Ripply1 (ripply transcriptional repressor 1) - Rat Genome Database

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Gene: Ripply1 (ripply transcriptional repressor 1) Heterocephalus glaber
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Symbol: Ripply1
Name: ripply transcriptional repressor 1
RGD ID: 18932922
Description: INVOLVED IN bone morphogenesis (ortholog); Notch signaling pathway (ortholog); regulation of gene expression (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Charcot-Marie-Tooth disease type X (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Protein ripply1; ripply1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248039,868,707 - 9,879,909 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ripply1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248039,868,707 - 9,879,909 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RIPPLY1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X106,900,063 - 106,903,341 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX106,900,063 - 106,903,341 (-)EnsemblGRCh38hg38GRCh38
GRCh37X106,143,293 - 106,146,571 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X106,030,104 - 106,033,217 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX106,614,678 - 106,617,946 (-)NCBICelera
Cytogenetic MapXq22.3NCBI
HuRefX95,771,654 - 95,774,579 (-)NCBIHuRef
CHM1_1X106,054,099 - 106,057,367 (-)NCBICHM1_1
T2T-CHM13v2.0X105,336,573 - 105,339,851 (-)NCBIT2T-CHM13v2.0
Ripply1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X138,680,430 - 138,683,102 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX138,680,298 - 138,683,102 (-)EnsemblGRCm39 Ensembl
GRCm38X139,779,681 - 139,782,353 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX139,779,549 - 139,782,353 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X136,314,220 - 136,316,892 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X135,126,012 - 135,128,717 (-)NCBIMGSCv36mm8
CeleraX123,042,286 - 123,044,955 (-)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX61.35NCBI
Ripply1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X108,225,333 - 108,231,537 (-)NCBIGRCr8
mRatBN7.2X103,436,731 - 103,440,904 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX103,436,729 - 103,443,349 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X111,099,420 - 111,114,835 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX111,099,930 - 111,102,464 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0353,488,763 - 53,495,704 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X127,516,006 - 127,518,663 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera344,484,028 - 44,490,937 (+)NCBICelera
Cytogenetic MapXq32NCBI
Ripply1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554909,167,183 - 9,169,773 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554909,167,071 - 9,172,101 (+)NCBIChiLan1.0ChiLan1.0
RIPPLY1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X106,378,121 - 106,386,826 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X106,384,913 - 106,390,427 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X95,998,718 - 96,003,843 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X106,377,932 - 106,381,193 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX106,377,932 - 106,381,193 (-)Ensemblpanpan1.1panPan2
RIPPLY1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X80,457,529 - 80,461,281 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX80,457,912 - 80,460,765 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX66,576,613 - 66,584,440 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X82,100,917 - 82,108,742 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX82,101,300 - 82,104,153 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X79,565,821 - 79,573,644 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X81,275,674 - 81,283,507 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X81,054,482 - 81,062,303 (-)NCBIUU_Cfam_GSD_1.0
Ripply1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X79,809,010 - 79,812,866 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364997,846,041 - 7,848,400 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364997,845,180 - 7,848,954 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIPPLY1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX87,315,358 - 87,319,113 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X87,315,355 - 87,319,580 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X101,723,142 - 101,726,976 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RIPPLY1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X94,730,858 - 94,735,220 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606519,816,939 - 19,824,286 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021241576   ⟹   XP_021097235
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248039,868,707 - 9,879,909 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021097235 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16252 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00100056231
RefSeq Acc Id: XP_021097235   ⟸   XM_021241576
- UniProtKB: G5C3Z1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00100052621 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00100067835 UniProtKB/TrEMBL
InterPro Ripply_fam UniProtKB/TrEMBL
NCBI Gene Ripply1 ENTREZGENE
PANTHER PROTEIN RIPPLY1 UniProtKB/TrEMBL
  PTHR16770 UniProtKB/TrEMBL
Pfam Ripply UniProtKB/TrEMBL
UniProt G5C3Z1 ENTREZGENE, UniProtKB/TrEMBL