  PROTEIN CUTA UniProtKB/TrEMBL
Pfam CutA1 UniProtKB/TrEMBL
Superfamily-SCOP GlnB-like UniProtKB/TrEMBL
UniProt G5BK20 ENTREZGENE, UniProtKB/TrEMBL