Utp23 (UTP23 small subunit processome component) - Rat Genome Database

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Gene: Utp23 (UTP23 small subunit processome component) Heterocephalus glaber
Analyze
Symbol: Utp23
Name: UTP23 small subunit processome component
RGD ID: 18932939
Description: ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); mRNA 5'-UTR binding (ortholog); INVOLVED IN endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH colorectal adenocarcinoma (ortholog); Cornelia de Lange syndrome 4 (ortholog); hereditary multiple exostoses (ortholog); FOUND IN nucleolus (inferred); small-subunit processome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rRNA-binding ribosome biosynthesis protein UTP23; rRNA-processing protein UTP23 homolog; rRNA-processing protein UTP23-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476315,040,390 - 15,044,532 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476315,040,367 - 15,044,532 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Utp23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476315,040,390 - 15,044,532 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476315,040,367 - 15,044,532 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
UTP23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388116,766,524 - 116,774,684 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8116,766,505 - 116,849,463 (+)EnsemblGRCh38hg38GRCh38
GRCh378117,778,763 - 117,786,923 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368117,847,923 - 117,853,380 (+)NCBINCBI36Build 36hg18NCBI36
Celera8113,967,456 - 113,975,628 (+)NCBICelera
Cytogenetic Map8q24.11NCBI
HuRef8113,105,075 - 113,113,245 (+)NCBIHuRef
CHM1_18117,818,903 - 117,827,083 (+)NCBICHM1_1
T2T-CHM13v2.08117,894,649 - 117,917,286 (+)NCBIT2T-CHM13v2.0
Utp23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391551,740,837 - 51,748,018 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1551,740,825 - 51,748,010 (+)EnsemblGRCm39 Ensembl
GRCm381551,877,441 - 51,884,622 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1551,877,429 - 51,884,614 (+)EnsemblGRCm38mm10GRCm38
MGSCv371551,708,987 - 51,716,168 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361551,707,570 - 51,714,047 (+)NCBIMGSCv36mm8
Celera1553,450,118 - 53,457,358 (+)NCBICelera
Cytogenetic Map15CNCBI
cM Map1519.49NCBI
Utp23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8785,074,713 - 85,084,766 (+)NCBIGRCr8
mRatBN7.2783,185,187 - 83,196,652 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl783,189,656 - 83,196,655 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx785,085,326 - 85,090,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0787,286,539 - 87,291,687 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0787,113,439 - 87,118,619 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0791,384,329 - 91,389,605 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl791,384,187 - 91,389,598 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0792,028,550 - 92,033,826 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4788,169,421 - 88,174,702 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1788,190,176 - 88,195,417 (+)NCBI
Celera780,068,080 - 80,073,357 (+)NCBICelera
Cytogenetic Map7q31NCBI
Utp23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541722,859,914 - 22,867,633 (+)NCBIChiLan1.0ChiLan1.0
UTP23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27134,169,273 - 134,177,751 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18109,688,408 - 109,695,784 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08113,441,014 - 113,462,103 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18115,984,355 - 115,990,708 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8115,984,167 - 116,066,606 (+)Ensemblpanpan1.1panPan2
UTP23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11316,213,131 - 16,219,726 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1316,213,159 - 16,339,964 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1316,214,422 - 16,220,697 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01316,501,118 - 16,507,341 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1316,501,146 - 16,628,637 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11316,245,206 - 16,251,428 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01316,345,515 - 16,351,791 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01316,586,304 - 16,592,579 (+)NCBIUU_Cfam_GSD_1.0
Utp23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530322,061,464 - 22,069,089 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647029,486,977 - 29,495,222 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647029,489,354 - 29,495,171 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UTP23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl421,934,434 - 21,940,952 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1421,934,796 - 21,940,994 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2423,209,977 - 23,216,169 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UTP23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18111,404,636 - 111,410,083 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8111,404,634 - 111,413,673 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603928,914,525 - 28,920,872 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005558   ⟹   ENSHGLP00000005487
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476315,040,390 - 15,044,532 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000005559   ⟹   ENSHGLP00000005488
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476315,040,478 - 15,044,024 (+)Ensembl
RefSeq Acc Id: XM_004850199   ⟹   XP_004850256
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476315,040,367 - 15,044,532 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004850256 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00244 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005487
  ENSHGLP00100034987
GenBank Protein JAO01250 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004850256   ⟸   XM_004850199
- UniProtKB: G5AT84 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000005487   ⟸   ENSHGLT00000005558
RefSeq Acc Id: ENSHGLP00000005488   ⟸   ENSHGLT00000005559


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004025 Ensembl, ENTREZGENE
  ENSHGLG00100033575 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000005558 ENTREZGENE
  ENSHGLT00100081192 UniProtKB/TrEMBL
Gene3D-CATH 5'-nuclease UniProtKB/TrEMBL
InterPro Fcf1/Utp23 UniProtKB/TrEMBL
  PIN-like_dom_sf UniProtKB/TrEMBL
KEGG Report hgl:101704209 UniProtKB/TrEMBL
NCBI Gene Utp23 ENTREZGENE
PANTHER RRNA-PROCESSING PROTEIN UTP23 HOMOLOG UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam Fcf1 UniProtKB/TrEMBL
Superfamily-SCOP SSF88723 UniProtKB/TrEMBL
UniProt G5AT84 ENTREZGENE, UniProtKB/TrEMBL