Serf2 (small EDRK-rich factor 2) - Rat Genome Database

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Gene: Serf2 (small EDRK-rich factor 2) Heterocephalus glaber
Analyze
Symbol: Serf2
Name: small EDRK-rich factor 2
RGD ID: 18932976
Description: INVOLVED IN protein destabilization (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480410,816,602 - 10,818,319 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Genomics

Comparative Map Data
Serf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480410,816,602 - 10,818,319 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SERF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,777,086 - 43,796,089 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1543,777,087 - 43,804,427 (+)EnsemblGRCh38hg38GRCh38
GRCh371544,069,284 - 44,088,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,871,769 - 41,875,579 (+)NCBINCBI36Build 36hg18NCBI36
Build 341541,856,589 - 41,873,531NCBI
Celera1520,973,939 - 20,977,749 (+)NCBICelera
Cytogenetic Map15q15.3NCBI
HuRef1520,892,156 - 20,911,149 (+)NCBIHuRef
CHM1_11544,187,550 - 44,206,540 (+)NCBICHM1_1
T2T-CHM13v2.01541,584,446 - 41,603,452 (+)NCBIT2T-CHM13v2.0
Serf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,279,679 - 121,283,901 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2121,279,676 - 121,288,794 (+)EnsemblGRCm39 Ensembl
GRCm382121,449,198 - 121,453,420 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,449,195 - 121,458,313 (+)EnsemblGRCm38mm10GRCm38
MGSCv372121,274,964 - 121,279,162 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362121,140,669 - 121,144,867 (+)NCBIMGSCv36mm8
Celera2122,599,965 - 122,604,184 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.39NCBI
Serf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,880,681 - 128,884,457 (+)NCBIGRCr8
mRatBN7.23108,426,960 - 108,430,736 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3108,426,887 - 108,430,724 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3112,101,393 - 112,105,169 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03120,696,914 - 120,700,690 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03118,357,319 - 118,361,095 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03113,415,757 - 113,419,417 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,415,774 - 113,417,478 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,955,877 - 119,959,536 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,255,260 - 108,258,848 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3107,328,338 - 107,331,926 (+)NCBICelera
Cytogenetic Map3q35NCBI
Serf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541610,251,533 - 10,252,429 (+)NCBIChiLan1.0ChiLan1.0
SERF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21633,029,185 - 33,045,870 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11537,205,801 - 37,207,602 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01522,752,018 - 22,754,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11540,842,929 - 40,844,998 (+)NCBIpanpan1.1PanPan1.1panPan2
SERF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,535,500 - 10,537,250 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,535,497 - 10,542,290 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,593,894 - 10,595,644 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03010,672,046 - 10,673,796 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3010,672,020 - 10,674,561 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13010,581,168 - 10,582,918 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03010,703,096 - 10,704,846 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03010,822,830 - 10,824,581 (+)NCBIUU_Cfam_GSD_1.0
Serf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864089,003,853 - 89,005,921 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364716,851,916 - 6,853,989 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,761,345 - 127,767,520 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,765,760 - 127,767,518 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,595,270 - 142,597,087 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SERF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,250,718 - 39,252,786 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048101,739,599 - 101,741,667 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004861704   ⟹   XP_004861761
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480410,816,603 - 10,818,229 (+)NCBI
RefSeq Acc Id: XM_013078448   ⟹   XP_012933902
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480410,816,602 - 10,818,319 (+)NCBI
RefSeq Acc Id: XM_021241768   ⟹   XP_021097427
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480410,816,721 - 10,818,229 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004861761 (Get FASTA)   NCBI Sequence Viewer  
  XP_012933902 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097427 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008173
  ENSHGLP00000008174
RefSeq Acc Id: XP_012933902   ⟸   XM_013078448
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R3Z3 (UniProtKB/TrEMBL),   G5BM55 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861761   ⟸   XM_004861704
- Peptide Label: isoform X2
- UniProtKB: A0AAX6PXC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097427   ⟸   XM_021241768
- Peptide Label: isoform X3
- UniProtKB: A0AAX6RLC1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005915 ENTREZGENE
Ensembl Transcript ENSHGLT00000008262 ENTREZGENE
  ENSHGLT00000008263 ENTREZGENE
InterPro SERF-like_N UniProtKB/TrEMBL
  SERF1/2 UniProtKB/TrEMBL
NCBI Gene Serf2 ENTREZGENE
PANTHER RCG26176, ISOFORM CRA_A UniProtKB/TrEMBL
  SMALL EDRK-RICH FACTOR 1 UniProtKB/TrEMBL
Pfam 4F5 UniProtKB/TrEMBL
UniProt A0AAX6PXC7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R3Z3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RLC1 ENTREZGENE, UniProtKB/TrEMBL
  G5BM55 ENTREZGENE, UniProtKB/TrEMBL