NDUFA9 (NADH:ubiquinone oxidoreductase subunit A9) - Rat Genome Database

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Gene: NDUFA9 (NADH:ubiquinone oxidoreductase subunit A9) Sus scrofa
Analyze
Symbol: NDUFA9
Name: NADH:ubiquinone oxidoreductase subunit A9
RGD ID: 14087975
Description: ENCODES a protein that exhibits NADH dehydrogenase activity (inferred); protein-containing complex binding (inferred); INVOLVED IN response to glucose (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2J (ortholog); congenital myopathy 5 (ortholog); episodic ataxia type 1 (ortholog); FOUND IN mitochondrial respiratory chain complex I (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl565,759,727 - 65,788,646 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1565,760,078 - 65,788,703 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2567,965,977 - 67,994,581 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
NDUFA9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl565,759,727 - 65,788,646 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1565,760,078 - 65,788,703 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2567,965,977 - 67,994,581 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38124,649,114 - 4,694,317 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl124,649,095 - 4,694,317 (+)EnsemblGRCh38hg38GRCh38
GRCh37124,758,280 - 4,803,483 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36124,628,544 - 4,666,660 (+)NCBINCBI36Build 36hg18NCBI36
Build 34124,628,543 - 4,666,658NCBI
Celera126,380,296 - 6,418,724 (+)NCBICelera
Cytogenetic Map12p13.32NCBI
HuRef124,614,987 - 4,653,417 (+)NCBIHuRef
CHM1_1124,757,905 - 4,796,363 (+)NCBICHM1_1
T2T-CHM13v2.0124,655,954 - 4,701,144 (+)NCBIT2T-CHM13v2.0
Ndufa9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396126,798,826 - 126,826,107 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6126,798,684 - 126,826,099 (-)EnsemblGRCm39 Ensembl
GRCm386126,821,863 - 126,849,144 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6126,821,721 - 126,849,136 (-)EnsemblGRCm38mm10GRCm38
MGSCv376126,771,881 - 126,799,162 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366126,787,574 - 126,814,744 (-)NCBIMGSCv36mm8
Celera6128,499,463 - 128,526,780 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map661.92NCBI
Ndufa9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84161,345,398 - 161,374,188 (-)NCBIGRCr8
mRatBN7.24159,659,242 - 159,688,034 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4159,659,242 - 159,688,018 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4165,889,046 - 165,917,811 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04161,671,953 - 161,700,718 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04160,305,984 - 160,334,750 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04159,371,263 - 159,399,636 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4159,371,259 - 159,399,634 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04232,213,357 - 232,241,730 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44163,208,781 - 163,237,542 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14163,453,715 - 163,482,444 (-)NCBI
Celera4148,375,437 - 148,404,198 (-)NCBICelera
Cytogenetic Map4q42NCBI
Ndufa9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554132,435,775 - 2,475,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554132,435,717 - 2,475,158 (+)NCBIChiLan1.0ChiLan1.0
NDUFA9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21010,197,605 - 10,235,781 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11210,194,363 - 10,239,605 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0124,766,608 - 4,811,871 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1124,687,250 - 4,725,669 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl124,687,250 - 4,725,669 (+)Ensemblpanpan1.1panPan2
NDUFA9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12740,176,090 - 40,217,293 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2740,167,293 - 40,217,190 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha276,464,880 - 6,505,841 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02740,531,582 - 40,572,569 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2740,530,267 - 40,572,846 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12740,420,486 - 40,461,440 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02740,445,623 - 40,486,623 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,875,461 - 5,916,457 (+)NCBIUU_Cfam_GSD_1.0
Ndufa9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945104,358,472 - 104,389,516 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366064,794,749 - 4,825,570 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366064,794,701 - 4,825,696 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFA9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1114,679,998 - 4,718,346 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl114,680,053 - 4,721,520 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660633,527,283 - 3,565,365 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufa9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248601,703,244 - 1,728,779 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248601,703,972 - 1,729,185 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NDUFA9
1300 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 2 3
Low 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000000782   ⟹   ENSSSCP00000000766
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl565,759,727 - 65,782,661 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000040924   ⟹   ENSSSCP00000042204
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl565,760,201 - 65,788,646 (-)Ensembl
RefSeq Acc Id: XM_003126560   ⟹   XP_003126608
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1565,760,078 - 65,788,703 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003126608   ⟸   XM_003126560
- UniProtKB: A0A480QJC4 (UniProtKB/TrEMBL),   A0A4X1ULW2 (UniProtKB/TrEMBL),   A0A480UK82 (UniProtKB/TrEMBL),   A0A8D1Y3W6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000042204   ⟸   ENSSSCT00000040924
RefSeq Acc Id: ENSSSCP00000000766   ⟸   ENSSSCT00000000782

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000719 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030043436 UniProtKB/TrEMBL
  ENSSSCG00045024555 UniProtKB/TrEMBL
  ENSSSCG00050074244 UniProtKB/TrEMBL
  ENSSSCG00055024732 UniProtKB/TrEMBL
  ENSSSCG00065023173 UniProtKB/TrEMBL
  ENSSSCG00070018815 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000782.5 UniProtKB/TrEMBL
  ENSSSCT00000040924 ENTREZGENE
  ENSSSCT00000040924.3 UniProtKB/TrEMBL
  ENSSSCT00030060597.1 UniProtKB/TrEMBL
  ENSSSCT00045041960.1 UniProtKB/TrEMBL
  ENSSSCT00050101627.1 UniProtKB/TrEMBL
  ENSSSCT00055048895.1 UniProtKB/TrEMBL
  ENSSSCT00065030844.1 UniProtKB/TrEMBL
  ENSSSCT00070037120.1 UniProtKB/TrEMBL
  ENSSSCT00070037133.1 UniProtKB/TrEMBL
  ENSSSCT00070037150.1 UniProtKB/TrEMBL
  ENSSSCT00070037158.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro Epimerase_deHydtase UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100524622 UniProtKB/TrEMBL
NCBI Gene NDUFA9 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 9, MITOCHONDRIAL UniProtKB/TrEMBL
  NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED UniProtKB/TrEMBL
Pfam Epimerase UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A287AE88_PIG UniProtKB/TrEMBL
  A0A480QJC4 ENTREZGENE, UniProtKB/TrEMBL
  A0A480UK82 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1ULW2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1ULY4_PIG UniProtKB/TrEMBL
  A0A4X1UP00_PIG UniProtKB/TrEMBL
  A0A4X1UP33_PIG UniProtKB/TrEMBL
  A0A8D1Y3W6 ENTREZGENE, UniProtKB/TrEMBL
  F1SL07_PIG UniProtKB/TrEMBL
VGNC ID VGNC:98149 ENTREZGENE