Spmip6 (sperm microtubule inner protein 6)

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Gene: Spmip6 (sperm microtubule inner protein 6) Mus musculus

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Symbol:

Spmip6

Name:

sperm microtubule inner protein 6

RGD ID:

1322223

MGI Page

MGI

Description:

Enables alpha-tubulin binding activity. Involved in flagellated sperm motility. Acts upstream of or within protein-containing complex assembly. Located in several cellular components, including manchette; perinuclear region of cytoplasm; and sperm midpiece. Is active in axonemal A tubule inner sheath and sperm flagellum. Is expressed in several structures, including sensory organ; skeleton; tarsus; testis; and thymus. Orthologous to human SPMIP6 (sperm microtubule inner protein 6).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

1110017D15Rik; Cbe1; ciliated bronchial epithelial protein 1; ciliated bronchial epithelium 1; likely ortholog of H. sapiens chromosome 9 open reading frame 24 (C9orf24); RP23-100C7.3; Sm; Smrp1; spermatid specific manchette related protein 1; spermatid-specific manchette-related protein 1; testes development-related NYD-SP22; testis development protein NYD-SP22; uncharacterized protein C9orf24 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	41,505,005 - 41,517,333 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	41,505,009 - 41,517,333 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	41,505,005 - 41,517,366 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	41,505,009 - 41,517,333 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	41,452,042 - 41,464,366 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	41,693,678 - 41,706,004 (-)	NCBI		MGSCv36	mm8
Celera	4	41,166,278 - 41,178,565 (-)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	21.7	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acromesomelic dysplasia, Maroteaux type (ISO)

anauxetic dysplasia (ISO)

distal arthrogryposis type 1A (ISO)

frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ISO)

galactosemia (ISO)

paraplegia (ISO)

primary ciliary dyskinesia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (EXP)

6-propyl-2-thiouracil (ISO)

acrylamide (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

Cuprizon (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

entinostat (ISO)

indometacin (ISO)

methylmercury chloride (ISO)

potassium chromate (ISO)

propanal (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

tetrachloromethane (ISO)

trichloroethene (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

flagellated sperm motility (IDA)

protein-containing complex assembly (IDA)

spermatogenesis (IEA)

Cellular Component

axonemal A tubule inner sheath (IDA)

cytoplasm (IDA)

cytosol (IEA,ISO)

manchette (IBA,IDA)

mitochondrion (IDA)

nucleoplasm (IEA,ISO)

nucleus (ISO,ISS)

perinuclear region of cytoplasm (IBA,IDA,ISO)

sperm flagellum (IDA)

sperm midpiece (IDA)

Molecular Function

alpha-tubulin binding (IBA,IDA)

protein binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

no abnormal phenotype detected (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11125038	PMID:11217851	PMID:12466851	PMID:12477932	PMID:15242845	PMID:16141072	PMID:16141073	PMID:17971504
PMID:18163442	PMID:19213785	PMID:21267068	PMID:21873635	PMID:27357688	PMID:27914912	PMID:31504408	PMID:37295417	PMID:38355793

Genomics

Comparative Map Data

Spmip6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	41,505,005 - 41,517,333 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	41,505,009 - 41,517,333 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	41,505,005 - 41,517,366 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	41,505,009 - 41,517,333 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	41,452,042 - 41,464,366 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	41,693,678 - 41,706,004 (-)	NCBI		MGSCv36	mm8
Celera	4	41,166,278 - 41,178,565 (-)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	21.7	NCBI

SPMIP6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	34,379,019 - 34,397,810 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	34,379,019 - 34,397,828 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	34,379,017 - 34,397,808 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	34,369,017 - 34,387,849 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	34,369,016 - 34,371,598	NCBI
Celera	9	34,310,522 - 34,329,350 (-)	NCBI		Celera
Cytogenetic Map	9	p13.3	NCBI
HuRef	9	34,334,107 - 34,352,947 (-)	NCBI		HuRef
CHM1_1	9	34,378,781 - 34,397,638 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	34,397,509 - 34,416,300 (-)	NCBI		T2T-CHM13v2.0

Spmip6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	61,462,070 - 61,474,832 (-)	NCBI		GRCr8
mRatBN7.2	5	56,666,160 - 56,678,865 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	56,666,058 - 56,678,923 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	5	57,883,713 - 57,896,449 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	57,883,675 - 57,896,475 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	62,411,541 - 62,423,788 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	58,925,020 - 58,937,602 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	55,262,017 - 55,274,732 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

Spmip6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955472	1,718,517 - 1,735,004 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955472	1,718,474 - 1,733,980 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPMIP6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	90,206,242 - 90,237,751 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	90,211,988 - 90,243,691 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	34,215,298 - 34,234,358 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	35,024,088 - 35,043,323 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	35,024,088 - 35,043,323 (-)	Ensembl	panpan1.1		panPan2

SPMIP6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	51,078,682 - 51,092,014 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	51,078,808 - 51,091,818 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	49,708,243 - 49,721,779 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	52,020,666 - 52,034,204 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	52,020,792 - 52,033,804 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	50,683,358 - 50,696,893 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	50,551,460 - 50,564,997 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	51,316,258 - 51,329,796 (-)	NCBI		UU_Cfam_GSD_1.0

SPMIP6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	32,419,795 - 32,435,884 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	32,419,965 - 32,435,622 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	36,588,942 - 36,604,343 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPMIP6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	46,215,162 - 46,234,101 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	46,215,619 - 46,234,044 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	43,331,776 - 43,350,648 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spmip6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624736	38,784,128 - 38,799,912 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624736	38,784,071 - 38,800,097 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Spmip6
378 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	994
Count of miRNA genes:	435
Interacting mature miRNAs:	502
Transcripts:	ENSMUST00000030152, ENSMUST00000095126, ENSMUST00000123356, ENSMUST00000123865, ENSMUST00000124019, ENSMUST00000125303, ENSMUST00000134546, ENSMUST00000138217
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301203	Alcp8_m	alcohol preference locus 8 (mouse)			Not determined		4	17395160	51395290	Mouse
1301586	Stheal3_m	soft tissue heal 3 (mouse)			Not determined		4	28658442	62658566	Mouse
10401115	Pgia35_m	proteoglycan induced arthritis 35 (mouse)			Not determined		4	12562377	46562509	Mouse
39128211	Lwq22_m	liver weight QTL 22 (mouse)					4	17892616	88982216	Mouse
1558992	Ses8_m	salmonella enteritidis susceptibility 8 (mouse)			Not determined		4	8683240	42683429	Mouse
4141302	Ssrq5_m	stress response QTL 5 (mouse)			Not determined			8683240	42683430	Mouse
4141555	Nbwa2_m	NZB and NZW autoimmunity 2 (mouse)			Not determined		4	17892515	51892635	Mouse
10412178	Habiir2_m	hyperoxic acute lung injury imprinted region 2 (mouse)			Not determined		4	39452126	63283678	Mouse
1300574	Im2_m	immunoregulatory 2 (mouse)			Not determined		4	28077682	62077816	Mouse
12880405	Jcdq1_m	joint cartilage degeneration QTL 1 (mouse)					4	12562377	46562509	Mouse
4142318	Lyr2_m	lymphoma resistance 2 (mouse)			Not determined			14010457	63283678	Mouse
1301697	Sluc18_m	susceptibility to lung cancer 18 (mouse)			Not determined		4	22373448	56373612	Mouse
1357453	Kidq4_m	kidney weight QTL 4 (mouse)			Not determined		4	17892616	88982216	Mouse
4142047	Mvwf3_m	modifier of von Willebrand factor 3 (mouse)			Not determined			14010457	117072206	Mouse
11567249	Elorr3_m	ethanol induced loss of righting response 3 (mouse)					4	3722677	156268235	Mouse
1357877	Synch1_m	synechia 1 (mouse)			Not determined		4	28709925	62710107	Mouse
1300977	Mopkd1_m	modifier of polycystic kidney disease progression 1 (mouse)			Not determined		4	36550839	70550967	Mouse
25440481	Moaq1_m	modifier of alien QTL 1 (mouse)					4	19500000	46000000	Mouse
1301237	Alcp7_m	alcohol preference locus 7 (mouse)			Not determined		4	17395160	51395290	Mouse
4141911	W6q15_m	weight 6 weeks QTL 15 (mouse)			Not determined			17892616	88982216	Mouse
1302075	Bdln6_m	body length 6 (mouse)			Not determined		4	22373448	56373612	Mouse
1302010	Wta1_m	weight adult 1 (mouse)			Not determined		4	8683240	42683429	Mouse
4142290	Ssrq9_m	stress response QTL 9 (mouse)			Not determined			34395160	46332776	Mouse
1301437	Scon1_m	sucrose consumption 1 (mouse)			Not determined		4	22373448	56373612	Mouse
10401905	Sicd3_m	seizure-induced cell death 3 (mouse)			Not determined		4	9395525	43760862	Mouse
1301473	Triglq1_m	triglyceride QTL 1 (mouse)			Not determined		4	8683240	42683429	Mouse
1300769	Pcyts2_m	plasmacytoma susceptibility 2 (mouse)			Not determined		4	22111944	56112145	Mouse
1301792	Hdlq10_m	HDL QTL 10 (mouse)			Not determined		4	35859707	69859853	Mouse
1301990	Arvm1_m	autoimmune renal vasculitis 1 (mouse)			Not determined		4	29332646	63332776	Mouse
1302116	Bbaa1_m	B.burgdorferi-associated arthritis 1 (mouse)			Not determined		4	38250930	72251078	Mouse
1302058	Hrtfm3_m	heart failure modifier 3 (mouse)			Not determined		4	22111944	56112145	Mouse
1302184	Aaom1_m	autoimmune aoritis in MRL mice 1 (mouse)			Not determined		4	24322299	46332776	Mouse
26884449	Sklq2_m	skull length QTL 2, 5 week (mouse)					4	36700000	128993793	Mouse
1302125	Lxw1_m	lupus BXSB x NZW 1 (mouse)			Not determined		4	8683240	42683429	Mouse

Markers in Region

1110017D15Rik

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	4	B1	UniSTS
cM Map	4	21.7	UniSTS

1110017D15Rik

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	4	B1	UniSTS

1110017D15Rik

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	4	B1	UniSTS

1110017D15Rik

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	4	B1	UniSTS

1110017D15Rik

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	4	B1	UniSTS

1110017D15Rik

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	4	B1	UniSTS

1110017D15Rik

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	4	B1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001048005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001253777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001253778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001253780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001253788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_028624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_045549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_045551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006538307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006538308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030253836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030253837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB231294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK003742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL831723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC049629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU700151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU939732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA463601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ873295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ873296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000030152 ⟹ ENSMUSP00000030152

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	41,505,009 - 41,517,333 (-)	Ensembl
GRCm38.p6 Ensembl	4	41,505,009 - 41,517,333 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000095126 ⟹ ENSMUSP00000092744

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	41,505,009 - 41,517,333 (-)	Ensembl
GRCm38.p6 Ensembl	4	41,505,009 - 41,517,333 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000123356

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	41,505,009 - 41,507,754 (-)	Ensembl
GRCm38.p6 Ensembl	4	41,505,009 - 41,507,754 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000123865

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	41,505,009 - 41,507,759 (-)	Ensembl
GRCm38.p6 Ensembl	4	41,505,009 - 41,507,759 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000124019

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	41,505,009 - 41,507,764 (-)	Ensembl
GRCm38.p6 Ensembl	4	41,505,009 - 41,507,764 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000125303 ⟹ ENSMUSP00000122537

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	41,505,009 - 41,511,467 (-)	Ensembl
GRCm38.p6 Ensembl	4	41,505,009 - 41,511,467 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000134546

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	41,507,125 - 41,517,328 (-)	Ensembl
GRCm38.p6 Ensembl	4	41,507,125 - 41,517,328 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000138217

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	41,508,534 - 41,508,964 (-)	Ensembl
GRCm38.p6 Ensembl	4	41,508,534 - 41,508,964 (-)	Ensembl

RefSeq Acc Id:

NM_001048005 ⟹ NP_001041470

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	41,505,009 - 41,517,333 (-)	NCBI
GRCm38	4	41,505,009 - 41,517,333 (-)	NCBI
MGSCv37	4	41,452,042 - 41,464,366 (-)	RGD
Celera	4	41,166,278 - 41,178,565 (-)	RGD
cM Map	4		ENTREZGENE

Sequence:

show sequence

AAGAAAGCTGAGGGGGAAGATACTGAGAGGTCCCCCAAAGGAAGGGGTCACAGCATCTAGGGGC
ACCTTCCAGGCCGGAGGTGTGGGCTATTTAGGGGAAGGGGTAGTCACAGATGTCCAGCAGGAGT
CCTTGAGAGGCAAAGCCCACTACAGCATCCCTGAGACCCTACCATGTTCCTCTTCTCCCGGAAG
ACCAAGACCCCCATCAGCACCTACAGTGACTCCTACAGGGCTCCTACCTCCATCAAGGAGGTCT
ATAAGGACCCACCACTATGGGCCTGGGAAGCCAACAAGTTTGTGACCCCAGGTCTGACTCAGAC
TATGCACCGCCACGTGGACCCTGAGGCCCTGCAGAAGATGACCAAATGTGCCGCACAGGACTAC
ACCTATAAGAGTTCCATATCAGGTCACCCTTATTTGCCTGAGAAATACTGGCTCTCTCCAGATG
AAGAGGACAAATGCTGTCCGAGCTACCTGGACAATGACCGGTACAACACGTGGAAGACGAGTCC
TTGCAGCAACTACTGGAACAAGTATACCGGCTGTCTTCCTCGACTGTCCAAGGACACCGGGATG
GAGTCAGTTCGAGGAATGCCGTTGGAATATCCTCCTAAGCAGGAGCGCCTCAACGCCTACGAGC
GCGAGGTAGTGGTGAACATGCTGAACTCGCTGTCTCGGAACCGGACTCTGCCGCAGATTGTACC
CCGCTGTGGGTGCGTGGACCCTCTCCCGGGCCGATTGCCATACCAAGGATATGAAAGCCCTTGC
TCCGGCCGCCACTACTGTCTGCGCGGGATGGACTACTGCACCACCCGGGAGCCTAGCACAGAAC
GCCGCCTGCGGCCTTTGTGCTCGCAGCAGCCGACTGAGTGTGTCGCCCTTCGGTCACCGGCCAG
GAATGCAATGTGCTGTTACAACTCCCCCGCCATCATTTTACCCGTATCCCAACCTTAGATGGGA
CACAAGTCACTTCAAGAAGACTGGTGGTTCCCAGAGAAACAACTATGTAGTCCATCCTGAGTTT
GTGTCTGAGACCTGTCCTGTCTACCCTTCCTAGTAAAGCTTTGACCAGGCCAAGGGAGGAAGTG
GCTCAATAAACTCTTCACCACAAAGAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001253777 ⟹ NP_001240706

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	41,505,009 - 41,517,333 (-)	NCBI
GRCm38	4	41,505,009 - 41,517,333 (-)	NCBI
Celera	4	41,166,278 - 41,178,565 (-)	ENTREZGENE
cM Map	4		ENTREZGENE

Sequence:

show sequence

AAGAAAGCTGAGGGGGAAGATACTGAGAGGTCCCCCAAAGGAAGGGGTCACAGCATCTAGGGGC
ACCTTCCAGGCCGGAGGTGTGGGCTATTTAGGGGAAGGGGTAGTCACAGATGTCCAGCAGGAGT
CCTTGAGAGGCAAAGCCCACTACAGCATCCCTGAGACCCTACCATGTTCCTCTTCTCCCGGAAG
ACCAAGACCCCCATCAGCACCTACAGTGACTCCTACAGGGCTCCTACCTCCATCAAGGAGGTCT
ATAAGGACCCACCACTATGGGCCTGGGAAGCCAACAAGTTTGTGACCCCAGGTCTGACTCAGAC
TATGCACCGCCACGTGGACCCTGAGGCCCTGCAGAAGATGACCAAATGTGCCGCACAGGACTAC
ACCTATAAGAGTTCCATATCAGGTCACCCTTATTTGCCTGAGAAATACTGGCTCTCTCCAGATG
AAGAGGACAAATGCTGTCCGAGCTACCTGGACAATGACCGGTACAACACGTGGAAGACGAGTCC
TTGCAGCAACTACTGGAACAAGTATACCGGCTGTCTTCCTCGACTGTCCAAGGACACCGGGATG
GAGTCAGTTCGAGGAATGCCGTTGGAATATCCTCCTAAGCAGGAGCGCCTCAACGCCTACGAGC
GCGAGGTAGTGGTGAACATGCTGAACTCGCTGTCTCGGAACCGGACTCTGCCGCAGATTGTACC
CCGCTGTGGGTGCGTGGACCCTCTCCCGGGCCGATTGCCATACCAAGGATATGAAAGCCCTTGC
TCCGGCCGCCACTACTGTCTGCGCGGGATGGACTACTGCACCACCCGGGAGCCTAGCACAGAAC
GCCGCCTGCGGCCTTTGTGCTCGCAGCAGCCGACTGTAAGGAGTGTGTCGCCCTTCGGTCACCG
GCCAGGAATGCAATGTGCTGTTACAACTCCCCCGCCATCATTTTACCCGTATCCCAACCTTAGA
TGGGACACAAGTCACTTCAAGAAGACTGGTGGTTCCCAGAGAAACAACTATGTAGTCCATCCTG
AGTTTGTGTCTGAGACCTGTCCTGTCTACCCTTCCTAGTAAAGCTTTGACCAGGCCAAGGGAGG
AAGTGGCTCAATAAACTCTTCACCACAAAGA

hide sequence

RefSeq Acc Id:

NM_001253778 ⟹ NP_001240707

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	41,505,009 - 41,507,764 (-)	NCBI
GRCm38	4	41,505,009 - 41,507,764 (-)	NCBI
Celera	4	41,166,278 - 41,178,565 (-)	ENTREZGENE
cM Map	4		ENTREZGENE

Sequence:

show sequence

GAAACAACCCAGGAGAACAGGGAGCTGCTGAGGAGAGGAGACTGTTCCGCCTGAAAGACAGTCT
GGATATTCTGGGAGGGCATTTCCCCCTCAGAGCCCCCCCCCCCAAAAAAAAGAGAGGTAGCAAA
TGTTTCGAGTTAGAGCTTAAGGTACCACGTGTGCCACTTCCAGGACACCGGGATGGAGTCAGTT
CGAGGAATGCCGTTGGAATATCCTCCTAAGCAGGAGCGCCTCAACGCCTACGAGCGCGAGGTAG
TGGTGAACATGCTGAACTCGCTGTCTCGGAACCGGACTCTGCCGCAGATTGTACCCCGCTGTGG
GTGCGTGGACCCTCTCCCGGGCCGATTGCCATACCAAGGATATGAAAGCCCTTGCTCCGGCCGC
CACTACTGTCTGCGCGGGATGGACTACTGCACCACCCGGGAGCCTAGCACAGAACGCCGCCTGC
GGCCTTTGTGCTCGCAGCAGCCGACTGTAAGGAGTGTGTCGCCCTTCGGTCACCGGCCAGGAAT
GCAATGTGCTGTTACAACTCCCCCGCCATCATTTTACCCGTATCCCAACCTTAGATGGGACACA
AGTCACTTCAAGAAGACTGGTGGTTCCCAGAGAAACAACTATGTAGTCCATCCTGAGTTTGTGT
CTGAGACCTGTCCTGTCTACCCTTCCTAGTAAAGCTTTGACCAGGCCAAGGGAGGAAGTGGCTC
AATAAACTCTTCACCACAAAGA

hide sequence

RefSeq Acc Id:

NM_001253780 ⟹ NP_001240709

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	41,505,014 - 41,507,764 (-)	NCBI
GRCm38	4	41,505,014 - 41,507,764 (-)	NCBI
Celera	4	41,166,278 - 41,178,565 (-)	ENTREZGENE
cM Map	4		ENTREZGENE

Sequence:

show sequence

GAAACAACCCAGGAGAACAGGGAGCTGCTGAGGAGAGGAGACTGTTCCGCCTGAAAGACAGTCT
GGATATTCTGGGAGGGCATTTCCCCCTCAGAGCCCCCCCCCCCAAAAAAAAGAGAGGTAGCAAA
TGTTTCGAGTTAGAGCTTAAGGTACCACGTGTGCCACTTCCAGGACACCGGGATGGAGTCAGTT
CGAGGAATGCCGTTGGAATATCCTCCTAAGCAGGAGCGCCTCAACGCCTACGGAGTGTGTCGCC
CTTCGGTCACCGGCCAGGAATGCAATGTGCTGTTACAACTCCCCCGCCATCATTTTACCCGTAT
CCCAACCTTAGATGGGACACAAGTCACTTCAAGAAGACTGGTGGTTCCCAGAGAAACAACTATG
TAGTCCATCCTGAGTTTGTGTCTGAGACCTGTCCTGTCTACCCTTCCTAGTAAAGCTTTGACCA
GGCCAAGGGAGGAAGTGGCTCAATAAACTCTTCACCAC

hide sequence

RefSeq Acc Id:

NM_001253788 ⟹ NP_001240717

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	41,505,009 - 41,517,333 (-)	NCBI
GRCm38	4	41,505,009 - 41,517,333 (-)	NCBI
Celera	4	41,166,278 - 41,178,565 (-)	ENTREZGENE
cM Map	4		ENTREZGENE

Sequence:

show sequence

AAGAAAGCTGAGGGGGAAGATACTGAGAGGTCCCCCAAAGGAAGGGGTCACAGCATCTAGGGGC
ACCTTCCAGGCCGGAGGTGTGGGCTATTTAGGGGAAGGGGTAGTCACAGATGTCCAGCAGGAGT
CCTTGAGAGGCAAAGCCCACTACAGCATCCCTGAGACCCTACCATGTTCCTCTTCTCCCGGAAG
ACCAAGACCCCCATCAGCACCTACAGTGACTCCTACAGGGCTCCTACCTCCATCAAGGAGGTCT
ATAAGGACCCACCACTATGGGCCTGGGAAGCCAACAAGTTTGTGACCCCAGGTCTGACTCAGAC
TATGCACCGCCACGTGGACCCTGAGGCCCTGCAGAAGATGACCAAATGTGCCGCACAGGACTAC
ACCTATAAGAGTTCCATATCAGGTCACCCTTATTTGCCTGAGAAATACTGGCTCTCTCCAGATG
AAGAGGACAAATGCTGTCCGAGCTACCTGGACAATGACCGGTACAACACGTGGAAGACGAGTCC
TTGCAGCAACTACTGGAACAAGTATACCGGCTGTCTTCCTCGACTGTCCAAGGACACCGGGATG
GAGTCAGTTCGAGGAATGCCGTTGGAATATCCTCCTAAGCAGGAGCGCCTCAACGCCTACGGAG
TGTGTCGCCCTTCGGTCACCGGCCAGGAATGCAATGTGCTGTTACAACTCCCCCGCCATCATTT
TACCCGTATCCCAACCTTAGATGGGACACAAGTCACTTCAAGAAGACTGGTGGTTCCCAGAGAA
ACAACTATGTAGTCCATCCTGAGTTTGTGTCTGAGACCTGTCCTGTCTACCCTTCCTAGTAAAG
CTTTGACCAGGCCAAGGGAGGAAGTGGCTCAATAAACTCTTCACCACAAAGA

hide sequence

RefSeq Acc Id:

NM_028624 ⟹ NP_082900

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	41,505,009 - 41,507,764 (-)	NCBI
GRCm38	4	41,505,009 - 41,507,764 (-)	NCBI
MGSCv37	4	41,452,042 - 41,464,366 (-)	RGD
Celera	4	41,166,278 - 41,178,565 (-)	RGD
cM Map	4		ENTREZGENE

Sequence:

show sequence

GAAACAACCCAGGAGAACAGGGAGCTGCTGAGGAGAGGAGACTGTTCCGCCTGAAAGACAGTCT
GGATATTCTGGGAGGGCATTTCCCCCTCAGAGCCCCCCCCCCCAAAAAAAAGAGAGGTAGCAAA
TGTTTCGAGTTAGAGCTTAAGGTACCACGTGTGCCACTTCCAGGACACCGGGATGGAGTCAGTT
CGAGGAATGCCGTTGGAATATCCTCCTAAGCAGGAGCGCCTCAACGCCTACGAGCGCGAGGTAG
TGGTGAACATGCTGAACTCGCTGTCTCGGAACCGGACTCTGCCGCAGATTGTACCCCGCTGTGG
GTGCGTGGACCCTCTCCCGGGCCGATTGCCATACCAAGGATATGAAAGCCCTTGCTCCGGCCGC
CACTACTGTCTGCGCGGGATGGACTACTGCACCACCCGGGAGCCTAGCACAGAACGCCGCCTGC
GGCCTTTGTGCTCGCAGCAGCCGACTGAGTGTGTCGCCCTTCGGTCACCGGCCAGGAATGCAAT
GTGCTGTTACAACTCCCCCGCCATCATTTTACCCGTATCCCAACCTTAGATGGGACACAAGTCA
CTTCAAGAAGACTGGTGGTTCCCAGAGAAACAACTATGTAGTCCATCCTGAGTTTGTGTCTGAG
ACCTGTCCTGTCTACCCTTCCTAGTAAAGCTTTGACCAGGCCAAGGGAGGAAGTGGCTCAATAA
ACTCTTCACCACAAAGAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_045549

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	41,505,009 - 41,517,333 (-)	NCBI
GRCm38	4	41,505,009 - 41,517,333 (-)	NCBI
Celera	4	41,166,278 - 41,178,565 (-)	ENTREZGENE
cM Map	4		ENTREZGENE

Sequence:

show sequence

AAGAAAGCTGAGGGGGAAGATACTGAGAGGTCCCCCAAAGGAAGGGGTCACAGCATCTAGGGGC
ACCTTCCAGGCCGGAGGTGTGGGCTATTTAGGGGAAGGGGTAGTCACAGATGTCCAGCAGGAGT
CCTTGAGAGGCAAAGCCCACTACAGCATCCCTGAGACCCTACCATGTTCCTCTTCTCCCGGAAG
ACCAAGACCCCCATCAGCACCTACAGTGACTCCTACAGGGCTCCTACCTCCATCAAGGAGGTCT
ATAAGGACCCACCACTATGGGCCTGGGAAGCCAACAAGTTTGTGACCCCAGGTCTGACTCAGAC
TATGCACCGCCACGTGGACCCTGAGGCCCTGCAGAAGATGACCAAATGTGCCGCACAGGACTAC
ACCTATAAGAGTTCCATATCAGGTCACCCTTATTTGCCTGAGAAATACTGGCTCTCTCCAGATG
AAGAGGACAAATGCTGTCCGAGCTACCTGGACAATGACCGGTACAACACGTGGAAGACGAGTCC
TTGCAGCAACTACTGGAACAAGTATACCGGCTGTCTTCCTCGACTGTCCAAGGACACCGGGATG
GAGTCAGTTCGAGGAATGCCGTTGGAATATCCTCCTAAGCAGGAGCGCCTCAACGCCTACGATT
GTACCCCGCTGTGGGTGCGTGGACCCTCTCCCGGGCCGATTGCCATACCAAGGATATGAAAGCC
CTTGCTCCGGCCGCCACTACTGTCTGCGCGGGATGGACTACTGCACCACCCGGGAGCCTAGCAC
AGAACGCCGCCTGCGGCCTTTGTGCTCGCAGCAGCCGACTGTAAGGAGTGTGTCGCCCTTCGGT
CACCGGCCAGGAATGCAATGTGCTGTTACAACTCCCCCGCCATCATTTTACCCGTATCCCAACC
TTAGATGGGACACAAGTCACTTCAAGAAGACTGGTGGTTCCCAGAGAAACAACTATGTAGTCCA
TCCTGAGTTTGTGTCTGAGACCTGTCCTGTCTACCCTTCCTAGTAAAGCTTTGACCAGGCCAAG
GGAGGAAGTGGCTCAATAAACTCTTCACCACAAAGA

hide sequence

RefSeq Acc Id:

NR_045551

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	41,505,009 - 41,507,764 (-)	NCBI
GRCm38	4	41,505,009 - 41,507,764 (-)	NCBI
Celera	4	41,166,278 - 41,178,565 (-)	ENTREZGENE
cM Map	4		ENTREZGENE

Sequence:

show sequence

GAAACAACCCAGGAGAACAGGGAGCTGCTGAGGAGAGGAGACTGTTCCGCCTGAAAGACAGTCT
GGATATTCTGGGAGGGCATTTCCCCCTCAGAGCCCCCCCCCCCAAAAAAAAGAGAGGTAGCAAA
TGTTTCGAGTTAGAGCTTAAGGTACCACGTGTGCCACTTCCAGGACACCGGGATGGAGTCAGTT
CGAGGAATGCCGTTGGAATATCCTCCTAAGCAGGAGCGCCTCAACGCCTACGATTGTACCCCGC
TGTGGGTGCGTGGACCCTCTCCCGGGCCGATTGCCATACCAAGGATATGAAAGCCCTTGCTCCG
GCCGCCACTACTGTCTGCGCGGGATGGACTACTGCACCACCCGGGAGCCTAGCACAGAACGCCG
CCTGCGGCCTTTGTGCTCGCAGCAGCCGACTGAGTGTGTCGCCCTTCGGTCACCGGCCAGGAAT
GCAATGTGCTGTTACAACTCCCCCGCCATCATTTTACCCGTATCCCAACCTTAGATGGGACACA
AGTCACTTCAAGAAGACTGGTGGTTCCCAGAGAAACAACTATGTAGTCCATCCTGAGTTTGTGT
CTGAGACCTGTCCTGTCTACCCTTCCTAGTAAAGCTTTGACCAGGCCAAGGGAGGAAGTGGCTC
AATAAACTCTTCACCACAAAGA

hide sequence

RefSeq Acc Id:

XM_006538307 ⟹ XP_006538370

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	41,505,005 - 41,512,941 (-)	NCBI
GRCm38	4	41,505,005 - 41,512,939 (-)	NCBI

Sequence:

show sequence

GTGTGTGTGTATTAGAGTGTTTGGTGTGTGTATATATGTATATGAATGCACATCTGAGTAGGTT
TAAATGTAGCTAGGCCCTGTGTGTGTGAAGCTTGGGGAAGCCCTGAGCCTTGGCTCCCTTGCAC
ATACTGCTTGCTCCCACACTGCTTTCCCACAAGGGACTGTCACCGTGCCACATAAGTCAGGACA
ACACCAGCTAGGCACACGTTATCCCAGAGGGTCCTGAACTAAGGACCGTTCTGGGAGCAGCCAG
ACATTAGCCATACACACAAAGCTCCTTTGCCCTTGATAATCATATGGCTGAGTGGGAGCGGTCT
CAGCTAGCTTTGCCGACTGCCCGTCTATAGAGACCCATGAAACCCATACTTTGTTTGGTATTCT
GCCCTCACCTGAAAACAAGGGGACCCCAAAAGGAGGTCTTCATTTGGGTTTCCATTGATCTATT
CAAACAAGGAGTGATGGGCTGGGGTGAGGTGAACTTCAATAAGTGGAGGGGCCCAGAGTCCAGA
TTAAGAATGGGGAAAATATCAGGGCTGGATAAGGACAGACTCTCAAGGTGGAGGGTCATATTGG
TGTCAGAGAAAGGACCACAGCAGAATCAGGGTCTTGTTAGAGACAGCCTAGCACATTTTAAAGC
AGACATCCCACCAAGCCCATCCTTCTGCTTTAAGGTCCCAGATGCCCTCCCTGTCCAAGAAATC
TGCATAACACAGTCAGTTCCCAGGAAACCAGCCTCTCTCAAAGCTCTAGGTTGTATCCACTGGT
CCTGCTAGAGGAGACTCCAGCTCTGTTCCTGGGTCTGACTCAGACTATGCACCGCCACGTGGAC
CCTGAGGCCCTGCAGAAGATGACCAAATGTGCCGCACAGGACTACACCTATAAGAGTTCCATAT
CAGGTCACCCTTATTTGCCTGAGAAATACTGGCTCTCTCCAGATGAAGAGGACAAATGCTGTCC
GAGCTACCTGGACAATGACCGGTACAACACGTGGAAGACGAGTCCTTGCAGCAACTACTGGAAC
AAGTATACCGGCTGTCTTCCTCGACTGTCCAAGGACACCGGGATGGAGTCAGTTCGAGGAATGC
CGTTGGAATATCCTCCTAAGCAGGAGCGCCTCAACGCCTACGAGCGCGAGGTAGTGGTGAACAT
GCTGAACTCGCTGTCTCGGAACCGGACTCTGCCGCAGATTGTACCCCGCTGTGGGTGCGTGGAC
CCTCTCCCGGGCCGATTGCCATACCAAGGATATGAAAGCCCTTGCTCCGGCCGCCACTACTGTC
TGCGCGGGATGGACTACTGCACCACCCGGGAGCCTAGCACAGAACGCCGCCTGCGGCCTTTGTG
CTCGCAGCAGCCGACTGTAAGGAGTGTGTCGCCCTTCGGTCACCGGCCAGGAATGCAATGTGCT
GTTACAACTCCCCCGCCATCATTTTACCCGTATCCCAACCTTAGATGGGACACAAGTCACTTCA
AGAAGACTGGTGGTTCCCAGAGAAACAACTATGTAGTCCATCCTGAGTTTGTGTCTGAGACCTG
TCCTGTCTACCCTTCCTAGTAAAGCTTTGACCAGGCCAAGGGAGGAAGTGGCTCAATAAACTCT
TCACCACAAAGACTGC

hide sequence

RefSeq Acc Id:

XM_006538308 ⟹ XP_006538371

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	41,505,005 - 41,509,082 (-)	NCBI
GRCm38	4	41,505,005 - 41,508,978 (-)	NCBI

Sequence:

show sequence

GTCTATTCTGCTAACCATGACATTATTTTTGTCTCCTGGTGAAGGTATCACAGGGAAAAAGGAA
TGAGATCATAAAGGAAGAGGGGAGAAATTCAAGTGCTTTCAAGGTTGAATAGGCAGACCTTGGG
GCCTGGGATATGGTAGAGAGAGGGAGGCATCATTTCCAGGCTAGAGGATTCAAAGAGGGTGCAG
CCAGGATGAAATCTTATAGCTCAAAGACCCCAAAGCTTGCTCAAAGGTGTCCCTTAGAGGACAA
ATGCTGTCCGAGCTACCTGGACAATGACCGGTACAACACGTGGAAGACGAGTCCTTGCAGCAAC
TACTGGAACAAGTATACCGGCTGTCTTCCTCGACTGTCCAAGGACACCGGGATGGAGTCAGTTC
GAGGAATGCCGTTGGAATATCCTCCTAAGCAGGAGCGCCTCAACGCCTACGAGCGCGAGGTAGT
GGTGAACATGCTGAACTCGCTGTCTCGGAACCGGACTCTGCCGCAGATTGTACCCCGCTGTGGG
TGCGTGGACCCTCTCCCGGGCCGATTGCCATACCAAGGATATGAAAGCCCTTGCTCCGGCCGCC
ACTACTGTCTGCGCGGGATGGACTACTGCACCACCCGGGAGCCTAGCACAGAACGCCGCCTGCG
GCCTTTGTGCTCGCAGCAGCCGACTGTAAGGAGTGTGTCGCCCTTCGGTCACCGGCCAGGAATG
CAATGTGCTGTTACAACTCCCCCGCCATCATTTTACCCGTATCCCAACCTTAGATGGGACACAA
GTCACTTCAAGAAGACTGGTGGTTCCCAGAGAAACAACTATGTAGTCCATCCTGAGTTTGTGTC
TGAGACCTGTCCTGTCTACCCTTCCTAGTAAAGCTTTGACCAGGCCAAGGGAGGAAGTGGCTCA
ATAAACTCTTCACCACAAAGACTGC

hide sequence

RefSeq Acc Id:

XM_030253836 ⟹ XP_030109696

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	41,505,005 - 41,512,932 (-)	NCBI
GRCm38	4	41,505,005 - 41,512,932 (-)	NCBI

Sequence:

show sequence

TATTAGAGTGTTTGGTGTGTGTATATATGTATATGAATGCACATCTGAGTAGGTTTAAATGTAG
CTAGGCCCTGTGTGTGTGAAGCTTGGGGAAGCCCTGAGCCTTGGCTCCCTTGCACATACTGCTT
GCTCCCACACTGCTTTCCCACAAGGGACTGTCACCGTGCCACATAAGTCAGGACAACACCAGCT
AGGCACACGTTATCCCAGAGGGTCCTGAACTAAGGACCGTTCTGGGAGCAGCCAGACATTAGCC
ATACACACAAAGCTCCTTTGCCCTTGATAATCATATGGCTGAGTGGGAGCGGTCTCAGCTAGCT
TTGCCGACTGCCCGTCTATAGAGACCCATGAAACCCATACTTTGTTTGGTATTCTGCCCTCACC
TGAAAACAAGGGGACCCCAAAAGGAGGTCTTCATTTGGGTTTCCATTGATCTATTCAAACAAGG
AGTGATGGGCTGGGGTGAGGTGAACTTCAATAAGTGGAGGGGCCCAGAGTCCAGATTAAGAATG
GGGAAAATATCAGGGCTGGATAAGGACAGACTCTCAAGGTGGAGGGTCATATTGGTGTCAGAGA
AAGGACCACAGCAGAATCAGGGTCTTGTTAGAGACAGCCTAGCACATTTTAAAGCAGACATCCC
ACCAAGCCCATCCTTCTGCTTTAAGGTCCCAGATGCCCTCCCTGTCCAAGAAATCTGCATAACA
CAGTCAGTTCCCAGGAAACCAGCCTCTCTCAAAGCTCTAGGTTGTATCCACTGGTCCTGCTAGA
GGAGACTCCAGCTCTGTTCCTGGGTCTGACTCAGACTATGCACCGCCACGTGGACCCTGAGGCC
CTGCAGAAGATGACCAAATGTGCCGCACAGGACTACACCTATAAGAGTTCCATATCAGGTCACC
CTTATTTGCCTGAGAAATACTGGCTCTCTCCAGATGAAGAGGACAAATGCTGTCCGAGCTACCT
GGACAATGACCGGTACAACACGTGGAAGACGAGTCCTTGCAGCAACTACTGGAACAAGTATACC
GGCTGTCTTCCTCGACTGTCCAAGGACACCGGGATGGAGTCAGTTCGAGGAATGCCGTTGGAAT
ATCCTCCTAAGCAGGAGCGCCTCAACGCCTACGAGCGCGAGGTAGTGGTGAACATGCTGAACTC
GCTGTCTCGGAACCGGACTCTGCCGCAGATTGTACCCCGCTGTGGGTGCGTGGACCCTCTCCCG
GGCCGATTGCCATACCAAGGATATGAAAGCCCTTGCTCCGGCCGCCACTACTGTCTGCGCGGGA
TGGACTACTGCACCACCCGGGAGCCTAGCACAGAACGCCGCCTGCGGCCTTTGTGCTCGCAGCA
GCCGACTGAGTGTGTCGCCCTTCGGTCACCGGCCAGGAATGCAATGTGCTGTTACAACTCCCCC
GCCATCATTTTACCCGTATCCCAACCTTAGATGGGACACAAGTCACTTCAAGAAGACTGGTGGT
TCCCAGAGAAACAACTATGTAGTCCATCCTGAGTTTGTGTCTGAGACCTGTCCTGTCTACCCTT
CCTAGTAAAGCTTTGACCAGGCCAAGGGAGGAAGTGGCTCAATAAACTCTTCACCACAAAGACT
GC

hide sequence

RefSeq Acc Id:

XM_030253837 ⟹ XP_030109697

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	41,505,005 - 41,509,038 (-)	NCBI
GRCm38	4	41,505,005 - 41,508,964 (-)	NCBI

Sequence:

show sequence

GTATCACAGGGAAAAAGGAATGAGATCATAAAGGAAGAGGGGAGAAATTCAAGTGCTTTCAAGG
TTGAATAGGCAGACCTTGGGGCCTGGGATATGGTAGAGAGAGGGAGGCATCATTTCCAGGCTAG
AGGATTCAAAGAGGGTGCAGCCAGGATGAAATCTTATAGCTCAAAGACCCCAAAGCTTGCTCAA
AGGTGTCCCTTAGAGGACAAATGCTGTCCGAGCTACCTGGACAATGACCGGTACAACACGTGGA
AGACGAGTCCTTGCAGCAACTACTGGAACAAGTATACCGGCTGTCTTCCTCGACTGTCCAAGGA
CACCGGGATGGAGTCAGTTCGAGGAATGCCGTTGGAATATCCTCCTAAGCAGGAGCGCCTCAAC
GCCTACGAGCGCGAGGTAGTGGTGAACATGCTGAACTCGCTGTCTCGGAACCGGACTCTGCCGC
AGATTGTACCCCGCTGTGGGTGCGTGGACCCTCTCCCGGGCCGATTGCCATACCAAGGATATGA
AAGCCCTTGCTCCGGCCGCCACTACTGTCTGCGCGGGATGGACTACTGCACCACCCGGGAGCCT
AGCACAGAACGCCGCCTGCGGCCTTTGTGCTCGCAGCAGCCGACTGAGTGTGTCGCCCTTCGGT
CACCGGCCAGGAATGCAATGTGCTGTTACAACTCCCCCGCCATCATTTTACCCGTATCCCAACC
TTAGATGGGACACAAGTCACTTCAAGAAGACTGGTGGTTCCCAGAGAAACAACTATGTAGTCCA
TCCTGAGTTTGTGTCTGAGACCTGTCCTGTCTACCCTTCCTAGTAAAGCTTTGACCAGGCCAAG
GGAGGAAGTGGCTCAATAAACTCTTCACCACAAAGACTGC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001041470	(Get FASTA)	NCBI Sequence Viewer
	NP_001240706	(Get FASTA)	NCBI Sequence Viewer
	NP_001240707	(Get FASTA)	NCBI Sequence Viewer
	NP_001240709	(Get FASTA)	NCBI Sequence Viewer
	NP_001240717	(Get FASTA)	NCBI Sequence Viewer
	NP_082900	(Get FASTA)	NCBI Sequence Viewer
	XP_006538370	(Get FASTA)	NCBI Sequence Viewer
	XP_006538371	(Get FASTA)	NCBI Sequence Viewer
	XP_030109696	(Get FASTA)	NCBI Sequence Viewer
	XP_030109697	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABI35956	(Get FASTA)	NCBI Sequence Viewer
	ABI35957	(Get FASTA)	NCBI Sequence Viewer
	BAB22974	(Get FASTA)	NCBI Sequence Viewer
	BAE78528	(Get FASTA)	NCBI Sequence Viewer
	EDL05400	(Get FASTA)	NCBI Sequence Viewer
	EDL05401	(Get FASTA)	NCBI Sequence Viewer
	EDL05402	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000030152
	ENSMUSP00000030152.7
	ENSMUSP00000092744
	ENSMUSP00000092744.5
	ENSMUSP00000122537
	ENSMUSP00000122537.2
GenBank Protein	Q2MH31	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001041470 ⟸ NM_001048005
- Peptide Label:	isoform 1
- UniProtKB:	Q0GC36 (UniProtKB/Swiss-Prot), Q9D1B3 (UniProtKB/Swiss-Prot), Q2MH31 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MFLFSRKTKTPISTYSDSYRAPTSIKEVYKDPPLWAWEANKFVTPGLTQTMHRHVDPEALQKMT KCAAQDYTYKSSISGHPYLPEKYWLSPDEEDKCCPSYLDNDRYNTWKTSPCSNYWNKYTGCLPR LSKDTGMESVRGMPLEYPPKQERLNAYEREVVVNMLNSLSRNRTLPQIVPRCGCVDPLPGRLPY QGYESPCSGRHYCLRGMDYCTTREPSTERRLRPLCSQQPTECVALRSPARNAMCCYNSPAIILP VSQP hide sequence

RefSeq Acc Id:	NP_082900 ⟸ NM_028624
- Peptide Label:	isoform 2
- UniProtKB:	Q2MH31 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MESVRGMPLEYPPKQERLNAYEREVVVNMLNSLSRNRTLPQIVPRCGCVDPLPGRLPYQGYESP CSGRHYCLRGMDYCTTREPSTERRLRPLCSQQPTECVALRSPARNAMCCYNSPAIILPVSQP hide sequence

RefSeq Acc Id:	NP_001240717 ⟸ NM_001253788
- Peptide Label:	isoform 6
- UniProtKB:	A2ANN9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFLFSRKTKTPISTYSDSYRAPTSIKEVYKDPPLWAWEANKFVTPGLTQTMHRHVDPEALQKMT KCAAQDYTYKSSISGHPYLPEKYWLSPDEEDKCCPSYLDNDRYNTWKTSPCSNYWNKYTGCLPR LSKDTGMESVRGMPLEYPPKQERLNAYGVCRPSVTGQECNVLLQLPRHHFTRIPTLDGTQVTSR RLVVPRETTM hide sequence

RefSeq Acc Id:	NP_001240706 ⟸ NM_001253777
- Peptide Label:	isoform 3
- UniProtKB:	Q2MH31 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MFLFSRKTKTPISTYSDSYRAPTSIKEVYKDPPLWAWEANKFVTPGLTQTMHRHVDPEALQKMT KCAAQDYTYKSSISGHPYLPEKYWLSPDEEDKCCPSYLDNDRYNTWKTSPCSNYWNKYTGCLPR LSKDTGMESVRGMPLEYPPKQERLNAYEREVVVNMLNSLSRNRTLPQIVPRCGCVDPLPGRLPY QGYESPCSGRHYCLRGMDYCTTREPSTERRLRPLCSQQPTVRSVSPFGHRPGMQCAVTTPPPSF YPYPNLRWDTSHFKKTGGSQRNNYVVHPEFVSETCPVYPS hide sequence

RefSeq Acc Id:	NP_001240707 ⟸ NM_001253778
- Peptide Label:	isoform 4
- UniProtKB:	Q2MH31 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MESVRGMPLEYPPKQERLNAYEREVVVNMLNSLSRNRTLPQIVPRCGCVDPLPGRLPYQGYESP CSGRHYCLRGMDYCTTREPSTERRLRPLCSQQPTVRSVSPFGHRPGMQCAVTTPPPSFYPYPNL RWDTSHFKKTGGSQRNNYVVHPEFVSETCPVYPS hide sequence

RefSeq Acc Id:	NP_001240709 ⟸ NM_001253780
- Peptide Label:	isoform 5
- Sequence:	show sequence MESVRGMPLEYPPKQERLNAYGVCRPSVTGQECNVLLQLPRHHFTRIPTLDGTQVTSRRLVVPR ETTM hide sequence

RefSeq Acc Id:	XP_006538370 ⟸ XM_006538307
- Peptide Label:	isoform X1
- UniProtKB:	F7CUE2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHRHVDPEALQKMTKCAAQDYTYKSSISGHPYLPEKYWLSPDEEDKCCPSYLDNDRYNTWKTSP CSNYWNKYTGCLPRLSKDTGMESVRGMPLEYPPKQERLNAYEREVVVNMLNSLSRNRTLPQIVP RCGCVDPLPGRLPYQGYESPCSGRHYCLRGMDYCTTREPSTERRLRPLCSQQPTVRSVSPFGHR PGMQCAVTTPPPSFYPYPNLRWDTSHFKKTGGSQRNNYVVHPEFVSETCPVYPS hide sequence

RefSeq Acc Id:	XP_006538371 ⟸ XM_006538308
- Peptide Label:	isoform X2
- UniProtKB:	F7CUE2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVERGRHHFQARGFKEGAARMKSYSSKTPKLAQRCPLEDKCCPSYLDNDRYNTWKTSPCSNYWN KYTGCLPRLSKDTGMESVRGMPLEYPPKQERLNAYEREVVVNMLNSLSRNRTLPQIVPRCGCVD PLPGRLPYQGYESPCSGRHYCLRGMDYCTTREPSTERRLRPLCSQQPTVRSVSPFGHRPGMQCA VTTPPPSFYPYPNLRWDTSHFKKTGGSQRNNYVVHPEFVSETCPVYPS hide sequence

RefSeq Acc Id:	XP_030109696 ⟸ XM_030253836
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_030109697 ⟸ XM_030253837
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSMUSP00000122537 ⟸ ENSMUST00000125303

Ensembl Acc Id:

ENSMUSP00000092744 ⟸ ENSMUST00000095126

Ensembl Acc Id:

ENSMUSP00000030152 ⟸ ENSMUST00000030152

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q2MH31-F1-model_v2	AlphaFold	Q2MH31	1-260	view protein structure

Promoters

RGD ID:

6836093

Promoter ID:

MM_KWN:37164

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain

Transcripts:

ENSMUST00000038960, NM_001048005, OTTMUST00000015216, OTTMUST00000015217, UC008SIY.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	4	41,464,076 - 41,464,576 (-)	MPROMDB

RGD ID:

6883098

Promoter ID:

EPDNEW_M5000

Type:

initiation region

Name:

1110017D15Rik_1

Description:

Mus musculus RIKEN cDNA 1110017D15 gene , transcript variant8, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M5001 EPDNEW_M5002

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	41,507,754 - 41,507,814	EPDNEW

RGD ID:

6883100

Promoter ID:

EPDNEW_M5001

Type:

single initiation site

Name:

1110017D15Rik_2

Description:

Mus musculus RIKEN cDNA 1110017D15 gene , transcript variant8, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M5000 EPDNEW_M5002

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	41,513,872 - 41,513,932	EPDNEW

RGD ID:

6883102

Promoter ID:

EPDNEW_M5002

Type:

initiation region

Name:

1110017D15Rik_3

Description:

Mus musculus RIKEN cDNA 1110017D15 gene , transcript variant8, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M5000 EPDNEW_M5001

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	41,517,287 - 41,517,347	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1920971	AgrOrtholog
Ensembl Genes	ENSMUSG00000028441	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000030152	ENTREZGENE
	ENSMUST00000030152.13	UniProtKB/Swiss-Prot
	ENSMUST00000095126	ENTREZGENE
	ENSMUST00000095126.5	UniProtKB/TrEMBL
	ENSMUST00000123356	ENTREZGENE
	ENSMUST00000123865	ENTREZGENE
	ENSMUST00000124019	ENTREZGENE
	ENSMUST00000125303	ENTREZGENE
	ENSMUST00000125303.8	UniProtKB/TrEMBL
InterPro	SMRP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:73721	UniProtKB/Swiss-Prot
MGD	MGI:1920971	ENTREZGENE
NCBI Gene	73721	ENTREZGENE
PANTHER	PTHR35664	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SPERMATID-SPECIFIC MANCHETTE-RELATED PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	SMRP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Spmip6	PhenoGen
UniProt	A2ANN9	ENTREZGENE, UniProtKB/TrEMBL
	F7CUE2	ENTREZGENE, UniProtKB/TrEMBL
	Q0GC36	ENTREZGENE
	Q2MH31	ENTREZGENE
	Q9D1B3	ENTREZGENE
	SMRP1_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q0GC36	UniProtKB/Swiss-Prot
	Q9D1B3	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-06-05	Spmip6	sperm microtubule inner protein 6	1110017D15Rik	RIKEN cDNA 1110017D15 gene	Symbol and/or name updated	27372883	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Mammalian Phenotype