Ndufa9 (NADH:ubiquinone oxidoreductase subunit A9) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ndufa9 (NADH:ubiquinone oxidoreductase subunit A9) Heterocephalus glaber
Analyze
Symbol: Ndufa9
Name: NADH:ubiquinone oxidoreductase subunit A9
RGD ID: 18935204
Description: ENCODES a protein that exhibits NADH dehydrogenase activity (ortholog); INVOLVED IN circadian rhythm (ortholog); response to glucose (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2J (ortholog); congenital myopathy 5 (ortholog); episodic ataxia type 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrial membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9, mitochondrial; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248601,703,244 - 1,728,779 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248601,703,972 - 1,729,185 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Ndufa9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248601,703,244 - 1,728,779 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248601,703,972 - 1,729,185 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NDUFA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38124,649,114 - 4,694,317 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl124,649,095 - 4,694,317 (+)EnsemblGRCh38hg38GRCh38
GRCh37124,758,280 - 4,803,483 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36124,628,544 - 4,666,660 (+)NCBINCBI36Build 36hg18NCBI36
Build 34124,628,543 - 4,666,658NCBI
Celera126,380,296 - 6,418,724 (+)NCBICelera
Cytogenetic Map12p13.32NCBI
HuRef124,614,987 - 4,653,417 (+)NCBIHuRef
CHM1_1124,757,905 - 4,796,363 (+)NCBICHM1_1
T2T-CHM13v2.0124,655,954 - 4,701,144 (+)NCBIT2T-CHM13v2.0
Ndufa9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396126,798,826 - 126,826,107 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6126,798,684 - 126,826,099 (-)EnsemblGRCm39 Ensembl
GRCm386126,821,863 - 126,849,144 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6126,821,721 - 126,849,136 (-)EnsemblGRCm38mm10GRCm38
MGSCv376126,771,881 - 126,799,162 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366126,787,574 - 126,814,744 (-)NCBIMGSCv36mm8
Celera6128,499,463 - 128,526,780 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map661.92NCBI
Ndufa9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84161,345,398 - 161,374,188 (-)NCBIGRCr8
mRatBN7.24159,659,242 - 159,688,034 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4159,659,242 - 159,688,018 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4165,889,046 - 165,917,811 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04161,671,953 - 161,700,718 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04160,305,984 - 160,334,750 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04159,371,263 - 159,399,636 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4159,371,259 - 159,399,634 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04232,213,357 - 232,241,730 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44163,208,781 - 163,237,542 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14163,453,715 - 163,482,444 (-)NCBI
Celera4148,375,437 - 148,404,198 (-)NCBICelera
Cytogenetic Map4q42NCBI
Ndufa9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554132,435,775 - 2,475,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554132,435,717 - 2,475,158 (+)NCBIChiLan1.0ChiLan1.0
NDUFA9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21010,197,605 - 10,235,781 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11210,194,363 - 10,239,605 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0124,766,608 - 4,811,871 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1124,687,250 - 4,725,669 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl124,687,250 - 4,725,669 (+)Ensemblpanpan1.1panPan2
NDUFA9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12740,176,090 - 40,217,293 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2740,167,293 - 40,217,190 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha276,464,880 - 6,505,841 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02740,531,582 - 40,572,569 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2740,530,267 - 40,572,846 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12740,420,486 - 40,461,440 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02740,445,623 - 40,486,623 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,875,461 - 5,916,457 (+)NCBIUU_Cfam_GSD_1.0
Ndufa9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945104,358,472 - 104,389,516 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366064,794,749 - 4,825,570 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366064,794,701 - 4,825,696 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFA9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl565,759,727 - 65,788,646 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1565,760,078 - 65,788,703 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2567,965,977 - 67,994,581 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFA9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1114,679,998 - 4,718,346 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl114,680,053 - 4,721,520 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660633,527,283 - 3,565,365 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000001455   ⟹   ENSHGLP00000001411
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248601,703,244 - 1,728,779 (+)Ensembl
RefSeq Acc Id: XM_004869370   ⟹   XP_004869427
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248601,703,972 - 1,729,185 (+)NCBI
RefSeq Acc Id: XM_004869371   ⟹   XP_004869428
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248601,703,973 - 1,729,185 (+)NCBI
RefSeq Acc Id: XM_021248050   ⟹   XP_021103709
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248601,703,972 - 1,728,398 (+)NCBI
RefSeq Acc Id: XM_021248051   ⟹   XP_021103710
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248601,703,972 - 1,728,391 (+)NCBI
RefSeq Acc Id: XM_021248052   ⟹   XP_021103711
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248601,704,135 - 1,729,185 (+)NCBI
RefSeq Acc Id: XP_004869427   ⟸   XM_004869370
- Peptide Label: isoform X1
- UniProtKB: A0AAX6QAS0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103709   ⟸   XM_021248050
- Peptide Label: isoform X2
- UniProtKB: A0AAX6S594 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103710   ⟸   XM_021248051
- Peptide Label: isoform X4
- UniProtKB: A0AAX6S3C3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004869428   ⟸   XM_004869371
- Peptide Label: isoform X3
- UniProtKB: G5ARZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103711   ⟸   XM_021248052
- Peptide Label: isoform X5
- UniProtKB: A0AAX6S3I4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000001411   ⟸   ENSHGLT00000001455


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001093 Ensembl, ENTREZGENE
  ENSHGLG00100014295 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000001455 ENTREZGENE
  ENSHGLT00100087180 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro ComplexI_NDUFA9_subunit UniProtKB/TrEMBL
  Epimerase_deHydtase UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene Ndufa9 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 9, MITOCHONDRIAL UniProtKB/TrEMBL
  NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED UniProtKB/TrEMBL
Pfam Epimerase UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0AAX6QAS0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S3C3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S3I4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S594 ENTREZGENE, UniProtKB/TrEMBL
  G5ARZ9 ENTREZGENE, UniProtKB/TrEMBL