SERF2 (small EDRK-rich factor 2) - Rat Genome Database

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Gene: SERF2 (small EDRK-rich factor 2) Sus scrofa
Analyze
Symbol: SERF2
Name: small EDRK-rich factor 2
RGD ID: 13948828
Description: INVOLVED IN protein destabilization (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,761,345 - 127,767,520 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,765,760 - 127,767,518 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,595,270 - 142,597,087 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
SERF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,761,345 - 127,767,520 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,765,760 - 127,767,518 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,595,270 - 142,597,087 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SERF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,777,086 - 43,796,089 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1543,777,087 - 43,804,427 (+)EnsemblGRCh38hg38GRCh38
GRCh371544,069,284 - 44,088,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,871,769 - 41,875,579 (+)NCBINCBI36Build 36hg18NCBI36
Build 341541,856,589 - 41,873,531NCBI
Celera1520,973,939 - 20,977,749 (+)NCBICelera
Cytogenetic Map15q15.3NCBI
HuRef1520,892,156 - 20,911,149 (+)NCBIHuRef
CHM1_11544,187,550 - 44,206,540 (+)NCBICHM1_1
T2T-CHM13v2.01541,584,446 - 41,603,452 (+)NCBIT2T-CHM13v2.0
Serf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,279,679 - 121,283,901 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2121,279,676 - 121,288,794 (+)EnsemblGRCm39 Ensembl
GRCm382121,449,198 - 121,453,420 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,449,195 - 121,458,313 (+)EnsemblGRCm38mm10GRCm38
MGSCv372121,274,964 - 121,279,162 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362121,140,669 - 121,144,867 (+)NCBIMGSCv36mm8
Celera2122,599,965 - 122,604,184 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.39NCBI
Serf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,880,681 - 128,884,457 (+)NCBIGRCr8
mRatBN7.23108,426,960 - 108,430,736 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3108,426,887 - 108,430,724 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3112,101,393 - 112,105,169 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03120,696,914 - 120,700,690 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03118,357,319 - 118,361,095 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03113,415,757 - 113,419,417 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,415,774 - 113,417,478 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,955,877 - 119,959,536 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,255,260 - 108,258,848 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3107,328,338 - 107,331,926 (+)NCBICelera
Cytogenetic Map3q35NCBI
Serf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541610,251,533 - 10,252,429 (+)NCBIChiLan1.0ChiLan1.0
SERF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21633,029,185 - 33,045,870 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11537,205,801 - 37,207,602 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01522,752,018 - 22,754,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11540,842,929 - 40,844,998 (+)NCBIpanpan1.1PanPan1.1panPan2
SERF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,535,500 - 10,537,250 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,535,497 - 10,542,290 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,593,894 - 10,595,644 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03010,672,046 - 10,673,796 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3010,672,020 - 10,674,561 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13010,581,168 - 10,582,918 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03010,703,096 - 10,704,846 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03010,822,830 - 10,824,581 (+)NCBIUU_Cfam_GSD_1.0
Serf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864089,003,853 - 89,005,921 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364716,851,916 - 6,853,989 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,250,718 - 39,252,786 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048101,739,599 - 101,741,667 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Serf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480410,816,602 - 10,818,319 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SERF2
40 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 3 22 3 2 4 12 10 22 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000031142   ⟹   ENSSSCP00000026916
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1127,765,721 - 127,767,505 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000079036   ⟹   ENSSSCP00000064104
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1127,765,839 - 127,767,513 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000088612   ⟹   ENSSSCP00000063596
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1127,761,345 - 127,767,520 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000095908   ⟹   ENSSSCP00000075240
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1127,764,838 - 127,767,520 (-)Ensembl
RefSeq Acc Id: NM_001190206   ⟹   NP_001177135
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11127,765,760 - 127,767,518 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001177135 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000063596.1
  ENSSSCP00000064104.1
  ENSSSCP00000075240.1
RefSeq Acc Id: NP_001177135   ⟸   NM_001190206
- Sequence:
Ensembl Acc Id: ENSSSCP00000063596   ⟸   ENSSSCT00000088612
Ensembl Acc Id: ENSSSCP00000064104   ⟸   ENSSSCT00000079036
Ensembl Acc Id: ENSSSCP00000026916   ⟸   ENSSSCT00000031142
Ensembl Acc Id: ENSSSCP00000075240   ⟸   ENSSSCT00000095908
Protein Domains
Small EDRK-rich factor-like N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024263 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000079036.2 UniProtKB/TrEMBL
  ENSSSCT00000088612.2 UniProtKB/TrEMBL
  ENSSSCT00000095908.1 UniProtKB/TrEMBL
InterPro SERF1/2 UniProtKB/TrEMBL
  Uncharacterised_SERF_N UniProtKB/TrEMBL
NCBI Gene SERF2 ENTREZGENE
PANTHER PTHR13596 UniProtKB/TrEMBL
  RCG26176, ISOFORM CRA_A UniProtKB/TrEMBL
  SMALL EDRK-RICH FACTOR 2 UniProtKB/TrEMBL
Pfam 4F5 UniProtKB/TrEMBL
UniProt A0A4X1VB23_PIG UniProtKB/TrEMBL
  A0A5G2QPV8_PIG UniProtKB/TrEMBL
  I3LS25_PIG UniProtKB/TrEMBL
UniProt Secondary A0A5G2QI89 UniProtKB/TrEMBL