Gramd1c (GRAM domain containing 1C) - Rat Genome Database

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Gene: Gramd1c (GRAM domain containing 1C) Heterocephalus glaber
Analyze
Symbol: Gramd1c
Name: GRAM domain containing 1C
RGD ID: 18933419
Description: ENCODES a protein that exhibits cholesterol binding (inferred); cholesterol transfer activity (inferred); INVOLVED IN cellular response to cholesterol (inferred); intracellular sterol transport (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); endoplasmic reticulum-plasma membrane contact site (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GRAM domain-containing protein 1C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473134,571,894 - 34,608,859 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473134,571,191 - 34,680,754 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Gramd1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473134,571,894 - 34,608,859 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473134,571,191 - 34,680,754 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GRAMD1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383113,828,192 - 113,947,174 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3113,828,182 - 113,947,174 (+)EnsemblGRCh38hg38GRCh38
GRCh373113,557,635 - 113,666,021 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363115,040,367 - 115,148,711 (+)NCBINCBI36Build 36hg18NCBI36
Celera3111,966,333 - 112,074,472 (+)NCBICelera
Cytogenetic Map3q13.31NCBI
HuRef3110,932,234 - 111,040,020 (+)NCBIHuRef
CHM1_13113,520,993 - 113,629,397 (+)NCBICHM1_1
T2T-CHM13v2.03116,549,379 - 116,668,438 (+)NCBIT2T-CHM13v2.0
Gramd1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391643,800,713 - 43,883,757 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1643,800,713 - 43,883,708 (-)EnsemblGRCm39 Ensembl
GRCm381643,980,350 - 44,065,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1643,980,350 - 44,063,345 (-)EnsemblGRCm38mm10GRCm38
MGSCv371643,980,463 - 44,028,058 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361643,899,687 - 43,935,691 (-)NCBIMGSCv36mm8
Celera1644,335,513 - 44,383,274 (-)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1628.44NCBI
Gramd1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81170,139,076 - 70,224,478 (+)NCBIGRCr8
mRatBN7.21156,633,229 - 56,718,570 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,633,227 - 56,718,570 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1165,448,255 - 65,530,038 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01158,110,504 - 58,192,287 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01157,158,938 - 57,240,841 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01161,609,370 - 61,659,355 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01162,580,983 - 62,634,961 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1161,605,937 - 62,634,803 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01160,784,803 - 60,791,455 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01165,711,729 - 65,765,391 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41158,201,167 - 58,283,274 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11158,254,734 - 58,341,104 (+)NCBI
Celera1156,188,270 - 56,269,944 (+)NCBICelera
Cytogenetic Map11q21NCBI
Gramd1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542713,957,834 - 14,044,749 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542713,957,746 - 14,044,473 (+)NCBIChiLan1.0ChiLan1.0
GRAMD1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22111,831,220 - 111,939,389 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13111,836,007 - 111,944,167 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03110,977,513 - 111,085,458 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13117,898,371 - 118,006,502 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3117,898,371 - 118,006,502 (+)Ensemblpanpan1.1panPan2
GRAMD1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13318,132,860 - 18,214,363 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3318,132,862 - 18,212,894 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3318,234,551 - 18,322,629 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03318,372,480 - 18,460,171 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3318,372,503 - 18,460,152 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13318,176,131 - 18,263,545 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03318,227,495 - 18,315,338 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03318,772,807 - 18,860,172 (+)NCBIUU_Cfam_GSD_1.0
Gramd1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602136,087,982 - 136,172,184 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365361,349,735 - 1,434,407 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365361,349,832 - 1,433,910 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRAMD1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13145,997,742 - 146,105,681 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113145,997,738 - 146,105,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213155,584,628 - 155,691,841 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GRAMD1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12266,917,212 - 67,021,575 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2266,918,899 - 67,021,409 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604199,447,420 - 99,551,307 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000022877   ⟹   ENSHGLP00000022663
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473134,571,894 - 34,608,859 (-)Ensembl
RefSeq Acc Id: XM_021263449   ⟹   XP_021119108
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473134,571,191 - 34,680,754 (-)NCBI
RefSeq Acc Id: XM_021263452   ⟹   XP_021119111
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473134,571,191 - 34,612,293 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021119108 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119111 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022663
  ENSHGLP00100041242
GenBank Protein JAO00768 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021119108   ⟸   XM_021263449
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JE35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021119111   ⟸   XM_021263452
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000022663   ⟸   ENSHGLT00000022877


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016163 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100042048 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000022877 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100056664 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro GRAM UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  VASt UniProtKB/TrEMBL
NCBI Gene Gramd1c ENTREZGENE
PANTHER PROTEIN ASTER-C UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam GRAM UniProtKB/TrEMBL
  VASt UniProtKB/TrEMBL
PROSITE VAST UniProtKB/TrEMBL
SMART GRAM UniProtKB/TrEMBL
UniProt A0A0P6JE35 ENTREZGENE, UniProtKB/TrEMBL