Ctdsp2 (CTD small phosphatase 2) - Rat Genome Database

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Gene: Ctdsp2 (CTD small phosphatase 2) Heterocephalus glaber
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Symbol: Ctdsp2
Name: CTD small phosphatase 2
RGD ID: 18933559
Description: ENCODES a protein that exhibits calmodulin-dependent protein phosphatase activity (inferred); histone H2AXS140 phosphatase activity (inferred); MAP kinase serine/threonine phosphatase activity (inferred); INVOLVED IN negative regulation of G1/S transition of mitotic cell cycle (ortholog); negative regulation of protein phosphorylation (ortholog); protein dephosphorylation (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,108,098 - 10,130,617 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480210,107,715 - 10,133,710 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ctdsp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,108,098 - 10,130,617 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480210,107,715 - 10,133,710 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CTDSP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,819,927 - 57,846,729 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,819,927 - 57,846,729 (-)EnsemblGRCh38hg38GRCh38
GRCh371258,213,710 - 58,240,512 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361256,499,977 - 56,527,014 (-)NCBINCBI36Build 36hg18NCBI36
Build 341256,499,978 - 56,526,789NCBI
Celera1257,871,630 - 57,898,666 (-)NCBICelera
Cytogenetic Map12q14.1NCBI
HuRef1255,250,675 - 55,277,708 (-)NCBIHuRef
CHM1_11258,181,469 - 58,208,506 (-)NCBICHM1_1
T2T-CHM13v2.01257,788,296 - 57,815,097 (-)NCBIT2T-CHM13v2.0
Ctdsp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910126,814,586 - 126,835,844 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10126,814,586 - 126,835,844 (+)EnsemblGRCm39 Ensembl
GRCm3810126,978,717 - 126,999,975 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10126,978,717 - 126,999,975 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710126,415,773 - 126,437,031 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610126,398,561 - 126,402,918 (+)NCBIMGSCv36mm8
Celera10129,370,578 - 129,391,937 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.35NCBI
Ctdsp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8764,690,737 - 64,710,639 (+)NCBIGRCr8
mRatBN7.2762,805,398 - 62,825,306 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl762,805,658 - 62,825,302 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx764,694,709 - 64,714,611 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0766,897,110 - 66,917,012 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0766,698,365 - 66,718,268 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,283,683 - 70,291,795 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,283,710 - 70,288,568 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,460,026 - 70,468,044 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera759,964,189 - 59,969,458 (+)NCBICelera
Cytogenetic Map7q22NCBI
Ctdsp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,523,548 - 5,549,398 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,523,548 - 5,549,190 (-)NCBIChiLan1.0ChiLan1.0
CTDSP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21036,493,787 - 36,520,919 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11236,490,567 - 36,517,684 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,079,686 - 31,106,789 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11231,340,308 - 31,367,164 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,340,313 - 31,367,164 (+)Ensemblpanpan1.1panPan2
CTDSP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,875,307 - 1,898,385 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,876,536 - 1,898,348 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,938,082 - 1,960,869 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,884,550 - 1,907,344 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,884,618 - 1,907,270 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,862,042 - 1,885,087 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0102,104,263 - 2,127,308 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0102,228,959 - 2,252,119 (-)NCBIUU_Cfam_GSD_1.0
Ctdsp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494556,892,954 - 56,918,112 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,952,123 - 1,977,337 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,952,123 - 1,977,279 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTDSP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl523,105,172 - 23,132,586 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1523,111,366 - 23,132,811 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CTDSP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,733,041 - 53,759,809 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,736,699 - 53,742,750 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037192,201,834 - 192,228,574 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000007638   ⟹   ENSHGLP00000007553
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462480210,108,098 - 10,130,617 (+)Ensembl
RefSeq Acc Id: XM_004861160   ⟹   XP_004861217
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,118,926 - 10,133,710 (+)NCBI
RefSeq Acc Id: XM_004861161   ⟹   XP_004861218
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,107,715 - 10,133,710 (+)NCBI
RefSeq Acc Id: XM_021241389   ⟹   XP_021097048
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,126,432 - 10,133,710 (+)NCBI
RefSeq Acc Id: XM_021241390   ⟹   XP_021097049
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480210,127,897 - 10,133,710 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004861217 (Get FASTA)   NCBI Sequence Viewer  
  XP_004861218 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097048 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097049 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB07622 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007553
  ENSHGLP00100007415
RefSeq Acc Id: XP_004861218   ⟸   XM_004861161
- Peptide Label: isoform X2
- UniProtKB: G5BEB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861217   ⟸   XM_004861160
- Peptide Label: isoform X1
- UniProtKB: A0AAX6PWM6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097048   ⟸   XM_021241389
- Peptide Label: isoform X3
- UniProtKB: A0AAX6RM43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097049   ⟸   XM_021241390
- Peptide Label: isoform X3
- UniProtKB: A0AAX6RM43 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000007553   ⟸   ENSHGLT00000007638


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005482 Ensembl, ENTREZGENE
  ENSHGLG00100005549 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000007638 ENTREZGENE
  ENSHGLT00100007511 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/TrEMBL
InterPro Dullard_phosphatase UniProtKB/TrEMBL
  FCP1_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  RNA_Pol_CTD_Phosphatase UniProtKB/TrEMBL
  TIM50 UniProtKB/TrEMBL
NCBI Gene Ctdsp2 ENTREZGENE
PANTHER CARBOXY-TERMINAL DOMAIN RNA POLYMERASE II POLYPEPTIDE A SMALL PHOSPHATASE 2 UniProtKB/TrEMBL
  DULLARD PROTEIN PHOSPHATASE UniProtKB/TrEMBL
Pfam NIF UniProtKB/TrEMBL
PROSITE FCP1 UniProtKB/TrEMBL
SMART CPDc UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
UniProt A0AAX6PWM6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RM43 ENTREZGENE, UniProtKB/TrEMBL
  G5BEB1 ENTREZGENE, UniProtKB/TrEMBL