Spmip6 (sperm microtubule inner protein 6) - Rat Genome Database

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Gene: Spmip6 (sperm microtubule inner protein 6) Heterocephalus glaber
Analyze
Symbol: Spmip6 (Ensembl: C9orf24)
Name: sperm microtubule inner protein 6 (Ensembl:chromosome unknown C9orf24 homolog)
RGD ID: 18932948
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); INVOLVED IN flagellated sperm motility (ortholog); protein-containing complex assembly (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); distal arthrogryposis type 1A (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C9orf24 homolog; CUNH9orf24; spermatid-specific manchette-related protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473638,784,128 - 38,799,912 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473638,784,071 - 38,800,097 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Spmip6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473638,784,128 - 38,799,912 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473638,784,071 - 38,800,097 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SPMIP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38934,379,019 - 34,397,810 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl934,379,019 - 34,397,828 (-)EnsemblGRCh38hg38GRCh38
GRCh37934,379,017 - 34,397,808 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36934,369,017 - 34,387,849 (-)NCBINCBI36Build 36hg18NCBI36
Build 34934,369,016 - 34,371,598NCBI
Celera934,310,522 - 34,329,350 (-)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef934,334,107 - 34,352,947 (-)NCBIHuRef
CHM1_1934,378,781 - 34,397,638 (-)NCBICHM1_1
T2T-CHM13v2.0934,397,509 - 34,416,300 (-)NCBIT2T-CHM13v2.0
Spmip6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39441,505,005 - 41,517,333 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl441,505,009 - 41,517,333 (-)EnsemblGRCm39 Ensembl
GRCm38441,505,005 - 41,517,366 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl441,505,009 - 41,517,333 (-)EnsemblGRCm38mm10GRCm38
MGSCv37441,452,042 - 41,464,366 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36441,693,678 - 41,706,004 (-)NCBIMGSCv36mm8
Celera441,166,278 - 41,178,565 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map421.7NCBI
Spmip6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,462,070 - 61,474,832 (-)NCBIGRCr8
mRatBN7.2556,666,160 - 56,678,865 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl556,666,058 - 56,678,923 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0557,883,713 - 57,896,449 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,883,675 - 57,896,475 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0562,411,541 - 62,423,788 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,925,020 - 58,937,602 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera555,262,017 - 55,274,732 (-)NCBICelera
Cytogenetic Map5q22NCBI
Spmip6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554721,718,517 - 1,735,004 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554721,718,474 - 1,733,980 (+)NCBIChiLan1.0ChiLan1.0
SPMIP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,206,242 - 90,237,751 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1990,211,988 - 90,243,691 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0934,215,298 - 34,234,358 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1935,024,088 - 35,043,323 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl935,024,088 - 35,043,323 (-)Ensemblpanpan1.1panPan2
SPMIP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11151,078,682 - 51,092,014 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1151,078,808 - 51,091,818 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1149,708,243 - 49,721,779 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01152,020,666 - 52,034,204 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1152,020,792 - 52,033,804 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11150,683,358 - 50,696,893 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01150,551,460 - 50,564,997 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01151,316,258 - 51,329,796 (-)NCBIUU_Cfam_GSD_1.0
SPMIP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1032,419,795 - 32,435,884 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11032,419,965 - 32,435,622 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21036,588,942 - 36,604,343 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPMIP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11246,215,162 - 46,234,101 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1246,215,619 - 46,234,044 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603843,331,776 - 43,350,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013069785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01013864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000014653   ⟹   ENSHGLP00000014508
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473638,784,128 - 38,799,912 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000014654   ⟹   ENSHGLP00000014509
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473638,784,707 - 38,799,912 (-)Ensembl
RefSeq Acc Id: XM_013069785   ⟹   XP_012925239
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473638,784,071 - 38,800,097 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012925239 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014509
RefSeq Acc Id: XP_012925239   ⟸   XM_013069785
Ensembl Acc Id: ENSHGLP00000014508   ⟸   ENSHGLT00000014653
Ensembl Acc Id: ENSHGLP00000014509   ⟸   ENSHGLT00000014654


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010390 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000014654 ENTREZGENE
NCBI Gene CUNH9orf24 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-09 Spmip6  sperm microtubule inner protein 6  CUNH9orf24  chromosome unknown C9orf24 homolog  Symbol and/or name change 5135510 APPROVED