SERF2 (small EDRK-rich factor 2) - Rat Genome Database

Name: SERF2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SERF2 (small EDRK-rich factor 2) Homo sapiens

Analyze

Symbol:

SERF2

Name:

small EDRK-rich factor 2

RGD ID:

1344606

HGNC Page

HGNC:10757

Description:

Involved in protein destabilization. Predicted to be located in cytosol and nucleus.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

4F5REL; FAM2C; FLJ20431; FLJ37527; FLJ38557; gastric cancer-related protein VRG107; H4F5rel; HsT17089; MGC48826; protein 4F5-related

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Serf2 (small EDRK-rich factor 2)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther
Rattus norvegicus (Norway rat):	Serf2 (small EDRK-rich factor 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther
Chinchilla lanigera (long-tailed chinchilla):	Serf2 (small EDRK-rich factor 2)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	SERF2 (small EDRK-rich factor 2)	NCBI	Ortholog
Canis lupus familiaris (dog):	SERF2 (small EDRK-rich factor 2)	HGNC	EggNOG, Ensembl, OMA, Panther
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Serf2 (small EDRK-rich factor 2)	NCBI	Ortholog
Sus scrofa (pig):	SERF2 (small EDRK-rich factor 2)	HGNC	NCBI
Chlorocebus sabaeus (green monkey):	SERF2 (small EDRK-rich factor 2)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Serf2 (small EDRK-rich factor 2)	NCBI	Ortholog
Other homologs ²
Canis lupus familiaris (dog):	LOC119873569 (uncharacterized LOC119873569)	HGNC	Ensembl
Alliance orthologs ³
Mus musculus (house mouse):	Serf2 (small EDRK-rich factor 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Rattus norvegicus (Norway rat):	Serf1 (small EDRK-rich factor 1)	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Rattus norvegicus (Norway rat):	Serf2 (small EDRK-rich factor 2)	Alliance	DIOPT (HGNC)
Danio rerio (zebrafish):	serf2 (small EDRK-rich factor 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Danio rerio (zebrafish):	si:ch211-39k3.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|ZFIN)
Drosophila melanogaster (fruit fly):	CG17931	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YDL085C-A	Alliance	DIOPT (InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	moag-4	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	serf2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus laevis (African clawed frog):	serf2.L	Alliance	DIOPT (Xenbase)

Related Pseudogenes:

LOC100131747 LOC100131877

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	43,777,086 - 43,796,089 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	43,777,087 - 43,804,427 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	44,069,284 - 44,088,287 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	41,871,769 - 41,875,579 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	41,856,589 - 41,873,531	NCBI
Celera	15	20,973,939 - 20,977,749 (+)	NCBI		Celera
Cytogenetic Map	15	q15.3	NCBI
HuRef	15	20,892,156 - 20,911,149 (+)	NCBI		HuRef
CHM1_1	15	44,187,550 - 44,206,540 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	41,584,446 - 41,603,452 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (IAGP)

colorectal cancer (IAGP)

genetic disease (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

5-fluorouracil (EXP)

acrolein (EXP)

all-trans-retinoic acid (EXP)

alpha-pinene (EXP)

benzo[a]pyrene (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

chloropicrin (EXP)

chlorpyrifos (ISO)

cobalt dichloride (EXP)

copper(II) sulfate (EXP)

dorsomorphin (EXP)

doxorubicin (EXP)

fenthion (ISO)

flutamide (ISO)

folic acid (ISO)

gentamycin (ISO)

methotrexate (EXP)

mifepristone (EXP)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (ISO)

nefazodone (ISO)

ozone (EXP)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (EXP)

SB 431542 (EXP)

testosterone (ISO)

tetrachloromethane (ISO)

thioacetamide (ISO)

toluene (ISO)

urethane (EXP)

valproic acid (EXP)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein destabilization (IMP)

Cellular Component

cytosol (ISS)

nucleus (ISS)

Molecular Function

molecular_function (ND)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:9700202	PMID:9731538	PMID:11042152	PMID:12477932	PMID:14702039	PMID:15231747	PMID:15342556	PMID:15489334	PMID:16169070	PMID:16189514	PMID:16344560
PMID:16713569	PMID:16916647	PMID:16927404	PMID:17568003	PMID:20723760	PMID:25416956	PMID:26972000	PMID:27107012	PMID:27229929	PMID:27609421	PMID:30021884	PMID:30196744
PMID:30291272	PMID:32694731	PMID:33838681	PMID:33961781	PMID:34617299	PMID:35944360	PMID:36369321	PMID:36373674

Genomics

Comparative Map Data

SERF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	43,777,086 - 43,796,089 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	43,777,087 - 43,804,427 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	44,069,284 - 44,088,287 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	41,871,769 - 41,875,579 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	41,856,589 - 41,873,531	NCBI
Celera	15	20,973,939 - 20,977,749 (+)	NCBI		Celera
Cytogenetic Map	15	q15.3	NCBI
HuRef	15	20,892,156 - 20,911,149 (+)	NCBI		HuRef
CHM1_1	15	44,187,550 - 44,206,540 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	41,584,446 - 41,603,452 (+)	NCBI		T2T-CHM13v2.0

Serf2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	121,279,679 - 121,283,901 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	121,279,676 - 121,288,794 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	121,449,198 - 121,453,420 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	121,449,195 - 121,458,313 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	121,274,964 - 121,279,162 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	121,140,669 - 121,144,867 (+)	NCBI		MGSCv36	mm8
Celera	2	122,599,965 - 122,604,184 (+)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	60.39	NCBI

Serf2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	128,880,681 - 128,884,457 (+)	NCBI		GRCr8
mRatBN7.2	3	108,426,960 - 108,430,736 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	108,426,887 - 108,430,724 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	112,101,393 - 112,105,169 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	120,696,914 - 120,700,690 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	118,357,319 - 118,361,095 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	113,415,757 - 113,419,417 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	113,415,774 - 113,417,478 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	119,955,877 - 119,959,536 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	108,255,260 - 108,258,848 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	107,328,338 - 107,331,926 (+)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

Serf2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955416	10,251,533 - 10,252,429 (+)	NCBI	ChiLan1.0	ChiLan1.0

SERF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	33,029,185 - 33,045,870 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	37,205,801 - 37,207,602 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	22,752,018 - 22,754,220 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	40,842,929 - 40,844,998 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

SERF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	10,535,500 - 10,537,250 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	10,535,497 - 10,542,290 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	10,593,894 - 10,595,644 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	10,672,046 - 10,673,796 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	10,672,020 - 10,674,561 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	10,581,168 - 10,582,918 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	10,703,096 - 10,704,846 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	10,822,830 - 10,824,581 (+)	NCBI		UU_Cfam_GSD_1.0

Serf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	89,003,853 - 89,005,921 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936471	6,851,916 - 6,853,989 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SERF2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	127,761,345 - 127,767,520 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	127,765,760 - 127,767,518 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	142,595,270 - 142,597,087 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SERF2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	39,250,718 - 39,252,786 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	101,739,599 - 101,741,667 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Serf2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624804	10,816,602 - 10,818,319 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SERF2
6 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
NM_001199877.1(SERF2):c.-527+508C>A	single nucleotide variant	Lung cancer [RCV000099493]	Chr15:43778010 [GRCh38] Chr15:44070208 [GRCh37] Chr15:15q15.3	uncertain significance
GRCh38/hg38 15q15.2-15.3(chr15:42566761-43847106)x1	copy number loss	See cases [RCV000137921]	Chr15:42566761..43847106 [GRCh38] Chr15:42858959..44139304 [GRCh37] Chr15:40646251..41926596 [NCBI36] Chr15:15q15.2-15.3	likely pathogenic
GRCh38/hg38 15q15.3-21.1(chr15:43696563-44541320)x1	copy number loss	See cases [RCV000143109]	Chr15:43696563..44541320 [GRCh38] Chr15:43988761..44833518 [GRCh37] Chr15:41776053..42620810 [NCBI36] Chr15:15q15.3-21.1	uncertain significance
GRCh37/hg19 15q15.1-26.3(chr15:41745084-102354798)x4	copy number gain	See cases [RCV000447123]	Chr15:41745084..102354798 [GRCh37] Chr15:15q15.1-26.3	pathogenic
GRCh37/hg19 15q15.2-21.2(chr15:42850434-49592633)x1	copy number loss	See cases [RCV000447035]	Chr15:42850434..49592633 [GRCh37] Chr15:15q15.2-21.2	pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:20733395-102511616)x4	copy number gain	See cases [RCV000447765]	Chr15:20733395..102511616 [GRCh37] Chr15:15q11.2-26.3	pathogenic
GRCh37/hg19 15q15.1-21.2(chr15:41689327-52446981)x1	copy number loss	See cases [RCV000448968]	Chr15:41689327..52446981 [GRCh37] Chr15:15q15.1-21.2	pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)x3	copy number gain	See cases [RCV000510717]	Chr15:22770422..102429112 [GRCh37] Chr15:15q11.2-26.3	pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)	copy number gain	See cases [RCV000512019]	Chr15:22770422..102429112 [GRCh37] Chr15:15q11.2-26.3	pathogenic
Single allele	duplication	not provided [RCV000677926]	Chr15:31115047..102354857 [GRCh37] Chr15:15q13.2-26.3	pathogenic
GRCh37/hg19 15q15.3-21.3(chr15:43759773-53252240)x1	copy number loss	not provided [RCV000683686]	Chr15:43759773..53252240 [GRCh37] Chr15:15q15.3-21.3	pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20071673-102461162)x3	copy number gain	not provided [RCV000751156]	Chr15:20071673..102461162 [GRCh37] Chr15:15q11.1-26.3	pathogenic
GRCh37/hg19 15q15.3-21.1(chr15:44038893-44838835)x1	copy number loss	not provided [RCV000751289]	Chr15:44038893..44838835 [GRCh37] Chr15:15q15.3-21.1	uncertain significance
GRCh37/hg19 15q11.1-26.3(chr15:20016811-102493540)x3	copy number gain	not provided [RCV000751155]	Chr15:20016811..102493540 [GRCh37] Chr15:15q11.1-26.3	pathogenic
GRCh37/hg19 15q15.2-15.3(chr15:43420601-44198616)x3	copy number gain	not provided [RCV001006684]	Chr15:43420601..44198616 [GRCh37] Chr15:15q15.2-15.3	uncertain significance
NC_000015.9:g.(?_32964879)_(91358519_?)dup	duplication	Bloom syndrome [RCV001343104]\|Familial colorectal cancer [RCV001325176]	Chr15:32964879..91358519 [GRCh37] Chr15:15q13.3-26.1	uncertain significance
GRCh37/hg19 15q15.2-21.2(chr15:42850434-49592633)	copy number loss	not specified [RCV002052466]	Chr15:42850434..49592633 [GRCh37] Chr15:15q15.2-21.2	pathogenic
GRCh37/hg19 15q15.2-15.3(chr15:43215243-44632384)x1	copy number loss	not provided [RCV001829144]	Chr15:43215243..44632384 [GRCh37] Chr15:15q15.2-15.3	uncertain significance
NM_001018108.4(SERF2):c.174C>T (p.Pro58=)	single nucleotide variant	Inborn genetic diseases [RCV002836896]	Chr15:43793767 [GRCh38] Chr15:44085965 [GRCh37] Chr15:15q15.3	uncertain significance
NM_001018108.4(SERF2):c.*173C>A	single nucleotide variant	Inborn genetic diseases [RCV002955332]	Chr15:43793946 [GRCh38] Chr15:44086144 [GRCh37] Chr15:15q15.3	uncertain significance
NM_001018108.4(SERF2):c.*50G>A	single nucleotide variant	Inborn genetic diseases [RCV002955565]	Chr15:43793823 [GRCh38] Chr15:44086021 [GRCh37] Chr15:15q15.3	uncertain significance
NM_001018108.4(SERF2):c.*48G>C	single nucleotide variant	Inborn genetic diseases [RCV002770026]	Chr15:43793821 [GRCh38] Chr15:44086019 [GRCh37] Chr15:15q15.3	uncertain significance
NM_001018108.4(SERF2):c.117-63C>G	single nucleotide variant	Inborn genetic diseases [RCV003213634]	Chr15:43793647 [GRCh38] Chr15:44085845 [GRCh37] Chr15:15q15.3	uncertain significance
Single allele	deletion	not provided [RCV003448697]	Chr15:41321409..51718601 [GRCh37] Chr15:15q15.1-21.2	pathogenic
GRCh37/hg19 15q11.2-21.2(chr15:22770421-50347130)x3	copy number gain	not specified [RCV003987108]	Chr15:22770421..50347130 [GRCh37] Chr15:15q11.2-21.2	pathogenic
GRCh37/hg19 15q15.3(chr15:43988438-44216507)x3	copy number gain	not provided [RCV003885469]	Chr15:43988438..44216507 [GRCh37] Chr15:15q15.3	uncertain significance

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	7041
Count of miRNA genes:	1261
Interacting mature miRNAs:	1690
Transcripts:	ENST00000249786, ENST00000339624, ENST00000381359, ENST00000402131, ENST00000403425, ENST00000409291, ENST00000409614, ENST00000409617, ENST00000409646, ENST00000409960, ENST00000430901, ENST00000445816, ENST00000448830, ENST00000474290, ENST00000475927, ENST00000486144, ENST00000594896, ENST00000600633
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

D15S797

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,087,252 - 44,087,522	UniSTS	GRCh37
Build 36	15	41,874,544 - 41,874,814	RGD	NCBI36
Celera	15	20,976,714 - 20,976,984	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,114 - 20,910,384	UniSTS

ECD03706

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,087,177 - 44,087,963	UniSTS	GRCh37
Build 36	15	41,874,469 - 41,875,255	RGD	NCBI36
Celera	15	20,976,639 - 20,977,425	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,039 - 20,910,825	UniSTS

ECD03861

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,083,763 - 44,084,544	UniSTS	GRCh37
Build 36	15	41,871,055 - 41,871,836	RGD	NCBI36
Celera	15	20,973,225 - 20,974,006	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,906,625 - 20,907,406	UniSTS

ECD03905

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,086,318 - 44,087,098	UniSTS	GRCh37
Build 36	15	41,873,610 - 41,874,390	RGD	NCBI36
Celera	15	20,975,780 - 20,976,560	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,909,180 - 20,909,960	UniSTS

ECD04064

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,084,661 - 44,085,436	UniSTS	GRCh37
Build 36	15	41,871,953 - 41,872,728	RGD	NCBI36
Celera	15	20,974,123 - 20,974,898	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,907,523 - 20,908,298	UniSTS

ECD04146

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,085,482 - 44,086,255	UniSTS	GRCh37
Build 36	15	41,872,774 - 41,873,547	RGD	NCBI36
Celera	15	20,974,944 - 20,975,717	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,908,344 - 20,909,117	UniSTS

REN37632

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,069,397 - 44,069,622	UniSTS	GRCh37
Build 36	15	41,856,689 - 41,856,914	RGD	NCBI36
Celera	15	20,958,859 - 20,959,084	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,892,259 - 20,892,484	UniSTS

REN37678

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,083,044 - 44,083,278	UniSTS	GRCh37
Build 36	15	41,870,336 - 41,870,570	RGD	NCBI36
Celera	15	20,972,506 - 20,972,740	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,905,906 - 20,906,140	UniSTS

REN37679

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,083,254 - 44,083,478	UniSTS	GRCh37
Build 36	15	41,870,546 - 41,870,770	RGD	NCBI36
Celera	15	20,972,716 - 20,972,940	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,906,116 - 20,906,340	UniSTS

REN37680

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,083,615 - 44,083,854	UniSTS	GRCh37
Build 36	15	41,870,907 - 41,871,146	RGD	NCBI36
Celera	15	20,973,077 - 20,973,316	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,906,477 - 20,906,716	UniSTS

REN37681

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,083,831 - 44,084,074	UniSTS	GRCh37
Build 36	15	41,871,123 - 41,871,366	RGD	NCBI36
Celera	15	20,973,293 - 20,973,536	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,906,693 - 20,906,936	UniSTS

REN37682

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,084,006 - 44,084,232	UniSTS	GRCh37
Build 36	15	41,871,298 - 41,871,524	RGD	NCBI36
Celera	15	20,973,468 - 20,973,694	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,906,868 - 20,907,094	UniSTS

REN37683

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,084,179 - 44,084,446	UniSTS	GRCh37
Build 36	15	41,871,471 - 41,871,738	RGD	NCBI36
Celera	15	20,973,641 - 20,973,908	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,907,041 - 20,907,308	UniSTS

REN37684

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,084,316 - 44,084,560	UniSTS	GRCh37
Build 36	15	41,871,608 - 41,871,852	RGD	NCBI36
Celera	15	20,973,778 - 20,974,022	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,907,178 - 20,907,422	UniSTS

REN37685

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,084,525 - 44,084,772	UniSTS	GRCh37
Build 36	15	41,871,817 - 41,872,064	RGD	NCBI36
Celera	15	20,973,987 - 20,974,234	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,907,387 - 20,907,634	UniSTS

REN37686

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,084,742 - 44,084,995	UniSTS	GRCh37
Build 36	15	41,872,034 - 41,872,287	RGD	NCBI36
Celera	15	20,974,204 - 20,974,457	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,907,604 - 20,907,857	UniSTS

REN37687

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,084,967 - 44,085,234	UniSTS	GRCh37
Build 36	15	41,872,259 - 41,872,526	RGD	NCBI36
Celera	15	20,974,429 - 20,974,696	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,907,829 - 20,908,096	UniSTS

REN37688

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,085,212 - 44,085,459	UniSTS	GRCh37
Build 36	15	41,872,504 - 41,872,751	RGD	NCBI36
Celera	15	20,974,674 - 20,974,921	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,908,074 - 20,908,321	UniSTS

REN37689

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,085,436 - 44,085,683	UniSTS	GRCh37
Build 36	15	41,872,728 - 41,872,975	RGD	NCBI36
Celera	15	20,974,898 - 20,975,145	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,908,298 - 20,908,545	UniSTS

REN37690

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,085,655 - 44,085,902	UniSTS	GRCh37
Build 36	15	41,872,947 - 41,873,194	RGD	NCBI36
Celera	15	20,975,117 - 20,975,364	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,908,517 - 20,908,764	UniSTS

REN37691

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	95,936,096 - 95,936,348	UniSTS	GRCh37
GRCh37	15	44,085,882 - 44,086,134	UniSTS	GRCh37
Build 36	7	95,774,032 - 95,774,284	RGD	NCBI36
Celera	15	20,975,344 - 20,975,596	UniSTS
Celera	7	90,636,163 - 90,636,415	RGD
Cytogenetic Map	7	q21.3	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,908,744 - 20,908,996	UniSTS
HuRef	7	90,544,365 - 90,544,617	UniSTS
CRA_TCAGchr7v2	7	95,265,163 - 95,265,415	UniSTS

REN37692

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,086,115 - 44,086,345	UniSTS	GRCh37
Build 36	15	41,873,407 - 41,873,637	RGD	NCBI36
Celera	15	20,975,577 - 20,975,807	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,908,977 - 20,909,207	UniSTS

REN37693

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,086,318 - 44,086,567	UniSTS	GRCh37
Build 36	15	41,873,610 - 41,873,859	RGD	NCBI36
Celera	15	20,975,780 - 20,976,029	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,909,180 - 20,909,429	UniSTS

REN37694

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,086,558 - 44,086,803	UniSTS	GRCh37
Build 36	15	41,873,850 - 41,874,095	RGD	NCBI36
Celera	15	20,976,020 - 20,976,265	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,909,420 - 20,909,665	UniSTS

REN37695

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,086,772 - 44,087,013	UniSTS	GRCh37
Build 36	15	41,874,064 - 41,874,305	RGD	NCBI36
Celera	15	20,976,234 - 20,976,475	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,909,634 - 20,909,875	UniSTS

REN37696

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,086,980 - 44,087,226	UniSTS	GRCh37
Build 36	15	41,874,272 - 41,874,518	RGD	NCBI36
Celera	15	20,976,442 - 20,976,688	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,909,842 - 20,910,088	UniSTS

REN37697

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,087,212 - 44,087,465	UniSTS	GRCh37
Build 36	15	41,874,504 - 41,874,757	RGD	NCBI36
Celera	15	20,976,674 - 20,976,927	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,074 - 20,910,327	UniSTS

REN37698

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,087,460 - 44,087,684	UniSTS	GRCh37
Build 36	15	41,874,752 - 41,874,976	RGD	NCBI36
Celera	15	20,976,922 - 20,977,146	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,322 - 20,910,546	UniSTS

REN37699

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,087,657 - 44,087,905	UniSTS	GRCh37
Build 36	15	41,874,949 - 41,875,197	RGD	NCBI36
Celera	15	20,977,119 - 20,977,367	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,519 - 20,910,767	UniSTS

REN37700

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,087,871 - 44,088,120	UniSTS	GRCh37
Build 36	15	41,875,163 - 41,875,412	RGD	NCBI36
Celera	15	20,977,333 - 20,977,582	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,733 - 20,910,982	UniSTS

REN37701

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,088,099 - 44,088,346	UniSTS	GRCh37
Build 36	15	41,875,391 - 41,875,638	RGD	NCBI36
Celera	15	20,977,561 - 20,977,808	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,961 - 20,911,208	UniSTS

REN37702

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,088,335 - 44,088,590	UniSTS	GRCh37
Build 36	15	41,875,627 - 41,875,882	RGD	NCBI36
Celera	15	20,977,797 - 20,978,052	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,911,197 - 20,911,452	UniSTS

RH41787

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,086,644 - 44,086,759	UniSTS	GRCh37
Build 36	15	41,873,936 - 41,874,051	RGD	NCBI36
Celera	15	20,976,106 - 20,976,221	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,909,506 - 20,909,621	UniSTS
GeneMap99-GB4 RH Map	15	157.3	UniSTS

WI-18240

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,088,108 - 44,088,257	UniSTS	GRCh37
Build 36	15	41,875,400 - 41,875,549	RGD	NCBI36
Celera	15	20,977,570 - 20,977,719	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,970 - 20,911,119	UniSTS
GeneMap99-GB4 RH Map	15	169.99	UniSTS
Whitehead-RH Map	15	119.9	UniSTS
NCBI RH Map	15	238.1	UniSTS

RH47782

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,088,065 - 44,088,237	UniSTS	GRCh37
Build 36	15	41,875,357 - 41,875,529	RGD	NCBI36
Celera	15	20,977,527 - 20,977,699	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,910,927 - 20,911,099	UniSTS
GeneMap99-GB4 RH Map	15	159.81	UniSTS
NCBI RH Map	15	169.1	UniSTS

stSG627949

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,082,570 - 44,083,782	UniSTS	GRCh37
Build 36	15	41,869,862 - 41,871,074	RGD	NCBI36
Celera	15	20,972,032 - 20,973,244	RGD
HuRef	15	20,905,432 - 20,906,644	UniSTS

stSG627950

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,083,763 - 44,085,213	UniSTS	GRCh37
Build 36	15	41,871,055 - 41,872,505	RGD	NCBI36
Celera	15	20,973,225 - 20,974,675	RGD
HuRef	15	20,906,625 - 20,908,075	UniSTS

stSG627951

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,085,213 - 44,086,487	UniSTS	GRCh37
Build 36	15	41,872,505 - 41,873,779	RGD	NCBI36
Celera	15	20,974,675 - 20,975,949	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,908,075 - 20,909,349	UniSTS

stSG627952

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	15	44,086,512 - 44,087,947	UniSTS	GRCh37
Build 36	15	41,873,804 - 41,875,239	RGD	NCBI36
Celera	15	20,975,974 - 20,977,409	RGD
Cytogenetic Map	15	q15.3	UniSTS
HuRef	15	20,909,374 - 20,910,809	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

visual system

adipose tissue

appendage

entire extraembryonic component

pharyngeal arch

High

Medium

2439

2991

1725

623

1951

464

4357

2197

3734

419

1448

1613

175

1204

2788

Low

Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001018108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001199875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001199876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001199877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001199878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_037672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC018512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF073298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF320073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK000479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK094846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK307547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL049976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AV713454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC008214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC009869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC015491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC022326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC038893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI260545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BM970646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP317864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ061048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA051124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA302996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DB060650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF212272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000249786 ⟹ ENSP00000249786

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,320 - 43,796,079 (+)	Ensembl

RefSeq Acc Id:

ENST00000339624 ⟹ ENSP00000339647

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,347 - 43,794,046 (+)	Ensembl

RefSeq Acc Id:

ENST00000381359 ⟹ ENSP00000370764

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,777,100 - 43,794,595 (+)	Ensembl

RefSeq Acc Id:

ENST00000402131 ⟹ ENSP00000386044

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,368 - 43,793,975 (+)	Ensembl

RefSeq Acc Id:

ENST00000403425 ⟹ ENSP00000384300

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,368 - 43,794,046 (+)	Ensembl

RefSeq Acc Id:

ENST00000409291 ⟹ ENSP00000387041

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,347 - 43,800,279 (+)	Ensembl

RefSeq Acc Id:

ENST00000409614 ⟹ ENSP00000386783

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,839 - 43,794,046 (+)	Ensembl

RefSeq Acc Id:

ENST00000409617 ⟹ ENSP00000386290

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,354 - 43,804,427 (+)	Ensembl

RefSeq Acc Id:

ENST00000409646 ⟹ ENSP00000386316

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,330 - 43,799,850 (+)	Ensembl

RefSeq Acc Id:

ENST00000409960 ⟹ ENSP00000387187

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,330 - 43,794,444 (+)	Ensembl

RefSeq Acc Id:

ENST00000430901 ⟹ ENSP00000394660

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,377 - 43,799,007 (+)	Ensembl

RefSeq Acc Id:

ENST00000445816 ⟹ ENSP00000400178

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,337 - 43,796,089 (+)	Ensembl

RefSeq Acc Id:

ENST00000448830 ⟹ ENSP00000391027

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,354 - 43,804,427 (+)	Ensembl

RefSeq Acc Id:

ENST00000474290

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,777,087 - 43,778,116 (+)	Ensembl

RefSeq Acc Id:

ENST00000475927

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,368 - 43,793,422 (+)	Ensembl

RefSeq Acc Id:

ENST00000486144

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,792,330 - 43,793,950 (+)	Ensembl

RefSeq Acc Id:

ENST00000630046 ⟹ ENSP00000486542

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,791,842 - 43,799,079 (+)	Ensembl

RefSeq Acc Id:

ENST00000674451 ⟹ ENSP00000501422

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	43,791,842 - 43,793,348 (+)	Ensembl

RefSeq Acc Id:

NM_001018108 ⟹ NP_001018118

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	43,792,320 - 43,796,079 (+)	NCBI
GRCh37	15	44,069,294 - 44,088,287 (+)	ENTREZGENE
Build 36	15	41,871,769 - 41,875,579 (+)	NCBI Archive
Celera	15	20,973,939 - 20,977,749 (+)	RGD
HuRef	15	20,892,156 - 20,911,149 (+)	ENTREZGENE
CHM1_1	15	44,202,293 - 44,206,540 (+)	NCBI
T2T-CHM13v2.0	15	41,599,683 - 41,603,442 (+)	NCBI

Sequence:

show sequence

AACGTCCGACAGAACGAGGGGACGTAACGGAGGCAGGTTGGAGCCGCTGCCGTCGCCATGACCC
GCGGTAACCAGCGTGAGCTCGCCCGCCAGAAGAATATGAAAAAGCAGAGCGACTCGGTTAAGGG
AAAGCGCCGAGATGACGGGCTTTCTGCTGCCGCCCGCAAGCAGAGGGACTCGGAGATCATGCAG
CAGAAGCAGAAAAAGGCAAACGAGAAGAAGGAGGAACCCAAGTAGCTTTGTGGCTTCGTGTCCA
ACCCTCTTGCCCTTCGCCTGTGTGCCTGGAGCCAGTCCCACCACGCTCGCGTTTCCTCCTGTAG
TGCTCACAGGTCCCAGCACCGATGGCATTCCCTTTGCCCTGAGTCTGCAGCGGGTCCCTTTTGT
GCTTCCTTCCCCTCAGGTAGCCTCTCTCCCCCTGGGCCACTCCCGGGGGTGAGGGGGTTACCCC
TTCCCAGTGTTTTTTATTCCTGTGGGGCTCACCCCAAAGTATTAAAAGTAGCTTTGTAATTCCT
TGAGCGCCTGGTTTGACTGGGGACTTGGGGGGATGGGGTTGGAAGAATGACTGCCCTTTCCCAC
CAAAAAAGGGAGAACTCTTTAGATTCAGATTGTGGGTATGTAGACTTAATAAGTGAAACATCAC
AGAAGAAGCCTTTATTATACAATGACAACCAAACAAGTACTCCGGATATGCAGTAGAGGAATCC
TCTAAGAACCATAGAGACTTCTTTTCTGTGATTTTTGTTCCCCACCCTTGAACACCATCTCTAG
GATGGAGTTGGCCTAAGAGTGAATGCTGCAAGATCTGTGTTTATGCCTCTTTTCCTCATTCTTC
CTCAGTTTGTTCGTCTGCTTGAAAGTTGGCCAAAAAATCCTGCTGCTCACCGACTTCCCGTGGT
CAGCTGCTGTCAAGCGTTCACTTTCTCTTCTGTCATTCCTCATGGAATGAGGGTGGTTTTGTCT
TCCCGCTTCCCTTGACCTCAAAATCAGGATTAAAACCTGGGGTAGCCTCTGTGCTCCTTTCTTC
TATGCCCTGGTTTGTTCTGTGGTTCTGGGCTTCTTATATCCGTGTGCCCAGGGCTGAACTCCTT
ATTTTCCTTTCTCCAAGGGCAGAGCCGAGTCTTCAGTCCCTGTTGGTCTTTCCCCACCCCCACT
TCCAGCCCAAGAGCCAGGAAAGGGCTGGTGCCACACTGTCTGCTGGGATCAGCGGTGGTTCTTT
GAGCTGCTGATTTGGGTGTTAGGCTCTTGAGCTGGGATGCAGATGTAACAGTAGCTCCAGTGAG
TCAGACACTCTGCCCAGCACATTAGACTGTGTTTGACCACTTCTTCCAGTTCATAGTATTGACT
TCAGCCCAAACGGAGATAACTCCCTGTGTGTCCTTGAGGTATTGAGCTGGGCTGGACAGCTCCC
CTTGAGCCAACTCTAGGAGTACAATGTCAGGGGAACCCCAGTTTGTGAAAAGGACTTAGACTGG
AGGATATTTGTTATCTGGGGATATGATGCGGTGGCGGCGGCGCCTCAAGATAAGGGGCTGGGGT
TTCTGGGTGGGGGGCCAACAGAGTGGTGCCAGTAACAGCCCCAGATAGAGGAGTACGCAGGCCC
AGCATGAGGCAACCTTGACCCAGAAGGTGGCCCAGCTACCCTTGATGAAGGTCTTTTCCAGTTC
TGCTCCCTCATAGCTGTGTAACCAAAGGCTCTGGTTAGAGAATATGAAGGGCCTTAGCTTTTAG
ACCTGTTCTACCTCCTCACCAAATATAATGGCAGACCCATGTGTGTCTGGAATGGCCTTGAATT
GCTCTTTCCTTAAAATAGCTAGCTCTTCAGGAGAGTATCTAAGGCCCACTCCATCTTACCTGAA
CCAGTTGGTAAGGGTAACCATGACATAGAGTGAGGCAAGGAAGAAGACGAAGTGGAAGGCAGAA
TAGTTGTAGGAAAGATGCTGGACTTGGACTGGAGGAGCTGGAGGGGTTTCTTGGTCAGCTGGCC
TCGCAGCCCCACCCCTTTGCCCTGGAGAGAGGAAATGGCTGCTGGGAGCAGAGCTGCTGAAACA
CCTCTTCCCCTCTCCCCCAACTACCTTTGTTAAGGCTCTTGAGGGTTCTTATGGCACTCCACAG
AGATCTACCACTTCTTATGGTTCCTCACTTGGCACTCACCTTTGTCTGCCTCCACTGTTTCAGG
GCAGCAGAAACACAGTGAGGGCTTCTGCAAAACAGAACGCAGGTTTTGGAATGGTCTTAAAAGA
TGTGAGGGTGTTAATCTAGGAAACTTCCCCCGTGAAAAGATTGGTCTAGTATTAAAAAGTGGAG
GCACACCTGGGTTCAAATTCTAGCTCCAGCATATAAGTGGCTGTGCAGACTTTGGTAAGATGTT
TAATCTTTTGTGCCTCGATTTCTCCATTTGTAAAATGGAGCAAATACCTACCTCACAGGGTTGT
TGTGAGGGTTAAATTAAATGAGATTATGTAAAAGTATCTAGCACAGTTGCCTAGCACATTGTGG
GTACTCAATAAAAGGTAACAGCAGCTATAATCTGAGCATTCTGGGTA

hide sequence

RefSeq Acc Id:

NM_001199875 ⟹ NP_001186804

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	43,791,976 - 43,796,089 (+)	NCBI
GRCh37	15	44,069,294 - 44,088,287 (+)	ENTREZGENE
HuRef	15	20,892,156 - 20,911,149 (+)	ENTREZGENE
CHM1_1	15	44,202,427 - 44,206,540 (+)	NCBI
T2T-CHM13v2.0	15	41,599,339 - 41,603,452 (+)	NCBI

Sequence:

show sequence

GGCGACTTTGTCAGTACCCCAAACTGTCCCCGCATGAGGTCACTCTGCACGGTCACGTGCTCGA
GCCCGCGGGAGCGCCACATCGCCAGCCGCACCCCTCCACCCCCAACCTGCCCACGTGACCCGGC
CTAGTTTCTCCAGGCCCGTCCCTACGTCTCACTCGGGAAGCCCCGCCCCACGCTGAGCGCTCCG
CCTGCGACCCTCCGCCACTTACCCACCCCGGCTCAAGCACGACCCGTGGATCCACGTGCTTTTT
CTTGTCCAATGGGAGCCGGCTCCCGGGCGCGAAGGGGCGGGGAGGAAAGGAACGACTGTGCTAC
GTTGCCAGAAGGGGCGGGACCTGCAACGTCCGACAGAACGAGGGGACGTAACGGAGGCAGGTTG
GAGCCGCTGCCGTCGCCATGACCCGCGGTAACCAGCGTGAGCTCGCCCGCCAGAAGAATATGAA
AAAGCAGAGCGACTCGGTTAAGGGAAAGCGCCGAGATGACGGGCTTTCTGCTGCCGCCCGCAAG
CAGAGGGTGGGAGTACAGCAGCCAAACGCTGAACTTAGTCCCATCCACTTCCATCTTATCCTTT
GTGCCCTTCATCCCCCTGCATCTTGTCCTTTTTGCCCTCTGGTACCTCCCAGTGCCCCATCATC
TCTACCCCCAGGGACTCGGAGATCATGCAGCAGAAGCAGAAAAAGGCAAACGAGAAGAAGGAGG
AACCCAAGTAGCTTTGTGGCTTCGTGTCCAACCCTCTTGCCCTTCGCCTGTGTGCCTGGAGCCA
GTCCCACCACGCTCGCGTTTCCTCCTGTAGTGCTCACAGGTCCCAGCACCGATGGCATTCCCTT
TGCCCTGAGTCTGCAGCGGGTCCCTTTTGTGCTTCCTTCCCCTCAGGTAGCCTCTCTCCCCCTG
GGCCACTCCCGGGGGTGAGGGGGTTACCCCTTCCCAGTGTTTTTTATTCCTGTGGGGCTCACCC
CAAAGTATTAAAAGTAGCTTTGTAATTCCTTGAGCGCCTGGTTTGACTGGGGACTTGGGGGGAT
GGGGTTGGAAGAATGACTGCCCTTTCCCACCAAAAAAGGGAGAACTCTTTAGATTCAGATTGTG
GGTATGTAGACTTAATAAGTGAAACATCACAGAAGAAGCCTTTATTATACAATGACAACCAAAC
AAGTACTCCGGATATGCAGTAGAGGAATCCTCTAAGAACCATAGAGACTTCTTTTCTGTGATTT
TTGTTCCCCACCCTTGAACACCATCTCTAGGATGGAGTTGGCCTAAGAGTGAATGCTGCAAGAT
CTGTGTTTATGCCTCTTTTCCTCATTCTTCCTCAGTTTGTTCGTCTGCTTGAAAGTTGGCCAAA
AAATCCTGCTGCTCACCGACTTCCCGTGGTCAGCTGCTGTCAAGCGTTCACTTTCTCTTCTGTC
ATTCCTCATGGAATGAGGGTGGTTTTGTCTTCCCGCTTCCCTTGACCTCAAAATCAGGATTAAA
ACCTGGGGTAGCCTCTGTGCTCCTTTCTTCTATGCCCTGGTTTGTTCTGTGGTTCTGGGCTTCT
TATATCCGTGTGCCCAGGGCTGAACTCCTTATTTTCCTTTCTCCAAGGGCAGAGCCGAGTCTTC
AGTCCCTGTTGGTCTTTCCCCACCCCCACTTCCAGCCCAAGAGCCAGGAAAGGGCTGGTGCCAC
ACTGTCTGCTGGGATCAGCGGTGGTTCTTTGAGCTGCTGATTTGGGTGTTAGGCTCTTGAGCTG
GGATGCAGATGTAACAGTAGCTCCAGTGAGTCAGACACTCTGCCCAGCACATTAGACTGTGTTT
GACCACTTCTTCCAGTTCATAGTATTGACTTCAGCCCAAACGGAGATAACTCCCTGTGTGTCCT
TGAGGTATTGAGCTGGGCTGGACAGCTCCCCTTGAGCCAACTCTAGGAGTACAATGTCAGGGGA
ACCCCAGTTTGTGAAAAGGACTTAGACTGGAGGATATTTGTTATCTGGGGATATGATGCGGTGG
CGGCGGCGCCTCAAGATAAGGGGCTGGGGTTTCTGGGTGGGGGGCCAACAGAGTGGTGCCAGTA
ACAGCCCCAGATAGAGGAGTACGCAGGCCCAGCATGAGGCAACCTTGACCCAGAAGGTGGCCCA
GCTACCCTTGATGAAGGTCTTTTCCAGTTCTGCTCCCTCATAGCTGTGTAACCAAAGGCTCTGG
TTAGAGAATATGAAGGGCCTTAGCTTTTAGACCTGTTCTACCTCCTCACCAAATATAATGGCAG
ACCCATGTGTGTCTGGAATGGCCTTGAATTGCTCTTTCCTTAAAATAGCTAGCTCTTCAGGAGA
GTATCTAAGGCCCACTCCATCTTACCTGAACCAGTTGGTAAGGGTAACCATGACATAGAGTGAG
GCAAGGAAGAAGACGAAGTGGAAGGCAGAATAGTTGTAGGAAAGATGCTGGACTTGGACTGGAG
GAGCTGGAGGGGTTTCTTGGTCAGCTGGCCTCGCAGCCCCACCCCTTTGCCCTGGAGAGAGGAA
ATGGCTGCTGGGAGCAGAGCTGCTGAAACACCTCTTCCCCTCTCCCCCAACTACCTTTGTTAAG
GCTCTTGAGGGTTCTTATGGCACTCCACAGAGATCTACCACTTCTTATGGTTCCTCACTTGGCA
CTCACCTTTGTCTGCCTCCACTGTTTCAGGGCAGCAGAAACACAGTGAGGGCTTCTGCAAAACA
GAACGCAGGTTTTGGAATGGTCTTAAAAGATGTGAGGGTGTTAATCTAGGAAACTTCCCCCGTG
AAAAGATTGGTCTAGTATTAAAAAGTGGAGGCACACCTGGGTTCAAATTCTAGCTCCAGCATAT
AAGTGGCTGTGCAGACTTTGGTAAGATGTTTAATCTTTTGTGCCTCGATTTCTCCATTTGTAAA
ATGGAGCAAATACCTACCTCACAGGGTTGTTGTGAGGGTTAAATTAAATGAGATTATGTAAAAG
TATCTAGCACAGTTGCCTAGCACATTGTGGGTACTCAATAAAAGGTAACAGCAGCTATAATCTG
AGCATTCTGGGTAGAGGTTGGTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001199876 ⟹ NP_001186805

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	43,791,976 - 43,796,089 (+)	NCBI
GRCh37	15	44,069,294 - 44,088,287 (+)	ENTREZGENE
HuRef	15	20,892,156 - 20,911,149 (+)	ENTREZGENE
CHM1_1	15	44,202,427 - 44,206,540 (+)	NCBI
T2T-CHM13v2.0	15	41,599,339 - 41,603,452 (+)	NCBI

Sequence:

show sequence

GGCGACTTTGTCAGTACCCCAAACTGTCCCCGCATGAGGTCACTCTGCACGGTCACGTGCTCGA
GCCCGCGGGAGCGCCACATCGCCAGCCGCACCCCTCCACCCCCAACCTGCCCACGTGACCCGGC
CTAGTTTCTCCAGGCCCGTCCCTACGTCTCACTCGGGAAGCCCCGCCCCACGCTGAGCGCTCCG
CCTGCGACCCTCCGCCACTTACCCACCCCGGCTCAAGCACGACCCGTGGATCCACGTGCTTTTT
CTTGTCCAATGGGAGCCGGCTCCCGGGCGCGAAGGGGCGGGGAGGAAAGGAACGACTGTGCTAC
GTTGCCAGAAGGGGCGGGACCTGCAACGTCCGACAGAACGAGGGGACGTAACGGAGGCAGGTTG
GAGCCGCTGCCGTCGCCATGACCCGCGGTAACCAGCGTGAGCTCGCCCGCCAGAAGAATATGAA
AAAGCAGAGCGACTCGGTTAAGGGAAAGCGCCGAGATGACGGGCTTTCTGCTGCCGCCCGCAAG
CAGAGTGCCCCATCATCTCTACCCCCAGGGACTCGGAGATCATGCAGCAGAAGCAGAAAAAGGC
AAACGAGAAGAAGGAGGAACCCAAGTAGCTTTGTGGCTTCGTGTCCAACCCTCTTGCCCTTCGC
CTGTGTGCCTGGAGCCAGTCCCACCACGCTCGCGTTTCCTCCTGTAGTGCTCACAGGTCCCAGC
ACCGATGGCATTCCCTTTGCCCTGAGTCTGCAGCGGGTCCCTTTTGTGCTTCCTTCCCCTCAGG
TAGCCTCTCTCCCCCTGGGCCACTCCCGGGGGTGAGGGGGTTACCCCTTCCCAGTGTTTTTTAT
TCCTGTGGGGCTCACCCCAAAGTATTAAAAGTAGCTTTGTAATTCCTTGAGCGCCTGGTTTGAC
TGGGGACTTGGGGGGATGGGGTTGGAAGAATGACTGCCCTTTCCCACCAAAAAAGGGAGAACTC
TTTAGATTCAGATTGTGGGTATGTAGACTTAATAAGTGAAACATCACAGAAGAAGCCTTTATTA
TACAATGACAACCAAACAAGTACTCCGGATATGCAGTAGAGGAATCCTCTAAGAACCATAGAGA
CTTCTTTTCTGTGATTTTTGTTCCCCACCCTTGAACACCATCTCTAGGATGGAGTTGGCCTAAG
AGTGAATGCTGCAAGATCTGTGTTTATGCCTCTTTTCCTCATTCTTCCTCAGTTTGTTCGTCTG
CTTGAAAGTTGGCCAAAAAATCCTGCTGCTCACCGACTTCCCGTGGTCAGCTGCTGTCAAGCGT
TCACTTTCTCTTCTGTCATTCCTCATGGAATGAGGGTGGTTTTGTCTTCCCGCTTCCCTTGACC
TCAAAATCAGGATTAAAACCTGGGGTAGCCTCTGTGCTCCTTTCTTCTATGCCCTGGTTTGTTC
TGTGGTTCTGGGCTTCTTATATCCGTGTGCCCAGGGCTGAACTCCTTATTTTCCTTTCTCCAAG
GGCAGAGCCGAGTCTTCAGTCCCTGTTGGTCTTTCCCCACCCCCACTTCCAGCCCAAGAGCCAG
GAAAGGGCTGGTGCCACACTGTCTGCTGGGATCAGCGGTGGTTCTTTGAGCTGCTGATTTGGGT
GTTAGGCTCTTGAGCTGGGATGCAGATGTAACAGTAGCTCCAGTGAGTCAGACACTCTGCCCAG
CACATTAGACTGTGTTTGACCACTTCTTCCAGTTCATAGTATTGACTTCAGCCCAAACGGAGAT
AACTCCCTGTGTGTCCTTGAGGTATTGAGCTGGGCTGGACAGCTCCCCTTGAGCCAACTCTAGG
AGTACAATGTCAGGGGAACCCCAGTTTGTGAAAAGGACTTAGACTGGAGGATATTTGTTATCTG
GGGATATGATGCGGTGGCGGCGGCGCCTCAAGATAAGGGGCTGGGGTTTCTGGGTGGGGGGCCA
ACAGAGTGGTGCCAGTAACAGCCCCAGATAGAGGAGTACGCAGGCCCAGCATGAGGCAACCTTG
ACCCAGAAGGTGGCCCAGCTACCCTTGATGAAGGTCTTTTCCAGTTCTGCTCCCTCATAGCTGT
GTAACCAAAGGCTCTGGTTAGAGAATATGAAGGGCCTTAGCTTTTAGACCTGTTCTACCTCCTC
ACCAAATATAATGGCAGACCCATGTGTGTCTGGAATGGCCTTGAATTGCTCTTTCCTTAAAATA
GCTAGCTCTTCAGGAGAGTATCTAAGGCCCACTCCATCTTACCTGAACCAGTTGGTAAGGGTAA
CCATGACATAGAGTGAGGCAAGGAAGAAGACGAAGTGGAAGGCAGAATAGTTGTAGGAAAGATG
CTGGACTTGGACTGGAGGAGCTGGAGGGGTTTCTTGGTCAGCTGGCCTCGCAGCCCCACCCCTT
TGCCCTGGAGAGAGGAAATGGCTGCTGGGAGCAGAGCTGCTGAAACACCTCTTCCCCTCTCCCC
CAACTACCTTTGTTAAGGCTCTTGAGGGTTCTTATGGCACTCCACAGAGATCTACCACTTCTTA
TGGTTCCTCACTTGGCACTCACCTTTGTCTGCCTCCACTGTTTCAGGGCAGCAGAAACACAGTG
AGGGCTTCTGCAAAACAGAACGCAGGTTTTGGAATGGTCTTAAAAGATGTGAGGGTGTTAATCT
AGGAAACTTCCCCCGTGAAAAGATTGGTCTAGTATTAAAAAGTGGAGGCACACCTGGGTTCAAA
TTCTAGCTCCAGCATATAAGTGGCTGTGCAGACTTTGGTAAGATGTTTAATCTTTTGTGCCTCG
ATTTCTCCATTTGTAAAATGGAGCAAATACCTACCTCACAGGGTTGTTGTGAGGGTTAAATTAA
ATGAGATTATGTAAAAGTATCTAGCACAGTTGCCTAGCACATTGTGGGTACTCAATAAAAGGTA
ACAGCAGCTATAATCTGAGCATTCTGGGTAGAGGTTGGTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001199877 ⟹ NP_001186806

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	43,777,086 - 43,796,079 (+)	NCBI
GRCh37	15	44,069,294 - 44,088,287 (+)	ENTREZGENE
HuRef	15	20,892,156 - 20,911,149 (+)	ENTREZGENE
CHM1_1	15	44,187,550 - 44,206,540 (+)	NCBI
T2T-CHM13v2.0	15	41,584,446 - 41,603,442 (+)	NCBI

Sequence:

show sequence

GCTTCGCTCTCCCCGGCCAACCGCCCGGACCTCGGCGCTTTCTTCTAGGATCCGCATGAATCGC
TTTGGGCTATCGGAAGAGCTATCCCCAGTTCTCGGGAGAAAGAGTCCGCGACCAGCGTCTGACC
TCTCACTCAGAGTCCCCAGTCCTGCCTTAGTTTCCCCAGCGACCCTGAATTTGGAGTTGCTGTC
TCTAAGTGAAAGCTGAACCTGCAACCCCTTGAGGGTTTCAGCCGCAGAGGGGCGGGAGAAAGGG
CCTGGTTGGTAGGCGGGCTCAGCGGTTCGCGCCCAGTTAGCCCCGAGCTTCGGAGACCCGAGAG
ACCAGAGGATGGCTGACACGAAGGGGCACCCGAGACAGCGCCTGGGCTTTTTCCCGCCCGCGGT
TCCACCGCTCTGAAACCGATTTCTAACAGAGAGAGACATAGTCTTGCTCTGTTACCCATGCTGG
AGTACGGTGGCGAGATCACGACTCACTACAACTTTGAATTCCTGGATTCAAGCAATCCTCCCAT
CTCAGCCTCCTGAGTAGCTAAGGACTACAGGGCGACTTTGTCAGTACCCCAAACTGTCCCCGCA
TGAGGTCACTCTGCACGGTCACGTGCTCGAGCCCGCGGGAGCGCCACATCGCCAGCCGCACCCC
TCCACCCCCAACCTGCCCACGTGACCCGGCCTAGTTTCTCCAGGCCCGTCCCTACGTCTCACTC
GGGAAGCCCCGCCCCACGCTGAGCGCTCCGCCTGCGACCCTCCGCCACTTACCCACCCCGGCTC
AAGCACGACCCGTGGATCCACGTGCTTTTTCTTGTCCAATGGGAGCCGGCTCCCGGGCGCGAAG
GGGCGGGGAGGAAAGGAACGACTGTGCTACGTTGCCAGAAGGGGCGGGACCTGCAACGTCCGAC
AGAACGAGGGGACGTAACGGAGGCAGGTTGGAGCCGCTGCCGTCGCCATGACCCGCGGTAACCA
GCGTGAGCTCGCCCGCCAGAAGAATATGAAAAAGCAGAGCGACTCGGTTAAGGGAAAGCGCCGA
GATGACGGGCTTTCTGCTGCCGCCCGCAAGCAGAGGGACTCGGAGATCATGCAGCAGAAGCAGA
AAAAGGCAAACGAGAAGAAGGAGGAACCCAAGTAGCTTTGTGGCTTCGTGTCCAACCCTCTTGC
CCTTCGCCTGTGTGCCTGGAGCCAGTCCCACCACGCTCGCGTTTCCTCCTGTAGTGCTCACAGG
TCCCAGCACCGATGGCATTCCCTTTGCCCTGAGTCTGCAGCGGGTCCCTTTTGTGCTTCCTTCC
CCTCAGGTAGCCTCTCTCCCCCTGGGCCACTCCCGGGGGTGAGGGGGTTACCCCTTCCCAGTGT
TTTTTATTCCTGTGGGGCTCACCCCAAAGTATTAAAAGTAGCTTTGTAATTCCTTGAGCGCCTG
GTTTGACTGGGGACTTGGGGGGATGGGGTTGGAAGAATGACTGCCCTTTCCCACCAAAAAAGGG
AGAACTCTTTAGATTCAGATTGTGGGTATGTAGACTTAATAAGTGAAACATCACAGAAGAAGCC
TTTATTATACAATGACAACCAAACAAGTACTCCGGATATGCAGTAGAGGAATCCTCTAAGAACC
ATAGAGACTTCTTTTCTGTGATTTTTGTTCCCCACCCTTGAACACCATCTCTAGGATGGAGTTG
GCCTAAGAGTGAATGCTGCAAGATCTGTGTTTATGCCTCTTTTCCTCATTCTTCCTCAGTTTGT
TCGTCTGCTTGAAAGTTGGCCAAAAAATCCTGCTGCTCACCGACTTCCCGTGGTCAGCTGCTGT
CAAGCGTTCACTTTCTCTTCTGTCATTCCTCATGGAATGAGGGTGGTTTTGTCTTCCCGCTTCC
CTTGACCTCAAAATCAGGATTAAAACCTGGGGTAGCCTCTGTGCTCCTTTCTTCTATGCCCTGG
TTTGTTCTGTGGTTCTGGGCTTCTTATATCCGTGTGCCCAGGGCTGAACTCCTTATTTTCCTTT
CTCCAAGGGCAGAGCCGAGTCTTCAGTCCCTGTTGGTCTTTCCCCACCCCCACTTCCAGCCCAA
GAGCCAGGAAAGGGCTGGTGCCACACTGTCTGCTGGGATCAGCGGTGGTTCTTTGAGCTGCTGA
TTTGGGTGTTAGGCTCTTGAGCTGGGATGCAGATGTAACAGTAGCTCCAGTGAGTCAGACACTC
TGCCCAGCACATTAGACTGTGTTTGACCACTTCTTCCAGTTCATAGTATTGACTTCAGCCCAAA
CGGAGATAACTCCCTGTGTGTCCTTGAGGTATTGAGCTGGGCTGGACAGCTCCCCTTGAGCCAA
CTCTAGGAGTACAATGTCAGGGGAACCCCAGTTTGTGAAAAGGACTTAGACTGGAGGATATTTG
TTATCTGGGGATATGATGCGGTGGCGGCGGCGCCTCAAGATAAGGGGCTGGGGTTTCTGGGTGG
GGGGCCAACAGAGTGGTGCCAGTAACAGCCCCAGATAGAGGAGTACGCAGGCCCAGCATGAGGC
AACCTTGACCCAGAAGGTGGCCCAGCTACCCTTGATGAAGGTCTTTTCCAGTTCTGCTCCCTCA
TAGCTGTGTAACCAAAGGCTCTGGTTAGAGAATATGAAGGGCCTTAGCTTTTAGACCTGTTCTA
CCTCCTCACCAAATATAATGGCAGACCCATGTGTGTCTGGAATGGCCTTGAATTGCTCTTTCCT
TAAAATAGCTAGCTCTTCAGGAGAGTATCTAAGGCCCACTCCATCTTACCTGAACCAGTTGGTA
AGGGTAACCATGACATAGAGTGAGGCAAGGAAGAAGACGAAGTGGAAGGCAGAATAGTTGTAGG
AAAGATGCTGGACTTGGACTGGAGGAGCTGGAGGGGTTTCTTGGTCAGCTGGCCTCGCAGCCCC
ACCCCTTTGCCCTGGAGAGAGGAAATGGCTGCTGGGAGCAGAGCTGCTGAAACACCTCTTCCCC
TCTCCCCCAACTACCTTTGTTAAGGCTCTTGAGGGTTCTTATGGCACTCCACAGAGATCTACCA
CTTCTTATGGTTCCTCACTTGGCACTCACCTTTGTCTGCCTCCACTGTTTCAGGGCAGCAGAAA
CACAGTGAGGGCTTCTGCAAAACAGAACGCAGGTTTTGGAATGGTCTTAAAAGATGTGAGGGTG
TTAATCTAGGAAACTTCCCCCGTGAAAAGATTGGTCTAGTATTAAAAAGTGGAGGCACACCTGG
GTTCAAATTCTAGCTCCAGCATATAAGTGGCTGTGCAGACTTTGGTAAGATGTTTAATCTTTTG
TGCCTCGATTTCTCCATTTGTAAAATGGAGCAAATACCTACCTCACAGGGTTGTTGTGAGGGTT
AAATTAAATGAGATTATGTAAAAGTATCTAGCACAGTTGCCTAGCACATTGTGGGTACTCAATA
AAAGGTAACAGCAGCTATAATCTGAGCATTCTGGGTA

hide sequence

RefSeq Acc Id:

NM_001199878 ⟹ NP_001186807

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	43,792,320 - 43,796,079 (+)	NCBI
GRCh37	15	44,069,294 - 44,088,287 (+)	ENTREZGENE
HuRef	15	20,892,156 - 20,911,149 (+)	ENTREZGENE
CHM1_1	15	44,202,828 - 44,206,540 (+)	NCBI
T2T-CHM13v2.0	15	41,599,683 - 41,603,442 (+)	NCBI

Sequence:

show sequence

AACGTCCGACAGAACGAGGGGACGTAACGGAGGCAGGTTGGAGCCGCTGCCGTCGCCATGACCC
GTGAGCACCGAGCCCCCTTCTCCTTGCCCTTTTCTTTCCGTTCACCCTAAACACCACCGGCGAG
GCGCCGGCTTTGACCTTCCGTAGCTTCCCTAGCAAGGCGTTTCTCTGGGCGCGCTCTGTGGCCA
CCCTCACACTCGGTGCCCGGAAATCGAGCCCTTTGCCCACGGCTACTTCACGGGACCACCCTCC
CGGGTTAGGCATAGGCCCTCCCGGATCTTCCGCGGTGCGGTAACCAGCGTGAGCTCGCCCGCCA
GAAGAATATGAAAAAGCAGAGCGACTCGGTTAAGGGAAAGCGCCGAGATGACGGGCTTTCTGCT
GCCGCCCGCAAGCAGAGGGACTCGGAGATCATGCAGCAGAAGCAGAAAAAGGCAAACGAGAAGA
AGGAGGAACCCAAGTAGCTTTGTGGCTTCGTGTCCAACCCTCTTGCCCTTCGCCTGTGTGCCTG
GAGCCAGTCCCACCACGCTCGCGTTTCCTCCTGTAGTGCTCACAGGTCCCAGCACCGATGGCAT
TCCCTTTGCCCTGAGTCTGCAGCGGGTCCCTTTTGTGCTTCCTTCCCCTCAGGTAGCCTCTCTC
CCCCTGGGCCACTCCCGGGGGTGAGGGGGTTACCCCTTCCCAGTGTTTTTTATTCCTGTGGGGC
TCACCCCAAAGTATTAAAAGTAGCTTTGTAATTCCTTGAGCGCCTGGTTTGACTGGGGACTTGG
GGGGATGGGGTTGGAAGAATGACTGCCCTTTCCCACCAAAAAAGGGAGAACTCTTTAGATTCAG
ATTGTGGGTATGTAGACTTAATAAGTGAAACATCACAGAAGAAGCCTTTATTATACAATGACAA
CCAAACAAGTACTCCGGATATGCAGTAGAGGAATCCTCTAAGAACCATAGAGACTTCTTTTCTG
TGATTTTTGTTCCCCACCCTTGAACACCATCTCTAGGATGGAGTTGGCCTAAGAGTGAATGCTG
CAAGATCTGTGTTTATGCCTCTTTTCCTCATTCTTCCTCAGTTTGTTCGTCTGCTTGAAAGTTG
GCCAAAAAATCCTGCTGCTCACCGACTTCCCGTGGTCAGCTGCTGTCAAGCGTTCACTTTCTCT
TCTGTCATTCCTCATGGAATGAGGGTGGTTTTGTCTTCCCGCTTCCCTTGACCTCAAAATCAGG
ATTAAAACCTGGGGTAGCCTCTGTGCTCCTTTCTTCTATGCCCTGGTTTGTTCTGTGGTTCTGG
GCTTCTTATATCCGTGTGCCCAGGGCTGAACTCCTTATTTTCCTTTCTCCAAGGGCAGAGCCGA
GTCTTCAGTCCCTGTTGGTCTTTCCCCACCCCCACTTCCAGCCCAAGAGCCAGGAAAGGGCTGG
TGCCACACTGTCTGCTGGGATCAGCGGTGGTTCTTTGAGCTGCTGATTTGGGTGTTAGGCTCTT
GAGCTGGGATGCAGATGTAACAGTAGCTCCAGTGAGTCAGACACTCTGCCCAGCACATTAGACT
GTGTTTGACCACTTCTTCCAGTTCATAGTATTGACTTCAGCCCAAACGGAGATAACTCCCTGTG
TGTCCTTGAGGTATTGAGCTGGGCTGGACAGCTCCCCTTGAGCCAACTCTAGGAGTACAATGTC
AGGGGAACCCCAGTTTGTGAAAAGGACTTAGACTGGAGGATATTTGTTATCTGGGGATATGATG
CGGTGGCGGCGGCGCCTCAAGATAAGGGGCTGGGGTTTCTGGGTGGGGGGCCAACAGAGTGGTG
CCAGTAACAGCCCCAGATAGAGGAGTACGCAGGCCCAGCATGAGGCAACCTTGACCCAGAAGGT
GGCCCAGCTACCCTTGATGAAGGTCTTTTCCAGTTCTGCTCCCTCATAGCTGTGTAACCAAAGG
CTCTGGTTAGAGAATATGAAGGGCCTTAGCTTTTAGACCTGTTCTACCTCCTCACCAAATATAA
TGGCAGACCCATGTGTGTCTGGAATGGCCTTGAATTGCTCTTTCCTTAAAATAGCTAGCTCTTC
AGGAGAGTATCTAAGGCCCACTCCATCTTACCTGAACCAGTTGGTAAGGGTAACCATGACATAG
AGTGAGGCAAGGAAGAAGACGAAGTGGAAGGCAGAATAGTTGTAGGAAAGATGCTGGACTTGGA
CTGGAGGAGCTGGAGGGGTTTCTTGGTCAGCTGGCCTCGCAGCCCCACCCCTTTGCCCTGGAGA
GAGGAAATGGCTGCTGGGAGCAGAGCTGCTGAAACACCTCTTCCCCTCTCCCCCAACTACCTTT
GTTAAGGCTCTTGAGGGTTCTTATGGCACTCCACAGAGATCTACCACTTCTTATGGTTCCTCAC
TTGGCACTCACCTTTGTCTGCCTCCACTGTTTCAGGGCAGCAGAAACACAGTGAGGGCTTCTGC
AAAACAGAACGCAGGTTTTGGAATGGTCTTAAAAGATGTGAGGGTGTTAATCTAGGAAACTTCC
CCCGTGAAAAGATTGGTCTAGTATTAAAAAGTGGAGGCACACCTGGGTTCAAATTCTAGCTCCA
GCATATAAGTGGCTGTGCAGACTTTGGTAAGATGTTTAATCTTTTGTGCCTCGATTTCTCCATT
TGTAAAATGGAGCAAATACCTACCTCACAGGGTTGTTGTGAGGGTTAAATTAAATGAGATTATG
TAAAAGTATCTAGCACAGTTGCCTAGCACATTGTGGGTACTCAATAAAAGGTAACAGCAGCTAT
AATCTGAGCATTCTGGGTA

hide sequence

RefSeq Acc Id:

NR_037672

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	43,791,976 - 43,796,089 (+)	NCBI
GRCh37	15	44,069,294 - 44,088,287 (+)	ENTREZGENE
HuRef	15	20,892,156 - 20,911,149 (+)	ENTREZGENE
CHM1_1	15	44,202,427 - 44,206,540 (+)	NCBI
T2T-CHM13v2.0	15	41,599,339 - 41,603,452 (+)	NCBI

Sequence:

show sequence

GGCGACTTTGTCAGTACCCCAAACTGTCCCCGCATGAGGTCACTCTGCACGGTCACGTGCTCGA
GCCCGCGGGAGCGCCACATCGCCAGCCGCACCCCTCCACCCCCAACCTGCCCACGTGACCCGGC
CTAGTTTCTCCAGGCCCGTCCCTACGTCTCACTCGGGAAGCCCCGCCCCACGCTGAGCGCTCCG
CCTGCGACCCTCCGCCACTTACCCACCCCGGCTCAAGCACGACCCGTGGATCCACGTGCTTTTT
CTTGTCCAATGGGAGCCGGCTCCCGGGCGCGAAGGGGCGGGGAGGAAAGGAACGACTGTGCTAC
GTTGCCAGAAGGGGCGGGACCTGCAACGTCCGACAGAACGAGGGGACGTAACGGAGGCAGGTTG
GAGCCGCTGCCGTCGCCATGACCCGCGGTAACCAGCGTGAGCTCGCCCGCCAGAAGAATATGAA
AAAGCAGAGCGACTCGGTTAAGGGAAAGCGCCGAGATGACGGGCTTTCTGCTGCCGCCCGCAAG
CAGAGGGACTCGGAGATCATGCAGCAGAAGCAGAAAAAGGCAAACGAGAAGAAGGAGGAACCCA
AGTAGCTTTGTGGCTTCGTGTCCAACCCTCTTGCCCTTCGCCTGTGTGCCTGGAGCCAGTCCCA
CCACGCTCGCGTTTCCTCCTGTAGTGCTCACAGGTCCCAGCACCGATGGCATTCCCTTTGCCCT
GAGTCTGCAGCGGGTCCCTTTTGTGCTTCCTTCCCCTCAGTTTGTTCGTCTGCTTGAAAGTTGG
CCAAAAAATCCTGCTGCTCACCGACTTCCCGTGGTCAGCTGCTGTCAAGCGTTCACTTTCTCTT
CTGTCATTCCTCATGGAATGAGGGTGGTTTTGTCTTCCCGCTTCCCTTGACCTCAAAATCAGGA
TTAAAACCTGGGGTAGCCTCTGTGCTCCTTTCTTCTATGCCCTGGTTTGTTCTGTGGTTCTGGG
CTTCTTATATCCGTGTGCCCAGGGCTGAACTCCTTATTTTCCTTTCTCCAAGGGCAGAGCCGAG
TCTTCAGTCCCTGTTGGTCTTTCCCCACCCCCACTTCCAGCCCAAGAGCCAGGAAAGGGCTGGT
GCCACACTGTCTGCTGGGATCAGCGGTGGTTCTTTGAGCTGCTGATTTGGGTGTTAGGCTCTTG
AGCTGGGATGCAGATGTAACAGTAGCTCCAGTGAGTCAGACACTCTGCCCAGCACATTAGACTG
TGTTTGACCACTTCTTCCAGTTCATAGTATTGACTTCAGCCCAAACGGAGATAACTCCCTGTGT
GTCCTTGAGGTATTGAGCTGGGCTGGACAGCTCCCCTTGAGCCAACTCTAGGAGTACAATGTCA
GGGGAACCCCAGTTTGTGAAAAGGACTTAGACTGGAGGATATTTGTTATCTGGGGATATGATGC
GGTGGCGGCGGCGCCTCAAGATAAGGGGCTGGGGTTTCTGGGTGGGGGGCCAACAGAGTGGTGC
CAGTAACAGCCCCAGATAGAGGAGTACGCAGGCCCAGCATGAGGCAACCTTGACCCAGAAGGTG
GCCCAGCTACCCTTGATGAAGGTCTTTTCCAGTTCTGCTCCCTCATAGCTGTGTAACCAAAGGC
TCTGGTTAGAGAATATGAAGGGCCTTAGCTTTTAGACCTGTTCTACCTCCTCACCAAATATAAT
GGCAGACCCATGTGTGTCTGGAATGGCCTTGAATTGCTCTTTCCTTAAAATAGCTAGCTCTTCA
GGAGAGTATCTAAGGCCCACTCCATCTTACCTGAACCAGTTGGTAAGGGTAACCATGACATAGA
GTGAGGCAAGGAAGAAGACGAAGTGGAAGGCAGAATAGTTGTAGGAAAGATGCTGGACTTGGAC
TGGAGGAGCTGGAGGGGTTTCTTGGTCAGCTGGCCTCGCAGCCCCACCCCTTTGCCCTGGAGAG
AGGAAATGGCTGCTGGGAGCAGAGCTGCTGAAACACCTCTTCCCCTCTCCCCCAACTACCTTTG
TTAAGGCTCTTGAGGGTTCTTATGGCACTCCACAGAGATCTACCACTTCTTATGGTTCCTCACT
TGGCACTCACCTTTGTCTGCCTCCACTGTTTCAGGGCAGCAGAAACACAGTGAGGGCTTCTGCA
AAACAGAACGCAGGTTTTGGAATGGTCTTAAAAGATGTGAGGGTGTTAATCTAGGAAACTTCCC
CCGTGAAAAGATTGGTCTAGTATTAAAAAGTGGAGGCACACCTGGGTTCAAATTCTAGCTCCAG
CATATAAGTGGCTGTGCAGACTTTGGTAAGATGTTTAATCTTTTGTGCCTCGATTTCTCCATTT
GTAAAATGGAGCAAATACCTACCTCACAGGGTTGTTGTGAGGGTTAAATTAAATGAGATTATGT
AAAAGTATCTAGCACAGTTGCCTAGCACATTGTGGGTACTCAATAAAAGGTAACAGCAGCTATA
ATCTGAGCATTCTGGGTAGAGGTTGGTAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001018118	(Get FASTA)	NCBI Sequence Viewer
	NP_001186804	(Get FASTA)	NCBI Sequence Viewer
	NP_001186805	(Get FASTA)	NCBI Sequence Viewer
	NP_001186806	(Get FASTA)	NCBI Sequence Viewer
	NP_001186807	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC63516	(Get FASTA)	NCBI Sequence Viewer
	AAH15491	(Get FASTA)	NCBI Sequence Viewer
	AAH22326	(Get FASTA)	NCBI Sequence Viewer
	AAK07636	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000249786
	ENSP00000249786.4
	ENSP00000339647
	ENSP00000339647.5
	ENSP00000370764
	ENSP00000370764.1
	ENSP00000384300
	ENSP00000384300.1
	ENSP00000386044.1
	ENSP00000386290.1
	ENSP00000386316.1
	ENSP00000386783.1
	ENSP00000387041.1
	ENSP00000387187
	ENSP00000387187.2
	ENSP00000391027.1
	ENSP00000394660.1
	ENSP00000400178.1
	ENSP00000486542.1
GenBank Protein	P84101	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001018118 ⟸ NM_001018108
- Peptide Label:	isoform c
- UniProtKB:	O88891 (UniProtKB/Swiss-Prot), O75918 (UniProtKB/Swiss-Prot), B9A026 (UniProtKB/Swiss-Prot), B5MCG1 (UniProtKB/Swiss-Prot), A6NL45 (UniProtKB/Swiss-Prot), Q9BZH7 (UniProtKB/Swiss-Prot), P84101 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTRGNQRELARQKNMKKQSDSVKGKRRDDGLSAAARKQRDSEIMQQKQKKANEKKEEPK hide sequence

RefSeq Acc Id:	NP_001186806 ⟸ NM_001199877
- Peptide Label:	isoform c
- UniProtKB:	O88891 (UniProtKB/Swiss-Prot), O75918 (UniProtKB/Swiss-Prot), B9A026 (UniProtKB/Swiss-Prot), B5MCG1 (UniProtKB/Swiss-Prot), A6NL45 (UniProtKB/Swiss-Prot), Q9BZH7 (UniProtKB/Swiss-Prot), P84101 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTRGNQRELARQKNMKKQSDSVKGKRRDDGLSAAARKQRDSEIMQQKQKKANEKKEEPK hide sequence

RefSeq Acc Id:	NP_001186804 ⟸ NM_001199875
- Peptide Label:	isoform a
- UniProtKB:	P84101 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTRGNQRELARQKNMKKQSDSVKGKRRDDGLSAAARKQRVGVQQPNAELSPIHFHLILCALHPP ASCPFCPLVPPSAPSSLPPGTRRSCSRSRKRQTRRRRNPSSFVASCPTLLPFACVPGASPTTLA FPPVVLTGPSTDGIPFALSLQRVPFVLPSPQVASLPLGHSRG hide sequence

RefSeq Acc Id:	NP_001186805 ⟸ NM_001199876
- Peptide Label:	isoform b
- UniProtKB:	P84101 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTRGNQRELARQKNMKKQSDSVKGKRRDDGLSAAARKQSAPSSLPPGTRRSCSRSRKRQTRRRR NPSSFVASCPTLLPFACVPGASPTTLAFPPVVLTGPSTDGIPFALSLQRVPFVLPSPQVASLPL GHSRG hide sequence

RefSeq Acc Id:	NP_001186807 ⟸ NM_001199878
- Peptide Label:	isoform d
- UniProtKB:	P84101 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MKKQSDSVKGKRRDDGLSAAARKQRDSEIMQQKQKKANEKKEEPK hide sequence

RefSeq Acc Id:

ENSP00000501422 ⟸ ENST00000674451

RefSeq Acc Id:

ENSP00000386044 ⟸ ENST00000402131

RefSeq Acc Id:

ENSP00000384300 ⟸ ENST00000403425

RefSeq Acc Id:

ENSP00000339647 ⟸ ENST00000339624

RefSeq Acc Id:

ENSP00000394660 ⟸ ENST00000430901

RefSeq Acc Id:

ENSP00000400178 ⟸ ENST00000445816

RefSeq Acc Id:

ENSP00000249786 ⟸ ENST00000249786

RefSeq Acc Id:

ENSP00000486542 ⟸ ENST00000630046

RefSeq Acc Id:

ENSP00000387187 ⟸ ENST00000409960

RefSeq Acc Id:

ENSP00000386290 ⟸ ENST00000409617

RefSeq Acc Id:

ENSP00000386783 ⟸ ENST00000409614

RefSeq Acc Id:

ENSP00000386316 ⟸ ENST00000409646

RefSeq Acc Id:

ENSP00000391027 ⟸ ENST00000448830

RefSeq Acc Id:

ENSP00000387041 ⟸ ENST00000409291

RefSeq Acc Id:

ENSP00000370764 ⟸ ENST00000381359

Protein Domains

Small EDRK-rich factor-like N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P84101-F1-model_v2	AlphaFold	P84101	1-59	view protein structure

Promoters

RGD ID:

6792614

Promoter ID:

HG_KWN:21228

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4

Transcripts:

ENST00000339624, ENST00000402131, ENST00000403425, ENST00000409291, ENST00000409614, ENST00000409646, OTTHUMT00000133234, OTTHUMT00000133469, OTTHUMT00000133473, OTTHUMT00000133494, OTTHUMT00000315924, UC001ZTB.1, UC010BDQ.1, UC010BDR.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	15	41,871,641 - 41,872,572 (+)	MPROMDB

RGD ID:

6851352

Promoter ID:

EP73474

Type:

multiple initiation site

Name:

HS_SERF2

Description:

Small EDRK-rich factor 2.

SO ACC ID:

SO:0000170

Source:

EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

NEDO full length human cDNA sequencing project.; Oligo-capping

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	15	41,871,817 - 41,871,877	EPD

RGD ID:

7229309

Promoter ID:

EPDNEW_H20400

Type:

initiation region

Name:

SERF2_2

Description:

small EDRK-rich factor 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H20401

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	43,777,094 - 43,777,154	EPDNEW

RGD ID:

7229311

Promoter ID:

EPDNEW_H20401

Type:

initiation region

Name:

SERF2_1

Description:

small EDRK-rich factor 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H20400

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	43,792,330 - 43,792,390	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:10757	AgrOrtholog
COSMIC	SERF2	COSMIC
Ensembl Genes	ENSG00000140264	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENST00000249786	ENTREZGENE
	ENST00000249786.9	UniProtKB/Swiss-Prot
	ENST00000339624	ENTREZGENE
	ENST00000339624.9	UniProtKB/Swiss-Prot
	ENST00000381359	ENTREZGENE
	ENST00000381359.5	UniProtKB/Swiss-Prot
	ENST00000402131.5	UniProtKB/Swiss-Prot
	ENST00000403425	ENTREZGENE
	ENST00000403425.5	UniProtKB/Swiss-Prot
	ENST00000409291.5	UniProtKB/TrEMBL
	ENST00000409614.1	UniProtKB/Swiss-Prot
	ENST00000409617.6	UniProtKB/TrEMBL
	ENST00000409646.5	UniProtKB/TrEMBL
	ENST00000409960	ENTREZGENE
	ENST00000409960.6	UniProtKB/Swiss-Prot
	ENST00000430901.1	UniProtKB/TrEMBL
	ENST00000445816.5	UniProtKB/Swiss-Prot
	ENST00000448830.2	UniProtKB/TrEMBL
	ENST00000630046.2	UniProtKB/TrEMBL
GTEx	ENSG00000140264	GTEx
HGNC ID	HGNC:10757	ENTREZGENE
Human Proteome Map	SERF2	Human Proteome Map
InterPro	SERF1/2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Uncharacterised_SERF_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	hsa:10169	UniProtKB/Swiss-Prot
NCBI Gene	10169	ENTREZGENE
OMIM	605054	OMIM
PANTHER	PTHR13596	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RCG26176, ISOFORM CRA_A	UniProtKB/TrEMBL
	SMALL EDRK-RICH FACTOR 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	4F5	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB	PA35677	PharmGKB
UniProt	A6NL45	ENTREZGENE
	B5MCG1	ENTREZGENE
	B8ZZY7_HUMAN	UniProtKB/TrEMBL
	B9A026	ENTREZGENE
	B9A031_HUMAN	UniProtKB/TrEMBL
	C9JQZ0_HUMAN	UniProtKB/TrEMBL
	F8WBN3_HUMAN	UniProtKB/TrEMBL
	F8WBV6_HUMAN	UniProtKB/TrEMBL
	O75918	ENTREZGENE
	O88891	ENTREZGENE
	P84101	ENTREZGENE
	Q9BZH7	ENTREZGENE
	SERF2_HUMAN	UniProtKB/Swiss-Prot
UniProt Secondary	A6NL45	UniProtKB/Swiss-Prot
	B5MCG1	UniProtKB/Swiss-Prot
	B9A026	UniProtKB/Swiss-Prot
	O75918	UniProtKB/Swiss-Prot
	O88891	UniProtKB/Swiss-Prot
	Q9BZH7	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar